Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10160.1.1 vs. uniprot
Match:
D7G2U2_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U2_ECTSI)
HSP 1 Score: 135 bits (339), Expect = 8.210e-33
Identity = 89/231 (38.53%), Postives = 121/231 (52.38%), Query Frame = 1
Query: 1 RAGSVHGVTRYHTAHGWISEHVRGSGRQPLVEVVAVGLRGEGENWPEGLTQDC-------------DKALQTPSRRRHVLGMRHAGSKALARTHVCMKQLMTSFSRVLLGQYPRPSHREEGVHPLSVHAYAISSFIGEALLSALCDGV----GESGRVGGGRLPP----EAHCMHLGGVLELALCALFDERKGVLNTLLLSQMKNKGTPLRLLLDACVFVLKAALDMAGGP 630
RA + GV RY T HGWISEH RG+GRQP+VE+++VGL G+G E T+ ++ +Q RRR V G+R G +LAR H KQL+T+F+RVL G PRP HRE+ ++ A A+ F+ E+L G+ G G + PP E H LE CA LL +M+ +G PLR LL+AC ++ +AL+MA GP
Sbjct: 234 RAANSAGVMRYRTRHGWISEHARGTGRQPIVEILSVGLTGQGGEPSEEETEXXXXXXXXXXXXXXLEQHIQQGGRRRPVHGLRATGCNSLARLHTVTKQLVTAFARVLAGSLPRPHHREDLTPNMNPVAPAVCEFLSESLREGFALGLDRTEGSRAVYGPWQAPPSFTSEEH-------LEGNACAN-----------LLVRMERRGPPLRRLLEACSYIFSSALEMAAGP 446
BLAST of mRNA_D-mesarthrocarpus_Contig10160.1.1 vs. uniprot
Match:
A0A7R9U5Z9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5Z9_9STRA)
HSP 1 Score: 55.1 bits (131), Expect = 3.100e-5
Identity = 65/241 (26.97%), Postives = 107/241 (44.40%), Query Frame = 1
Query: 22 VTRYHTAHGWISEHVRGSGRQPLVEVVAVGLRGEGENWPEGLTQDCDKALQTPSRRRHVLG------------MRHAGSKALA--------RTHVCMKQLMTSFSRVLLGQYPRPSHREEGVHPLSVHAYAISSFIGEALLSALCDGVGESGRVGGGRLPPEAHCMHLGGVLELALCALFDERKGVLNTLLLSQMKNKGTPLRLL------LDACVF---------VLKAALDMAGGPKRL 639
V RY GWIS S +P+VEVVAV + + E D + ++ + RH LG MR ++++A + H+ +K L+ + +R+ + R + H +++H++A+S F+ AL A ES P A + G VL+LA L D+++ ++N+++L +M +G RLL LDA + +A L A GP RL
Sbjct: 487 VLRYRVGSGWISATRPFSHPEPIVEVVAVDGALQSADAAEHSVADLIREVKE-LKLRHALGVGKATKKTDFVRMRSFKTRSVAEVGILCCQKLHLAVKNLVATLARMFILP-SRGGYHHTSRHDITLHSWAMSDFLANALNQA-----SESANRAASASLPWA-LVQRGLVLDLATVILHDDKRRMVNSVVLYRMHQQGMLARLLRTVFATLDAFLERDEASLADRARQAVLRQAEGPLRL 719
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10160.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 8.21e-33 / Id = 38.53 Expect = 3.10e-5 / Id = 26.97 Sequence D7G2U2_ECTSI A0A7R9U5Z9_9STRA
Match Name E-value Identity Description
D7G2U2_ECTSI 8.210e-33 38.53 UBA domain-containing protein n=1 Tax=Ectocarpus s... [more] A0A7R9U5Z9_9STRA 3.100e-5 26.97 Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 0 Seed ortholog 2880.D7G2U2 PFAMs UBA Model size 658 Max annot lvl 2759|Eukaryota Hectar predicted targeting category other localisation Exons 5 Evalue 1.35e-33 EggNOG OGs 2D4WP@1|root,2SWJ7@2759|Eukaryota Ec32 ortholog description UBA-like Ec32 ortholog Ec-16_001500.1 Description Ubiquitin associated domain Cds size 657 COG category S
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789159.8159025-CDS-D-mesarthrocarpus_Contig10160:326..443 1680789159.8159025-CDS-D-mesarthrocarpus_Contig10160:326..443 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10160 327..443 + 1680789159.8269763-CDS-D-mesarthrocarpus_Contig10160:984..1125 1680789159.8269763-CDS-D-mesarthrocarpus_Contig10160:984..1125 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10160 985..1125 + 1680789159.8378782-CDS-D-mesarthrocarpus_Contig10160:2135..2304 1680789159.8378782-CDS-D-mesarthrocarpus_Contig10160:2135..2304 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10160 2136..2304 + 1680789159.8495321-CDS-D-mesarthrocarpus_Contig10160:2603..2707 1680789159.8495321-CDS-D-mesarthrocarpus_Contig10160:2603..2707 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10160 2604..2707 + 1680789159.8581681-CDS-D-mesarthrocarpus_Contig10160:3060..3186 1680789159.8581681-CDS-D-mesarthrocarpus_Contig10160:3060..3186 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10160 3061..3186 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10160.1.1
>prot_D-mesarthrocarpus_Contig10160.1.1 ID=prot_D-mesarthrocarpus_Contig10160.1.1|Name=mRNA_D-mesarthrocarpus_Contig10160.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=219bp
RAGSVHGVTRYHTAHGWISEHVRGSGRQPLVEVVAVGLRGEGENWPEGLT back to top mRNA from alignment at D-mesarthrocarpus_Contig10160:327..3187+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10160.1.1 ID=mRNA_D-mesarthrocarpus_Contig10160.1.1|Name=mRNA_D-mesarthrocarpus_Contig10160.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2861bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10160:327..3187+ (Discosporangium mesarthrocarpum MT17_79)AGGGCGGGCAGTGTGCATGGAGTGACACGGTACCATACGGCCCATGGCTG
GATATCAGAACATGTTCGTGGGAGTGGCCGGCAGCCCCTGGTGGAGGTGG
TGGCTGTGGGTTTGCGG GTGAGAGAACCAACCCCCCCTTGGAAGGGCAGG
TGTTTCGTTTGGTTTTTGTTTTGTGTGTATTGTTTTAAAAGTATGTTGTT
CATGTCGTTGGTTTTTTGTTATTGAGATGGCTGTGTATGTCAGAGTGCAA
TAAATGGCATGTTTATCTAAGCGTAGTACACACAGTGTGCTGCCACATTC
TTTGTCTGCTTGCCTGATTCAATCCTTCTGCTGTGCTCGTCACGGGGTGG
TGTGTCATTCCTTTGATTTTGTGGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGGTGGTGTTGTTGGTGTTGTTGG
TGTTGGTGCTGCTGTTTCATAAGGATGCTGTATTCCTCTCTCTTTCTCTC
TCTCTCTCTCGCCCCCCTAACCCTAACCCTATTCCTAACCCTAGTTCCGG
CTTCATTTTTTTTTTGGTTTTGTAACCGATTCCTCACCCACTTGTTTTTT
TTCTTTTTTTTTGTGTGGATTGATGGAACGACTGAATAAATGAATGAAAT
GGTCATAGGGGGAGGGCGAGAACTGGCCCGAGGGATTGACTCAGGACTGT
GACAAGGCCCTCCAGACACCCAGTCGCCGCCGACATGTATTGGGCATGCG
CCACGCAGGGTCCAAGGCGCTTGCCCGGACTCATGTGTGCATGAAGCAG G
TGAGCAAAAAAAGAAGGGAAAAGGAGGAGGAGGAAGAGGAGGAGGGGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGGAGAA
GAAGGAGAAGAAGCCTCTCTAGGGCCTGCTTGAATTAGGGTCCCTTTTTT
TGTGTGCGCGATGTCCAATAGAAAACGAACGTTAGCCAAGTGGACCGACC
AGCCAGCTCCTCTCTCTCTCCGTTTTTTTTTGAGGCCTCTTCACGTAACT
GTTAGTAACTGTTCTGAGTGACTCTTCCCCCCCCCGGCGCTCACGGTAGT
TTTTTGTTTTCTTTTTTTTTTCTCAAGGCCACCGCAGACACGAGAGTCGA
GGGTTACGGTCTCCAGCTCTCCGTTTTAAGGGGGGGTTCAAGAGTGCGAT
TGGTTTGCTTGCTTAGATTTGCAGCGATGGGGGTTTCAATGTTACTTGTT
TTTCAGTGTTTCGAACTCAGGTGTGCAAGGTGCGGTGACTGGATTTTTTC
TGAATCTTGTGTGTTGAGTCAGGGAGAGTGTTGTGGGGAACCGCTCCAAG
GTATGTGCAACATTTTTATTTTTGTTTTTTACCAGTACTGTTGGTAACAG
GGAATCTTGAAATGGCCTTGTGTACTGCGAGGACATTGCAGCTTCTCCTC
CCTCCCCCCCTCCCCTCCCTTCCCCTTACCTCGCCTCACATTTTTGATGT
TGTCTTGTGTTTTTCTGTTCTGTTCTGTTCTATTCTTTTCTGTTCTGTTT
TGTTTTGGTATGTCCTGCCACAGTTTGGTTTGGTTTTGGTTTGGTTTTGA
TTTGGTTTCTGGTTTTGTTTGGGCCTCTCAAATTGTGCGGCTTTATCCCT
CTTTGCTCTTATTTGTCTTGTTTGTTCCGCTGCTGCTGTCGGCTTTGTCA
CTCCCAGCTATCCCCAACCCTGAACCCTAGCCCATTGACCTTAAACCCTA
ACCTATCAACCCTAAATCCGAACCGCTAACCCTACCCTAACCCCCATTGC
TTGTGGCAGCTCATGACGTCCTTCTCCAGGGTCCTGCTGGGGCAGTACCC
ACGTCCCTCACACAGGGAAGAAGGTGTTCACCCCCTCAGCGTGCACGCCT
ATGCCATATCCTCCTTCATCGGCGAGGCATTGCTGTCCGCCCTCTGTGAT
GGTGTTGGGGAGAGCGGCCGCGTCGGGG GTGAGAGAGCAGGAGAGGGTTA
GGGTTAGGGTTAGGGTTAGGGTCAGGGTTAGGGTCAGGGTTACAGGGAGA
GTGGCTGTGTGGGTAGTGAAAGAGAGAGAAAGGGTGTGTGTGAAACTTGG
GGTCGGTGTTAGGTTAGTGCTAGGGTTCCGTCTAAGGGGGGAGCAGGTGT
GTGTGTGTGGGGTGATCTACCCCGATTGAAGTACTATCGGTTGTCGAAAT
CACCTTGTTGCTGTTAGACTTCCCCCCCCTGATGCTTCACCCTCAGTGAC
TGACCTCTGTGTTCTGCTCTCTCTCAGGCGGCCGTCTTCCTCCGGAGGCC
CATTGCATGCATCTGGGGGGGGTGCTGGAGCTGGCGCTGTGCGCCCTGTT
TGATGAGAGGAAGGGTGTCCTCAACACACTT GTATGTCCCCCCCCCCAGA
GTTTTTTTTCCCATGCATTGGACGTTGTTGTACGGGAGGGACACCAAGAT
CCATTATATTCAGGCCAGGCCCCTTATGCCCCTCCCCTGCCCCCCCCCTC
CCCAGACTTTCTACTCTCCCACTTTGAATGTACCCTATCAATATGTCCTA
ACCTCAATGCCAAGCCTAACCCTAAACCTAAGTACTTCTCGCGTTACAAT
TGCCTGTAGTGTCGGACTAAACATGGAGCTGTGTTGAAACCCACCCTCCA
CCACCATCATTTTTTGTCTTTCCTGATCCTTATTTTGACTCTTCCACGCC
CACACTCCCACACTCCCACCCTCTGTCCCCCCAGCTGCTGTCGCAGATGA
AAAACAAGGGCACCCCTCTGAGGCTTCTACTTGATGCCTGTGTGTTTGTA
CTCAAGGCGGCTCTGGACATGGCGGGGGGGCCCAAGCGACTGGGCCCCGA
GCACGGGGCA back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10160:327..3187+
>mRNA_D-mesarthrocarpus_Contig10160.1.1 ID=mRNA_D-mesarthrocarpus_Contig10160.1.1|Name=mRNA_D-mesarthrocarpus_Contig10160.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=657bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10160:327..3187+ (Discosporangium mesarthrocarpum MT17_79) back to top