mRNA_D-mesarthrocarpus_Contig1018.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1018.1.1 vs. uniprot
Match: A0A836CKN4_9STRA (Peptide chain release factor 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKN4_9STRA) HSP 1 Score: 294 bits (752), Expect = 9.780e-97 Identity = 147/181 (81.22%), Postives = 166/181 (91.71%), Query Frame = 1 Query: 1 VLKFQRVPATETQGRVHTSTATVAIMPEVDEVTVQIKAEDVDMHTARAGGSGGQNVNKVETAVDLLHKPTGIRIFCQQERSQLKNKDLAMKMLRARLYELELEKQQSEVSGNRRAQVGSGARSEKIRTYNWKDSRCSDHRLGKNFPLASFLSGGIDNMISTCILLDQQEMLAEMAKKQAMG 543 V + QRVPATE+QGRVHTSTATVA+MPEVDEVTV+I D+DMHTARAGGSGGQNVNKVETAVDL HKPTGIRIFCQQERSQLKNK+LAM +LR+RLYE+ELEKQQ+ VSGNRRAQVGSGARSEKIRTYNWKDSRCSDHR+ +N+PL +FLSG ID+MI+ CI++DQQE L EMA+KQA G Sbjct: 187 VHRVQRVPATESQGRVHTSTATVAVMPEVDEVTVRIDPGDIDMHTARAGGSGGQNVNKVETAVDLFHKPTGIRIFCQQERSQLKNKELAMSILRSRLYEIELEKQQAAVSGNRRAQVGSGARSEKIRTYNWKDSRCSDHRINRNWPLDTFLSGTIDDMIAACIVMDQQEQLQEMARKQAQG 367
BLAST of mRNA_D-mesarthrocarpus_Contig1018.1.1 vs. uniprot
Match: A0A6H5KZD5_9PHAE (RF_PROK_I domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZD5_9PHAE) HSP 1 Score: 284 bits (727), Expect = 6.630e-92 Identity = 141/182 (77.47%), Postives = 166/182 (91.21%), Query Frame = 1 Query: 1 VLKFQRVPATETQGRVHTSTATVAIMPEVDEVTVQIKAEDVDMHTARAGGSGGQNVNKVETAVDLLHKPTGIRIFCQQERSQLKNKDLAMKMLRARLYELELEKQQSEVSGNRRAQVGSGARSEKIRTYNWKDSRCSDHRLGKNFPLASFLSG-GIDNMISTCILLDQQEMLAEMAKKQAMG 543 V + QRVPATETQGRVHTSTATVAIMPEVDEV V I+ ED+++ TAR+GGSGGQNVNKVE+AVDL HKPTGIRIFC QERSQLKN+++AMK+LR+R+Y++ELEKQQ+E SGNR+AQVGSG+RSEKIRTYNWKDSRCSDHR+GKNFPL +FLSG G+D+MI CILLDQQE++AE+A KQ G Sbjct: 259 VHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHKPTGIRIFCTQERSQLKNREVAMKLLRSRVYDIELEKQQAETSGNRKAQVGSGSRSEKIRTYNWKDSRCSDHRIGKNFPLNNFLSGSGLDDMIGACILLDQQELMAELAAKQRQG 440
BLAST of mRNA_D-mesarthrocarpus_Contig1018.1.1 vs. uniprot
Match: A0A140ECJ7_9STRA (Plastid peptide chain release factor 1 n=1 Tax=Trachydiscus minutus TaxID=1032745 RepID=A0A140ECJ7_9STRA) HSP 1 Score: 273 bits (698), Expect = 8.550e-88 Identity = 133/178 (74.72%), Postives = 160/178 (89.89%), Query Frame = 1 Query: 1 VLKFQRVPATETQGRVHTSTATVAIMPEVDEVTVQIKAEDVDMHTARAGGSGGQNVNKVETAVDLLHKPTGIRIFCQQERSQLKNKDLAMKMLRARLYELELEKQQSEVSGNRRAQVGSGARSEKIRTYNWKDSRCSDHRLGKNFPLASFLSGGIDNMISTCILLDQQEMLAEMAKKQ 534 V + QRVPATETQGRVHTSTATVA+MPEVDEVTV+I ++++MHTAR+GGSGGQNVNKVETAVDLLHKPTGIRIFC QERSQLKNK+LAM +LR++LYE+ELEKQQ +++G RR+Q+GSG RSEKIRTYNWKDSRC+DHRLG+NF L FLSG ID MI+ C+L++Q E L +M+K+Q Sbjct: 246 VHRVQRVPATETQGRVHTSTATVAVMPEVDEVTVKIDPKEIEMHTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMTLLRSKLYEMELEKQQEQITGQRRSQIGSGGRSEKIRTYNWKDSRCTDHRLGQNFNLDKFLSGEIDEMINQCLLMEQNEKLEQMSKEQ 423
BLAST of mRNA_D-mesarthrocarpus_Contig1018.1.1 vs. uniprot
Match: A0A6S9M8F3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9M8F3_HETAK) HSP 1 Score: 270 bits (690), Expect = 1.000e-86 Identity = 135/178 (75.84%), Postives = 158/178 (88.76%), Query Frame = 1 Query: 1 VLKFQRVPATETQGRVHTSTATVAIMPEVDEVTVQIKAEDVDMHTARAGGSGGQNVNKVETAVDLLHKPTGIRIFCQQERSQLKNKDLAMKMLRARLYELELEKQQSEVSGNRRAQVGSGARSEKIRTYNWKDSRCSDHRLGKNFPLASFLSGGIDNMISTCILLDQQEMLAEMAKKQ 534 V + QRVPATETQGRVHTSTATVAIMPEVDEVTV+I +D+++ TAR+GG+GGQNVNKVETA DL HKPTGIRIFC QERSQLKNK++AM +LRARLYE+ELEKQ+SEVSG RRAQVG+GARSEKIRTYNWKDSRCSDHR+G+NFPL FL G +D++I I+ DQQ+ L EMA++Q Sbjct: 235 VHRVQRVPATETQGRVHTSTATVAIMPEVDEVTVKIDPKDIELTTARSGGAGGQNVNKVETAADLFHKPTGIRIFCTQERSQLKNKEMAMNLLRARLYEMELEKQRSEVSGARRAQVGTGARSEKIRTYNWKDSRCSDHRIGQNFPLQMFLDGKVDDIIQALIVSDQQDQLKEMAEEQ 412
BLAST of mRNA_D-mesarthrocarpus_Contig1018.1.1 vs. uniprot
Match: A0A140ECK3_9STRA (Plastid peptide chain release factor 1 n=1 Tax=Monodopsis sp. MarTras21 TaxID=1745953 RepID=A0A140ECK3_9STRA) HSP 1 Score: 268 bits (686), Expect = 3.570e-86 Identity = 131/179 (73.18%), Postives = 158/179 (88.27%), Query Frame = 1 Query: 1 VLKFQRVPATETQGRVHTSTATVAIMPEVDEVTVQIKAEDVDMHTARAGGSGGQNVNKVETAVDLLHKPTGIRIFCQQERSQLKNKDLAMKMLRARLYELELEKQQSEVSGNRRAQVGSGARSEKIRTYNWKDSRCSDHRLGKNFPLASFLSGGIDNMISTCILLDQQEMLAEMAKKQA 537 V + QRVPATETQGRVHTSTATVAIMPEVD+V VQI A+D++MHTAR+GGSGGQNVNKVETAVDLLHKPTGIRIFC QERSQLKNK+LAM++LR+RL+E+E EKQ+ ++G RR+Q+GSG RSEKIRTYNWKDSRC+DHRLG+NFPL +FL G ++ + + C+L +QQE LAEM + A Sbjct: 232 VHRVQRVPATETQGRVHTSTATVAIMPEVDDVQVQIDAKDIEMHTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMQLLRSRLFEMEQEKQRESIAGQRRSQIGSGGRSEKIRTYNWKDSRCTDHRLGQNFPLQTFLDGNLEGITNQCLLQEQQEKLAEMQTQMA 410
BLAST of mRNA_D-mesarthrocarpus_Contig1018.1.1 vs. uniprot
Match: A0A140ECJ9_9STRA (Plastid peptide chain release factor 1 n=1 Tax=Vischeria sp. CAUP Q 202 TaxID=1805947 RepID=A0A140ECJ9_9STRA) HSP 1 Score: 262 bits (670), Expect = 6.930e-84 Identity = 128/179 (71.51%), Postives = 159/179 (88.83%), Query Frame = 1 Query: 1 VLKFQRVPATETQGRVHTSTATVAIMPEVDEVTVQIKAEDVDMHTARAGGSGGQNVNKVETAVDLLHKPTGIRIFCQQERSQLKNKDLAMKMLRARLYELELEKQQSEVSGNRRAQVGSGARSEKIRTYNWKDSRCSDHRLGKNFPLASFLSGGIDNMISTCILLDQQEMLAEMAKKQA 537 V + QRVPATETQGRVHTSTATVA+MPEVDEV V+I +D++MHTAR+GGSGGQNVNKVETAVDLLHKPTGIRIFC QERSQLKNK+LAM++LR++LYE+E+EKQ +EV+G RR+Q+GSGARSEKIRTYNWKDSRC+DHRLG+NFPL + L G ++++ + C+L +QQE L + ++A Sbjct: 224 VHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVRIDPKDIEMHTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMQILRSKLYEMEVEKQMNEVTGQRRSQIGSGARSEKIRTYNWKDSRCTDHRLGQNFPLQTVLEGKLEDITNQCLLSEQQEKLEALQLQKA 402
BLAST of mRNA_D-mesarthrocarpus_Contig1018.1.1 vs. uniprot
Match: A0A5J4YU86_PORPP (Peptide chain release factor 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YU86_PORPP) HSP 1 Score: 263 bits (671), Expect = 2.400e-83 Identity = 134/177 (75.71%), Postives = 155/177 (87.57%), Query Frame = 1 Query: 1 VLKFQRVPATETQGRVHTSTATVAIMPEVDEVTVQIKAEDVDMHTARAGGSGGQNVNKVETAVDLLHKPTGIRIFCQQERSQLKNKDLAMKMLRARLYELELEKQQSEVSGNRRAQVGSGARSEKIRTYNWKDSRCSDHRLGKNFPLASFLSGGIDNMISTCILLDQQEMLAEMAKK 531 V + QRVPATE+QGRVHTSTATVAIMPEVDEVTV+I +D++M TAR+GG+GGQNVNKVETAVDL HKPTGIRIFC QERSQL N++LAM MLRARLYE+ELEKQQSEV G R AQVG+GARSEK+RTYN+KDSRC+DHRL KNFPL SFL G I+ +I +CI+ DQQ L EMA++ Sbjct: 281 VHRVQRVPATESQGRVHTSTATVAIMPEVDEVTVKIDPKDIEMTTARSGGAGGQNVNKVETAVDLTHKPTGIRIFCTQERSQLLNRELAMTMLRARLYEIELEKQQSEVRGARLAQVGTGARSEKVRTYNYKDSRCTDHRLNKNFPLQSFLDGAIEELIQSCIIDDQQRKLQEMAEQ 457
BLAST of mRNA_D-mesarthrocarpus_Contig1018.1.1 vs. uniprot
Match: A0A1X6PEJ9_PORUM (RF_PROK_I domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PEJ9_PORUM) HSP 1 Score: 260 bits (664), Expect = 3.110e-82 Identity = 133/179 (74.30%), Postives = 154/179 (86.03%), Query Frame = 1 Query: 1 VLKFQRVPATETQGRVHTSTATVAIMPEVDEVTVQIKAEDVDMHTARAGGSGGQNVNKVETAVDLLHKPTGIRIFCQQERSQLKNKDLAMKMLRARLYELELEKQQSEVSGNRRAQVGSGARSEKIRTYNWKDSRCSDHRLGKNFPLASFLSGGIDNMISTCILLDQQEMLAEMAKKQA 537 V + QRVPATE+QGRVHTST+TVAIMPEVDEV V+I +DVD+ T R+GGSGGQNVNKVETAVDL+HKPTGIR+FC QERSQLKN++LAM++LRA+LYELELE +EVSG RRAQVG+GARSEKIRTYN+KDSR SDHRLG+NF L +FL G ID+MI CI DQQE L EMA + A Sbjct: 283 VHRVQRVPATESQGRVHTSTSTVAIMPEVDEVDVKIDMKDVDISTTRSGGSGGQNVNKVETAVDLMHKPTGIRVFCTQERSQLKNRELAMQILRAKLYELELEAHNAEVSGRRRAQVGTGARSEKIRTYNYKDSRVSDHRLGRNFSLNAFLEGDIDDMIQACIFADQQEQLEEMANEPA 461
BLAST of mRNA_D-mesarthrocarpus_Contig1018.1.1 vs. uniprot
Match: A0A4D9DHG8_9STRA (RF_PROK_I domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DHG8_9STRA) HSP 1 Score: 256 bits (654), Expect = 6.060e-82 Identity = 127/174 (72.99%), Postives = 150/174 (86.21%), Query Frame = 1 Query: 1 VLKFQRVPATETQGRVHTSTATVAIMPEVDEVTVQIKAEDVDMHTARAGGSGGQNVNKVETAVDLLHKPTGIRIFCQQERSQLKNKDLAMKMLRARLYELELEKQQSEVSGNRRAQVGSGARSEKIRTYNWKDSRCSDHRLGKNFPLASFLSGGIDNMISTCILLDQQEMLAEM 522 V + QRVPATETQGRVHTSTATVA+MPEVDEV V+I +D+ + TAR+GGSGGQNVNKVETAVDLLHKPTGIRIFC QERSQLKNK+LAM MLR+RL++LE EKQ+ V+G RR+Q+GSG+RSEKIRTYNWKDSRC+DHRLG NFPL FL G ++ + + C+LL+QQE L M Sbjct: 187 VHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCVLLEQQEKLEAM 360
BLAST of mRNA_D-mesarthrocarpus_Contig1018.1.1 vs. uniprot
Match: L1JFM6_GUITC (RF_PROK_I domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JFM6_GUITC) HSP 1 Score: 254 bits (649), Expect = 2.880e-81 Identity = 125/177 (70.62%), Postives = 155/177 (87.57%), Query Frame = 1 Query: 1 VLKFQRVPATETQGRVHTSTATVAIMPEVDEVTVQIKAEDVDMHTARAGGSGGQNVNKVETAVDLLHKPTGIRIFCQQERSQLKNKDLAMKMLRARLYELELEKQQSEVSGNRRAQVGSGARSEKIRTYNWKDSRCSDHRLGKNFPLASFLSGGIDNMISTCILLDQQEMLAEMAKK 531 V + QRVPATETQGRVHTSTATVAIMPEVDEVTV+I A+D+ + TAR+ G+GGQNVNKVE+AVDL+H PTGIR+FCQQERSQLKNK++AM++LR +LYEL++E+Q SE+S R+ QVG+G+RSEKIRTYNWKD RCSDHRL KNFPL FLSG ++++I CI DQQ+ LA+MA++ Sbjct: 180 VHRVQRVPATETQGRVHTSTATVAIMPEVDEVTVKIDAKDISLTTARSSGAGGQNVNKVESAVDLVHIPTGIRVFCQQERSQLKNKEVAMQILRNKLYELQMEEQMSEISKQRKDQVGTGSRSEKIRTYNWKDGRCSDHRLNKNFPLQQFLSGDLESIIQECIFKDQQQKLADMAQE 356 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1018.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig1018.1.1 >prot_D-mesarthrocarpus_Contig1018.1.1 ID=prot_D-mesarthrocarpus_Contig1018.1.1|Name=mRNA_D-mesarthrocarpus_Contig1018.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=193bp VLKFQRVPATETQGRVHTSTATVAIMPEVDEVTVQIKAEDVDMHTARAGGback to top mRNA from alignment at D-mesarthrocarpus_Contig1018:91..2300+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig1018.1.1 ID=mRNA_D-mesarthrocarpus_Contig1018.1.1|Name=mRNA_D-mesarthrocarpus_Contig1018.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2210bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1018:91..2300+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1018:91..2300+ >mRNA_D-mesarthrocarpus_Contig1018.1.1 ID=mRNA_D-mesarthrocarpus_Contig1018.1.1|Name=mRNA_D-mesarthrocarpus_Contig1018.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=579bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1018:91..2300+ (Discosporangium mesarthrocarpum MT17_79)back to top |