mRNA_D-mesarthrocarpus_Contig10168.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A2N9IJX2_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IJX2_FAGSY) HSP 1 Score: 64.3 bits (155), Expect = 9.580e-9 Identity = 42/107 (39.25%), Postives = 59/107 (55.14%), Query Frame = 1 Query: 19 TFTRPDLAFAVMRISRFTSTINEHKSTTTHFSAAKRLLRYLKGSMVQSLQYHKGRLELKGFADASCNQEWS-------VHLVLHLPSSGNSNFMVVKASASCGTIHY 318 TFTRPDL+FAV ++ +F H T TH AAKR+LRY+KGS+ L + G L L+ +ADA +W+ +HL L +S+ + VK + C I Y Sbjct: 248 TFTRPDLSFAVNQVCQFM-----HSPTDTHLIAAKRILRYIKGSLSSGLLFQPGSLNLQAYADA----DWAGDPTRSPIHLWLRCFLGLHSHHLGVKETMHCLPILY 345
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A2P6U5I4_CHLSO (Gag-Pol poly n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U5I4_CHLSO) HSP 1 Score: 63.5 bits (153), Expect = 9.630e-9 Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 2 Query: 230 RSISCYIFPLAGTAISWSSKLQPVVAQSTTEAEYNPLGDTAKKGMYLDSFITKLEPFKMEIITIHEDKQ 436 RS + Y+F L G+AISWSS+LQP VA STTEAEY K+G++L + ++ L +++ ITI+ D Q Sbjct: 109 RSTTGYVFILGGSAISWSSRLQPTVAASTTEAEYMAAAYAIKEGLWLRTLLSDLG-MRLDTITINADNQ 176
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A1S4E1E5_CUCME (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Cucumis melo TaxID=3656 RepID=A0A1S4E1E5_CUCME) HSP 1 Score: 63.9 bits (154), Expect = 1.200e-8 Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1 Query: 1 SFTYLFTFTRPDLAFAVMRISRFTSTINEHKSTTTHFSAAKRLLRYLKGSMVQSLQYHKGRLELKGFADASCNQEWS 231 S YL TFTRPD+AF+V R+S+F HK T HFSA KR+LRYL+G++ +++ KG L+ F C+ +W+ Sbjct: 220 SLQYL-TFTRPDIAFSVNRVSQFM-----HKPTIIHFSAVKRILRYLRGTLTFGIKFRKGSFSLQTF----CDSDWA 286
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A2K3KSE5_TRIPR (Uncharacterized protein n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KSE5_TRIPR) HSP 1 Score: 61.6 bits (148), Expect = 1.550e-8 Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 2 Query: 182 GWNSKDLQMQAVTRSGRSISCYIFPLAGTAISWSSKLQPVVAQSTTEAEYNPLGDTAKKGMYLDSFITKLEPFKMEIITIHED 430 GW+ D R RS S Y+F + A+SWSSK QP+V STTEAE+ +A +G++L +T+++ + + ITI+ D Sbjct: 64 GWSDSDYASDIDDR--RSTSGYVFMIGTKAVSWSSKKQPIVTLSTTEAEFIAAASSACQGIWLSRILTQIDAREKDCITIYCD 144
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A5D3DUH6_CUCME (Putative mitochondrial protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DUH6_CUCME) HSP 1 Score: 63.9 bits (154), Expect = 1.560e-8 Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1 Query: 1 SFTYLFTFTRPDLAFAVMRISRFTSTINEHKSTTTHFSAAKRLLRYLKGSMVQSLQYHKGRLELKGFADASCNQEWS 231 S YL TFTRPD+AF++ R+S+F HK T HFSA KR+LRYL+G+ +++ KG L+ F C+ EW+ Sbjct: 230 SLQYL-TFTRPDIAFSINRVSQFM-----HKPTVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTF----CDSEWA 296
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A2N9HGA9_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HGA9_FAGSY) HSP 1 Score: 61.6 bits (148), Expect = 1.750e-8 Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1 Query: 19 TFTRPDLAFAVMRISRFTSTINEHKSTTTHFSAAKRLLRYLKGSMVQSLQYHKGRLELKGFADA 210 TFTRPD+ FAV R+ +F HK T+THF AAKR+LR+LKG++ + + + G L L F DA Sbjct: 42 TFTRPDITFAVNRVCQFM-----HKPTSTHFMAAKRILRFLKGTLDKGILFQPGPLTLTAFTDA 100
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A1Y1K7I6_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1K7I6_PHOPY) HSP 1 Score: 59.7 bits (143), Expect = 2.110e-8 Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1 Query: 28 RPDLAFAVMRISRFTSTINEHKSTTTHFSAAKRLLRYLKGSMVQSLQYHKGRLELKGFADASCNQEWSVHLV 243 RPD+ F+V +S+F + T THF AKR+LRYLKG++ QSL Y KG L +KGF DA +W +L+ Sbjct: 10 RPDIPFSVSYLSQFNTCY-----TNTHFQHAKRILRYLKGTIDQSLIYKKGDLGIKGFCDA----DWGNNLI 72
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A151SEE7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SEE7_CAJCA) HSP 1 Score: 61.2 bits (147), Expect = 2.600e-8 Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 2 Query: 230 RSISCYIFPLAGTAISWSSKLQPVVAQSTTEAEYNPLGDTAKKGMYLDSFITKL 391 RS++CYIF L G A+SW + LQP+VA STT+AEY L + KKG+ L I L Sbjct: 40 RSLTCYIFTLYGCAVSWKATLQPIVALSTTKAEYMSLTEGVKKGICLQGLIDSL 93
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A2X0MHJ4_9BASI (BQ5605_C011g06287 protein n=1 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0MHJ4_9BASI) HSP 1 Score: 63.2 bits (152), Expect = 3.870e-8 Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 2 Query: 161 HYSTTR------EGWNSKDLQMQAVTRSGRSISCYIFPLAGTAISWSSKLQPVVAQSTTEAEYNPLGDTAKKGMYLDSFITKL 391 HY+ T EG++ D + T RS Y+F LAG AISWSS+LQP VA S+TEAEY L AK+ ++L S +T+L Sbjct: 2644 HYTRTSAPLLGYEGYSDSDWGLDIQT--SRSTMGYLFKLAGGAISWSSRLQPRVACSSTEAEYLGLSHAAKEAVFLRSLLTEL 2724
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A2P6U5G8_CHLSO (Retrovirus-related Pol poly from transposon TNT 1-94 isoform A n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U5G8_CHLSO) HSP 1 Score: 62.8 bits (151), Expect = 4.840e-8 Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 2 Query: 230 RSISCYIFPLAGTAISWSSKLQPVVAQSTTEAEYNPLGDTAKKGMYLDSFITKLEPFKMEIITIHEDKQ 436 RS + Y+F L G AISWSS+LQP VA STTEAEY K+G++L + ++ L +++ ITI+ D Q Sbjct: 983 RSTTGYVFMLGGGAISWSSRLQPTVAASTTEAEYMAAAYAIKEGLWLRTLLSDLG-MRLDTITINADNQ 1050 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10168.1.1 >prot_D-mesarthrocarpus_Contig10168.1.1 ID=prot_D-mesarthrocarpus_Contig10168.1.1|Name=mRNA_D-mesarthrocarpus_Contig10168.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=130bp MQAVTRSGRSISCYIFPLAGTAISWSSKLQPVVAQSTTEAEYNPLGDTAKback to top mRNA from alignment at D-mesarthrocarpus_Contig10168:3479..4342+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10168.1.1 ID=mRNA_D-mesarthrocarpus_Contig10168.1.1|Name=mRNA_D-mesarthrocarpus_Contig10168.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=864bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10168:3479..4342+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10168:3479..4342+ >mRNA_D-mesarthrocarpus_Contig10168.1.1 ID=mRNA_D-mesarthrocarpus_Contig10168.1.1|Name=mRNA_D-mesarthrocarpus_Contig10168.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=390bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10168:3479..4342+ (Discosporangium mesarthrocarpum MT17_79)back to top |