mRNA_D-mesarthrocarpus_Contig10192.1.2 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10192.1.2 vs. uniprot
Match: A0A6H5JA09_9PHAE (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA09_9PHAE) HSP 1 Score: 220 bits (560), Expect = 6.870e-62 Identity = 130/214 (60.75%), Postives = 156/214 (72.90%), Query Frame = 1 Query: 1 AFADVAFSEEARAIMA--QGRDDLGL-SDSTNGSGPEAGASRGCGDE---RLVRSSNFLQWTRDDVCGKMKTLKGLLRAFRVCPSQPKVLLFSWSTAMLDILQVYMTAQGYSWLRLDGKTPMGDRQALLDRFNSGDAVNCFIFLISTRAGGLGLNLARASKVILYDVNWNPTNDTQAEDRAYRIGQARHLEVYRLVSTGTIEEIMYMRQLYKLQ 624
AFA+VAF EEARAIMA G+ G+ S S+ G+G AG RG GDE RL R NFLQ RDD CGKM+TLK LL F+ ++ KVLLFS+STAMLDILQ ++QGY++L+LDG T RQ ++DRF +A+ +FL+ST AGG GLNL ASKVILYDVNW D QAEDRAYRIGQ + +EV+RLVSTGTIEE+ YMRQ+YKLQ
Sbjct: 114 AFANVAFDEEARAIMAGLPGQHGGGVASGSSIGAGRGAGG-RGGGDEWDRRLARPENFLQLCRDDTCGKMRTLKVLLERFK---NKQKVLLFSYSTAMLDILQALCSSQGYTFLKLDGNTAKDQRQKMIDRFTKQNAIQSNVFLVSTTAGGTGLNLQAASKVILYDVNW----DAQAEDRAYRIGQLKEVEVFRLVSTGTIEELTYMRQIYKLQ 319
BLAST of mRNA_D-mesarthrocarpus_Contig10192.1.2 vs. uniprot
Match: D7FIQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ3_ECTSI) HSP 1 Score: 223 bits (568), Expect = 6.980e-62 Identity = 128/220 (58.18%), Postives = 152/220 (69.09%), Query Frame = 1 Query: 1 AFADVAFSEEARAIMAQGRDDLGLSDSTNGSGPEAGASRGCG------------DERLVRSSNFLQWTRDDVCGKMKTLKGLLRAFRVCPSQPKVLLFSWSTAMLDILQVYMTAQGYSWLRLDGKTPMGDRQALLDRFNSGDAVNCFIFLISTRAGGLGLNLARASKVILYDVNWNPTNDTQAEDRAYRIGQARHLEVYRLVSTGTIEEIMYMRQLYKLQ 624
AFA+VAFSEEAR IMA DL +G G +G+S G D RL R NFLQ RDD CGKM+TLK LL F+ ++ KVLLFS+STAMLDILQ ++QGY++L+LDG T RQ ++DRF +A+ +FLIST AGG GLNL ASKVILYDVNWNP D QAEDRAYRIGQ + +EV+RLVSTGTIEE+ YMRQ+YKLQ
Sbjct: 678 AFANVAFSEEARVIMA----DL---PGQHGGGAVSGSSIGXXXXXXXXXXXXEWDRRLARPENFLQLCRDDTCGKMRTLKVLLERFK---NKHKVLLFSYSTAMLDILQALCSSQGYTFLKLDGNTAKDQRQKMIDRFTKQNAIQNNVFLISTTAGGTGLNLQAASKVILYDVNWNPAQDAQAEDRAYRIGQLKEVEVFRLVSTGTIEELTYMRQIYKLQ 887
BLAST of mRNA_D-mesarthrocarpus_Contig10192.1.2 vs. uniprot
Match: D7FX84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX84_ECTSI) HSP 1 Score: 187 bits (474), Expect = 2.420e-49 Identity = 105/208 (50.48%), Postives = 134/208 (64.42%), Query Frame = 1 Query: 4 FADVAFSEEARAIMAQGRDDLGLSDSTNGSGPEAGASRGCGDERLVRSSNFLQWTRDDVCGKMKTLKGLLRAFRVCPSQPKVLLFSWSTAMLDILQVYMTAQGYSWLRLDGKTPMGDRQALLDRFNSGDAVNCFIFLISTRAGGLGLNLARASKVILYDVNWNPTNDTQAEDRAYRIGQARHLEVYRLVSTGTIEEIMYMRQLYKLQV 627
FA+VAF++ AR IM L RS FL ++ VCGKMK+L+ LL F ++ KVL+FSWSTAMLD+L+ ++ A+GY + RLDG T +RQA ++ FNS D F+FLISTRAGG GLNL AS+V+LYDVNWNP QA+DRAYRIGQ R + V+RL+S GTIEE+ YMRQ+YKLQ+
Sbjct: 843 FAEVAFTDRAREIMGG----------------------------LERSQKFLDVSKVGVCGKMKSLETLLAKFH--ETRDKVLVFSWSTAMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNS-DRAGVFVFLISTRAGGQGLNLHTASRVVLYDVNWNPALGLQAQDRAYRIGQKRKVAVFRLISKGTIEEMCYMRQIYKLQI 1019
BLAST of mRNA_D-mesarthrocarpus_Contig10192.1.2 vs. uniprot
Match: A0A7S3GJJ3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GJJ3_9EUKA) HSP 1 Score: 167 bits (422), Expect = 1.240e-45 Identity = 95/194 (48.97%), Postives = 128/194 (65.98%), Query Frame = 1 Query: 136 LVRSSNFLQWTRDDVCGKMKTLKGLLRAFRVCPS------------------QPKVLLFSWSTAMLDILQVYMTAQGYSWLRLDGKTPMGDRQALLDRFNSGDAVNCFIFLISTRAGGLGLNLARASKVILYDVNWNPTNDTQAEDRAYRIGQARHLEVYRLVSTGTIEEIMYMRQLYKLQVILSRERGCREVV 663
L++ S+F +CGK++ + LL+ +R + Q KVLLF+ STAMLDIL+ Y + QG+++LRLDG G RQ L+D+FN+ CF+F IST AGG+GLNL A+KVI++D NWNP+ND QA+DRA+R GQ R +EVYRL+STGTIEE+MY RQ+YK +LS + G EVV
Sbjct: 35 LMKESSFR------LCGKLQVVHALLQKWRSTFAVEERGQSGKEETEDRKWLQNKVLLFATSTAMLDILEQYASVQGFTYLRLDGTVEQGKRQQLIDKFNTDPT--CFLFFISTTAGGVGLNLTSANKVIVFDPNWNPSNDLQAQDRAFRYGQRRAVEVYRLLSTGTIEEVMYHRQVYKQ--LLSMD-GVDEVV 217
BLAST of mRNA_D-mesarthrocarpus_Contig10192.1.2 vs. uniprot
Match: UPI001458743C (DNA excision repair protein ERCC-6-like 2 isoform X1 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI001458743C) HSP 1 Score: 172 bits (436), Expect = 2.810e-44 Identity = 89/163 (54.60%), Postives = 115/163 (70.55%), Query Frame = 1 Query: 139 VRSSNFLQWTRDDVCGKMKTLKGLLRAFRVCPSQPKVLLFSWSTAMLDILQVYMTAQGYSWLRLDGKTPMGDRQALLDRFNSGDAVNCFIFLISTRAGGLGLNLARASKVILYDVNWNPTNDTQAEDRAYRIGQARHLEVYRLVSTGTIEEIMYMRQLYKLQV 627
R + F + CGKMK LKGLL F KVLLFS+ST +LDIL+ YM GY + RLDG T + R L+ FN ++ FIFLIST+AGGLGLNL A++V+++D NWNPT+D QA+DRAYRIGQ R+++VYRL+S G+IEE MY+RQ+YK Q+
Sbjct: 648 TREAAFRTLSDPKYCGKMKILKGLLSVFS--RDHSKVLLFSYSTKVLDILEQYMMTTGYEYRRLDGSTSVKKRMELVREFNKDPSI--FIFLISTKAGGLGLNLTGANRVVIFDPNWNPTHDLQAQDRAYRIGQRRNVQVYRLISAGSIEENMYLRQVYKQQL 806
BLAST of mRNA_D-mesarthrocarpus_Contig10192.1.2 vs. uniprot
Match: A0A7S3WK24_EMIHU (Hypothetical protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WK24_EMIHU) HSP 1 Score: 169 bits (427), Expect = 2.830e-44 Identity = 86/160 (53.75%), Postives = 115/160 (71.88%), Query Frame = 1 Query: 139 VRSSNFLQWTRDDVCGKMKTLKGLLRAFRVCPSQPKVLLFSWSTAMLDILQVYMTAQGYSWLRLDGKTPMGDRQALLDRFNSGDAVNCFIFLISTRAGGLGLNLARASKVILYDVNWNPTNDTQAEDRAYRIGQARHLEVYRLVSTGTIEEIMYMRQLYK 618
R + FL D CGKM+ L+GLL +R+ KVLLFS+ST MLDIL+ + GY++ RLDGKT R L+D FN+ +++ F+FL+ST+AGGLGLNL A+ V+++D NWNP++D QA+DRAYRIGQ + VYRLVS+ T+EE MY+RQLYK
Sbjct: 348 TRDNTFLSRGSVDKCGKMRALRGLLSTWRL--RSAKVLLFSYSTVMLDILEDMVARAGYNYRRLDGKTSAKKRTQLVDEFNTQESI--FVFLLSTKAGGLGLNLVAATVVVIFDPNWNPSHDMQAQDRAYRIGQRHDVNVYRLVSSDTLEEKMYLRQLYK 503
BLAST of mRNA_D-mesarthrocarpus_Contig10192.1.2 vs. uniprot
Match: A0A210QI17_MIZYE (DNA repair and recombination protein RAD26-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QI17_MIZYE) HSP 1 Score: 172 bits (435), Expect = 3.810e-44 Identity = 89/163 (54.60%), Postives = 114/163 (69.94%), Query Frame = 1 Query: 139 VRSSNFLQWTRDDVCGKMKTLKGLLRAFRVCPSQPKVLLFSWSTAMLDILQVYMTAQGYSWLRLDGKTPMGDRQALLDRFNSGDAVNCFIFLISTRAGGLGLNLARASKVILYDVNWNPTNDTQAEDRAYRIGQARHLEVYRLVSTGTIEEIMYMRQLYKLQV 627
R + F + CGKMK LKGLL F KVLLFS+ST +LDIL+ YM GY + RLDG T R L+ FN ++ FIFLIST+AGGLGLNL A++V+++D NWNPT+D QA+DRAYRIGQ R+++VYRL+S G+IEE MY+RQ+YK Q+
Sbjct: 624 TREAAFRTLSDPKYCGKMKILKGLLSVFN--KDHSKVLLFSYSTRVLDILEQYMMTTGYEYRRLDGSTSAKKRMDLVREFNKDPSI--FIFLISTKAGGLGLNLTGANRVVIFDPNWNPTHDLQAQDRAYRIGQRRNVQVYRLISAGSIEENMYLRQVYKQQL 782
BLAST of mRNA_D-mesarthrocarpus_Contig10192.1.2 vs. uniprot
Match: A0A6J8DTE3_MYTCO (ERCC6L2 n=2 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8DTE3_MYTCO) HSP 1 Score: 171 bits (434), Expect = 5.260e-44 Identity = 89/162 (54.94%), Postives = 114/162 (70.37%), Query Frame = 1 Query: 142 RSSNFLQWTRDDVCGKMKTLKGLLRAFRVCPSQPKVLLFSWSTAMLDILQVYMTAQGYSWLRLDGKTPMGDRQALLDRFNSGDAVNCFIFLISTRAGGLGLNLARASKVILYDVNWNPTNDTQAEDRAYRIGQARHLEVYRLVSTGTIEEIMYMRQLYKLQV 627
+ ++F + CGKMK LKGLL F KVL+FS+ST +LDI + Y+ Y + RLDG T M R AL+ FN N FIFLISTRAGGLGLNL A++V+++D NWNPT+D QA+DRAYRIGQ R+++VYRL+S GTIEE MY+RQ+YK Q+
Sbjct: 747 KEASFRTLSDPKYCGKMKVLKGLLSVFY--KDHSKVLVFSYSTRVLDIFEQYLMTTEYEYRRLDGSTSMKKRMALVREFNRDP--NIFIFLISTRAGGLGLNLTGANRVVIFDPNWNPTHDLQAQDRAYRIGQRRNVKVYRLISAGTIEENMYLRQIYKQQL 904
BLAST of mRNA_D-mesarthrocarpus_Contig10192.1.2 vs. uniprot
Match: A0A7C9EDJ7_OPUST (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EDJ7_OPUST) HSP 1 Score: 158 bits (399), Expect = 1.190e-43 Identity = 75/149 (50.34%), Postives = 113/149 (75.84%), Query Frame = 1 Query: 181 CGKMKTLKGLLRAFRVCPSQPKVLLFSWSTAMLDILQVYMTAQGYSWLRLDGKTPMGDRQALLDRFNSGDAVNCFIFLISTRAGGLGLNLARASKVILYDVNWNPTNDTQAEDRAYRIGQARHLEVYRLVSTGTIEEIMYMRQLYKLQV 627
CGKM+ L+ L+ ++ KVLLFS+S MLDIL+ ++ +GY + RLDG TP G RQ+L++ FNS + +FL+STRAGGLGLNL A++V+++D NWNP++D QA+DR++R+GQ RH+ V+RL++ G++EE++Y RQ+YK Q+
Sbjct: 9 CGKMRALERLMSSW--ISHGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTGSRQSLVNDFNSSPSKQ--VFLVSTRAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRLGQKRHVVVFRLIAAGSLEELVYTRQVYKQQL 153
BLAST of mRNA_D-mesarthrocarpus_Contig10192.1.2 vs. uniprot
Match: A0A8B6EE27_MYTGA (DNA excision repair protein ERCC-6-like 2 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EE27_MYTGA) HSP 1 Score: 170 bits (431), Expect = 1.220e-43 Identity = 88/162 (54.32%), Postives = 115/162 (70.99%), Query Frame = 1 Query: 142 RSSNFLQWTRDDVCGKMKTLKGLLRAFRVCPSQPKVLLFSWSTAMLDILQVYMTAQGYSWLRLDGKTPMGDRQALLDRFNSGDAVNCFIFLISTRAGGLGLNLARASKVILYDVNWNPTNDTQAEDRAYRIGQARHLEVYRLVSTGTIEEIMYMRQLYKLQV 627
+ ++F + CGKMK LKGLL F KVL+FS+ST +LDI + Y+ Y + RLDG T + R AL+ FN N FIFLISTRAGGLGLNL A++V+++D NWNPT+D QA+DRAYRIGQ R+++VYRL+S+GTIEE MY+RQ+YK Q+
Sbjct: 638 KEASFRTLSDPKYCGKMKVLKGLLSVFY--KDHSKVLVFSYSTRVLDIFEQYLMTTEYEYRRLDGSTSIKKRMALVREFNRDP--NIFIFLISTRAGGLGLNLTGANRVVIFDPNWNPTHDLQAQDRAYRIGQRRNVKVYRLISSGTIEENMYLRQIYKQQL 795 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10192.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10192.1.2 >prot_D-mesarthrocarpus_Contig10192.1.2 ID=prot_D-mesarthrocarpus_Contig10192.1.2|Name=mRNA_D-mesarthrocarpus_Contig10192.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=241bp MAQGRDDLGLSDSTNGSGPEAGASRGCGDERLVRSSNFLQWTRDDVCGKMback to top mRNA from alignment at D-mesarthrocarpus_Contig10192:7..4218- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10192.1.2 ID=mRNA_D-mesarthrocarpus_Contig10192.1.2|Name=mRNA_D-mesarthrocarpus_Contig10192.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=4212bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10192:7..4218- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10192:7..4218- >mRNA_D-mesarthrocarpus_Contig10192.1.2 ID=mRNA_D-mesarthrocarpus_Contig10192.1.2|Name=mRNA_D-mesarthrocarpus_Contig10192.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=723bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10192:7..4218- (Discosporangium mesarthrocarpum MT17_79)back to top |