mRNA_D-mesarthrocarpus_Contig10164.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10164.1.1 vs. uniprot
Match: D7FZH6_ECTSI (WD repeat domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH6_ECTSI) HSP 1 Score: 285 bits (728), Expect = 2.800e-83 Identity = 199/303 (65.68%), Postives = 241/303 (79.54%), Query Frame = 1 Query: 1 KTNSLPLRLSPCSAVAFLRALSVRLRTPLLDDIHCELLKRLTPNLRGRGPKVSWSRSKEAYKELDWKYLDQVTWPVFFVEFARAREAQKRAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRP-----EPGRVELLCLALEAGEHHLLPLELKVEALEYLCEQVLETAWFEKEAEHRLRSPPESFVVD-NDGTVFDCIVCGLHGNLLCCDACPRAYHAKCIGGKHGTDGDNWACFECSLKDPTPDGLRVPRVNTRLGPVWVVASFVFRP 891 +T S P RL+P S+V+FLRALS+RLRTPLLD IHCELL+R+ LRGR +W++S A +ELDWKYLDQVTWP +FVEF + E Q++ E+ XXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E +E LCLA +AGEHHLLPLE+KV+ALEYL ++ +E WFEKE ++R+R+PPE+FVVD +DG VFDC++CG GNLLCCD CPRAYH +C+GGK G D NW+C+EC ++D DG+RVPRV+T +GPVWV+ +VFRP Sbjct: 1454 RTFSRPFRLTPASSVSFLRALSLRLRTPLLDAIHCELLRRVLCLLRGRAG--NWAKSSAAQRELDWKYLDQVTWPAYFVEFVQTMEEQRQREDAXXXXXXXXXXXXXXGMMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMDSLETLCLAFQAGEHHLLPLEMKVQALEYLVDRAMECPWFEKEIDNRVRTPPEAFVVDADDGKVFDCVICGQVGNLLCCDNCPRAYHPRCVGGKQGIDSVNWSCWECLIEDSARDGVRVPRVSTSMGPVWVIGGYVFRP 1754
BLAST of mRNA_D-mesarthrocarpus_Contig10164.1.1 vs. uniprot
Match: A0A6H5LKE0_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKE0_9PHAE) HSP 1 Score: 279 bits (714), Expect = 2.090e-81 Identity = 203/306 (66.34%), Postives = 243/306 (79.41%), Query Frame = 1 Query: 1 KTNSLPLRLSPCSAVAFLRALSVRLRTPLLDDIHCELLKRLTPNLRGRGPKVSWSRSKEAYKELDWKYLDQVTWPVFFVEFARAREAQKRAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRPEPGR--------VELLCLALEAGEHHLLPLELKVEALEYLCEQVLETAWFEKEAEHRLRSPPESFVVD-NDGTVFDCIVCGLHGNLLCCDACPRAYHAKCIGGKHGTDGDNWACFECSLKDPTPDGLRVPRVNTRLGPVWVVASFVFRP 891 +T S P RL+P S+V+FLRALS+RLRTPLLD IHCELL+R+ LRGR +W++S A +ELDWKYLDQVTWP +FVEF R E Q++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +E LCLA +AGEHHLLPLE+KV+ALEYL ++ +E WFEKE ++R+R+PPE+FVVD +DG VFDC++CG GNLLCCD CPRAYH +C+GGK G D NW+C+EC ++D DG+RVPRV+T +GPVWV+ +VFRP Sbjct: 1851 RTFSRPFRLTPASSVSFLRALSLRLRTPLLDAIHCELLRRVLCLLRGRSG--NWAKSSAAQQELDWKYLDQVTWPAYFVEFVRTMEEQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDSLETLCLAFQAGEHHLLPLEMKVQALEYLVDRAMECPWFEKEIDNRVRTPPEAFVVDADDGKVFDCVICGQVGNLLCCDNCPRAYHPRCVGGKQGIDSVNWSCWECLIEDSARDGVRVPRVSTSMGPVWVIGGYVFRP 2154
BLAST of mRNA_D-mesarthrocarpus_Contig10164.1.1 vs. uniprot
Match: A0A835ZFY5_9STRA (PHD-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFY5_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.210e-17 Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 Query: 646 VDNDGTVFDCIVCGLHGNLLCCDACPRAYHAKCIGGKHGTDGDNWACFEC 795 VD DG VF C++C G L+CC+ CPRAYHA+C+GG+HGT+ +WACFEC Sbjct: 2 VDADGVVFACVLCNRGGTLVCCEHCPRAYHARCVGGRHGTEVADWACFEC 51
BLAST of mRNA_D-mesarthrocarpus_Contig10164.1.1 vs. uniprot
Match: J3MNS7_ORYBR (Uncharacterized protein n=2 Tax=Oryza brachyantha TaxID=4533 RepID=J3MNS7_ORYBR) HSP 1 Score: 77.4 bits (189), Expect = 6.460e-12 Identity = 75/308 (24.35%), Postives = 112/308 (36.36%), Query Frame = 1 Query: 1 KTNSLPLRLSPCSAVAFLRALSVRLRTPLLDDIHCELLKRLTPNLRGRGPKVSWSRSKEAYKELDWKYLDQVTWPVFFVEFARAREAQKRAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRPEPGRVELLCLALEAGEHHLLPLELKVEALEYLCEQVLETAWFEKEAEHRLR-----------------------------SP-PESFVVDNDGTVFDCIVCGLHGNLLCCDACPRAYHAKCIGGKHGT--DGDNWACFECSLKDPTPDGLR 828 ++ S L LSP F+ AL PL+D +H LL+ + +L G + S + + L+W+ LD TWP++ E+ AR ++ R ++L L L E+++ P +K+E L LC+ VLE E R+ SP PE DG +C +CG+ GNLLCCD CP A+H+KC+G +GD W C EC ++ DGL+ Sbjct: 127 RSFSRQLFLSPFPLETFVAALRCIYVNPLIDWVHFALLRAMNSHLEGLANEGDPS-AVHCIRNLNWELLDLATWPIYLAEYLLARGSELRYG---------------------------------------------------------------------MKLTDLKLLNTEYYIQPATVKLELLRLLCDDVLEVEAIRSEVISRMSELDGNDELCKSTRVRRKRRVSVVSDLVNSSPTPEDSSDTEDGNSDECYLCGMDGNLLCCDGCPAAFHSKCVGVVEDLLPEGD-WFCPECLIQKK--DGLK 361
BLAST of mRNA_D-mesarthrocarpus_Contig10164.1.1 vs. uniprot
Match: A0A385JHP1_POPTO (DNA binding protein n=8 Tax=Populus TaxID=3689 RepID=A0A385JHP1_POPTO) HSP 1 Score: 75.5 bits (184), Expect = 2.850e-11 Identity = 71/292 (24.32%), Postives = 99/292 (33.90%), Query Frame = 1 Query: 25 LSPCSAVAFLRALSVRLRTPLLDDIHCELLKRLTPNLRGRGPKVSWSRSKEAYKELDWKYLDQVTWPVFFVEFARAREAQKRAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRPEPGRVELLCLALEAGEHHLLPLELKVEALEYLCEQVLETAWFEKEAEHRLRSPPESFVVD-------------------------------NDGTVFDCIVCGLHGNLLCCDACPRAYHAKCIG--GKHGTDGDNWACFECSL 801 LSP F+ A+ + L D IH +L+ L +L + S S S + LDW LD VTWPVF VE+ G +PG +L L L ++H P+ +KVE L+ LC+ ++E E R D ND +C +C + GNL+CCD CP AYHAKC+G + +GD W C EC++ Sbjct: 438 LSPFGLEEFVAAVKGNSPSSLFDCIHVSILQTLRKHLENLSNEGSESASN-CLRSLDWGLLDLVTWPVFMVEYLLIH--------------------------------------------------------------------GSGLKPG-FDLSRLKLFRSDYHKQPVSVKVEILKCLCDDMIEAETIRSELNRRSSGTDPDMDFDRNVNLGGYKKRKTAMDVSGNSCLTEDAADDTNDWNSDECCLCKMDGNLICCDGCPAAYHAKCVGVANNYLPEGD-WYCPECAI 658
BLAST of mRNA_D-mesarthrocarpus_Contig10164.1.1 vs. uniprot
Match: A0A1D2AC16_AUXPR (Uncharacterized protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AC16_AUXPR) HSP 1 Score: 73.6 bits (179), Expect = 1.240e-10 Identity = 65/284 (22.89%), Postives = 104/284 (36.62%), Query Frame = 1 Query: 19 LRLSPCSAVAFLRALSVRLRTPLLDDIHCELLKRLTPNLRGRGPKVSWSRSKEAYKELDWKYLDQVTWPVFFVEFARAREAQKRAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRPEPGRVELLCLALEAG----------EHHLLPLELKVEALEYLCEQVLETAWFEKEAEHRLRS--------------PPESFVVDNDGTVFDCIVCGLHGNLLCCDACPRAYHAKCIGGKHGTDGDN-WACFEC 795 LRL+P A+ AL+ + L+D++H +L+ L + + ++ A + LD ++LD +TWP++ ++ R + E G + GR L A+ G E+++LPL +KV+ LE L +L+ E + R + PP D C++CGL GNL+CCD CP YH +C+G + GD W C EC Sbjct: 174 LRLAPFPLAAYCAALAAEAASHLVDEVHVSMLRALM---------IDETAAERAQRALDPQFLDALTWPLYLWDWLRLSGSPLARGEWAHRLERTGRGGQATAE-------------------------------------------GTETKGGRGALGARAVFHGRGPARPRHCPEYYVLPLRVKVKILESLANSLLDCITIRAEIDRREAAGQLVAGCEAGPAVAPPPQVAGALDHNTDTCVLCGLGGNLICCDGCPATYHMRCLGETSKSLGDGEWLCPEC 405
BLAST of mRNA_D-mesarthrocarpus_Contig10164.1.1 vs. uniprot
Match: A0A5N5JM57_9ROSI (Uncharacterized protein n=4 Tax=Salix TaxID=40685 RepID=A0A5N5JM57_9ROSI) HSP 1 Score: 73.2 bits (178), Expect = 1.670e-10 Identity = 70/292 (23.97%), Postives = 99/292 (33.90%), Query Frame = 1 Query: 25 LSPCSAVAFLRALSVRLRTPLLDDIHCELLKRLTPNLRGRGPKVSWSRSKEAYKELDWKYLDQVTWPVFFVEFARAREAQKRAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRPEPGRVELLCLALEAGEHHLLPLELKVEALEYLCEQVLETAWFEKEAEHRLRSPPESFVVD-------------------------------NDGTVFDCIVCGLHGNLLCCDACPRAYHAKCIGGKHGT--DGDNWACFECSL 801 LSP F+ L + L D IH +L+ L +L + S S S + LDW LD +TWPVF VE+ G +PG +L L L ++H P+ +KVE L+ LC+ ++E E R D ND +C +C + GNL+CCD CP AYHAKC+G + + +GD W C EC++ Sbjct: 526 LSPFGLEEFVATLKGISPSSLFDCIHVSILRTLRKHLENLLKEGSESASN-CLRSLDWGLLDLITWPVFMVEYLLIH--------------------------------------------------------------------GSGLKPG-FDLSRLKLFRSDYHKQPVSVKVEILKCLCDDMIEAEMIRSELNRRSSGTEPDMDFDRNVNLGGYKKRKTAMDVSGNSCLTEDVADDTNDWNSDECCLCKMDGNLICCDGCPAAYHAKCVGITNNSLPEGD-WYCPECAI 746
BLAST of mRNA_D-mesarthrocarpus_Contig10164.1.1 vs. uniprot
Match: A0A453AT02_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453AT02_AEGTS) HSP 1 Score: 72.0 bits (175), Expect = 3.600e-10 Identity = 68/300 (22.67%), Postives = 107/300 (35.67%), Query Frame = 1 Query: 1 KTNSLPLRLSPCSAVAFLRALSVRLRTPLLDDIHCELLKRLTPNLRGRGPKVSWSRSKEAYKELDWKYLDQVTWPVFFVEFARAREAQKRAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRPEPGRVELLCLALEAGEHHLLPLELKVEALEYLCEQVLETAWFEKEAEHRLRS------------------------------PPESFVVDNDGTVFDCIVCGLHGNLLCCDACPRAYHAKCIGGKHGT--DGDNWACFECSLK 804 ++ S L LSP + F+ AL + PL+D +H LL+ L +L + + + L+W+ LD TWP++ E+ R ++ R ++L L L E++ P +K+E L LC+ V+E E R+ PPE +DG +C +CG+ GNLLCCD CP A+H+KC+G +G+ W C ECS++ Sbjct: 77 RSFSKQLFLSPFALETFVAALRCKHVNPLIDWVHFALLRSLKNHLEDLAHEGD-PPAIHCIRNLNWELLDLATWPIYLAEYLLTRGSELRYG---------------------------------------------------------------------MKLTDLKLLDTEYYWQPATVKLELLRSLCDDVIEIEAIRSELGSRMSELDGNDEGCRATGSRRKKRGSSVVALADSSQPPEGSDDMDDGNSDECYLCGMDGNLLCCDGCPSAFHSKCVGVVEDLLPEGE-WHCPECSMQ 305
BLAST of mRNA_D-mesarthrocarpus_Contig10164.1.1 vs. uniprot
Match: A0A453AT65_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453AT65_AEGTS) HSP 1 Score: 72.0 bits (175), Expect = 3.870e-10 Identity = 68/300 (22.67%), Postives = 107/300 (35.67%), Query Frame = 1 Query: 1 KTNSLPLRLSPCSAVAFLRALSVRLRTPLLDDIHCELLKRLTPNLRGRGPKVSWSRSKEAYKELDWKYLDQVTWPVFFVEFARAREAQKRAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRPEPGRVELLCLALEAGEHHLLPLELKVEALEYLCEQVLETAWFEKEAEHRLRS------------------------------PPESFVVDNDGTVFDCIVCGLHGNLLCCDACPRAYHAKCIGGKHGT--DGDNWACFECSLK 804 ++ S L LSP + F+ AL + PL+D +H LL+ L +L + + + L+W+ LD TWP++ E+ R ++ R ++L L L E++ P +K+E L LC+ V+E E R+ PPE +DG +C +CG+ GNLLCCD CP A+H+KC+G +G+ W C ECS++ Sbjct: 249 RSFSKQLFLSPFALETFVAALRCKHVNPLIDWVHFALLRSLKNHLEDLAHEGD-PPAIHCIRNLNWELLDLATWPIYLAEYLLTRGSELRYG---------------------------------------------------------------------MKLTDLKLLDTEYYWQPATVKLELLRSLCDDVIEIEAIRSELGSRMSELDGNDEGCRATGSRRKKRGSSVVALADSSQPPEGSDDMDDGNSDECYLCGMDGNLLCCDGCPSAFHSKCVGVVEDLLPEGE-WHCPECSMQ 477
BLAST of mRNA_D-mesarthrocarpus_Contig10164.1.1 vs. uniprot
Match: T1MUT9_TRIUA (Uncharacterized protein n=1 Tax=Triticum urartu TaxID=4572 RepID=T1MUT9_TRIUA) HSP 1 Score: 72.0 bits (175), Expect = 3.990e-10 Identity = 68/300 (22.67%), Postives = 107/300 (35.67%), Query Frame = 1 Query: 1 KTNSLPLRLSPCSAVAFLRALSVRLRTPLLDDIHCELLKRLTPNLRGRGPKVSWSRSKEAYKELDWKYLDQVTWPVFFVEFARAREAQKRAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRPEPGRVELLCLALEAGEHHLLPLELKVEALEYLCEQVLETAWFEKEAEHRLRS------------------------------PPESFVVDNDGTVFDCIVCGLHGNLLCCDACPRAYHAKCIGGKHGT--DGDNWACFECSLK 804 ++ S L LSP + F+ AL + PL+D +H LL+ L +L + + + L+W+ LD TWP++ E+ R ++ R ++L L L E++ P +K+E L LC+ V+E E R+ PPE +DG +C +CG+ GNLLCCD CP A+H+KC+G +G+ W C ECS++ Sbjct: 184 RSFSKQLFLSPFALETFVAALRCKHVNPLIDWVHFALLRSLKNHLEDLAHEGD-PPAIHCIRNLNWELLDLATWPIYLAEYLLTRGSELRYG---------------------------------------------------------------------MKLTDLKLLDTEYYWQPATVKLELLRSLCDDVIEIEAIRSELGSRMSELDGNDEGCRATGSRRKKRGSSVVALADSSQPPEGSDDMDDGNSDECYLCGMDGNLLCCDGCPSAFHSKCVGVVEDLLPEGE-WHCPECSMQ 412 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10164.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10164.1.1 >prot_D-mesarthrocarpus_Contig10164.1.1 ID=prot_D-mesarthrocarpus_Contig10164.1.1|Name=mRNA_D-mesarthrocarpus_Contig10164.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=324bp KTNSLPLRLSPCSAVAFLRALSVRLRTPLLDDIHCELLKRLTPNLRGRGPback to top mRNA from alignment at D-mesarthrocarpus_Contig10164:199..4130+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10164.1.1 ID=mRNA_D-mesarthrocarpus_Contig10164.1.1|Name=mRNA_D-mesarthrocarpus_Contig10164.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3932bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10164:199..4130+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10164:199..4130+ >mRNA_D-mesarthrocarpus_Contig10164.1.1 ID=mRNA_D-mesarthrocarpus_Contig10164.1.1|Name=mRNA_D-mesarthrocarpus_Contig10164.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=972bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10164:199..4130+ (Discosporangium mesarthrocarpum MT17_79)back to top |