mRNA_D-mesarthrocarpus_Contig10149.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_D-mesarthrocarpus_Contig10149.1.1
Unique Name	mRNA_D-mesarthrocarpus_Contig10149.1.1
Type	mRNA
Organism	Discosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)

Homology

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BLAST of mRNA_D-mesarthrocarpus_Contig10149.1.1 vs. uniprot
Match: D8LPU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPU7_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.140e-16
Identity = 47/103 (45.63%), Postives = 61/103 (59.22%), Query Frame = 3

Query:  102 FTTHGTRQVCGESQSA-GTIILCDGDRCDAEYHLSCLSPPIRAIPPGKWYCLPCLSKRGEQVQVRLSHENQKKADNAKKRALAGKPPLPCKAGGRRSAAQSSP 407
            F   G  ++CG++  A G I+LCD   CDAEYHLSC +PP++  P G+W+CL C   RGE V    + E  KK    K+  L  KPPLP KAG ++  A  SP
Sbjct:  160 FLEDGACEMCGDNNEAKGDILLCDS--CDAEYHLSCCTPPLQVCPEGEWFCLTCRKNRGEPVTKLFNEERAKKEATMKQHELLNKPPLPNKAGKKKRDACESP 260

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BLAST of mRNA_D-mesarthrocarpus_Contig10149.1.1 vs. uniprot
Match: A0A6H5KC98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC98_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.150e-16
Identity = 47/103 (45.63%), Postives = 61/103 (59.22%), Query Frame = 3

Query:  102 FTTHGTRQVCGESQSA-GTIILCDGDRCDAEYHLSCLSPPIRAIPPGKWYCLPCLSKRGEQVQVRLSHENQKKADNAKKRALAGKPPLPCKAGGRRSAAQSSP 407
            F   G  ++CG++  A G I+LCD   CDAEYHLSC +PP++  P G+W+CL C   RGE V    + E  KK    K+  L  KPPLP KAG ++  A  SP
Sbjct:  160 FLEDGACEMCGDNNEAKGDILLCDS--CDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPVTKLFNEERAKKEVTMKQHELLNKPPLPNKAGKKKRDACESP 260

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BLAST of mRNA_D-mesarthrocarpus_Contig10149.1.1 vs. uniprot
Match: D6WAY6_TRICA (RING-type E3 ubiquitin transferase n=2 Tax=Tribolium castaneum TaxID=7070 RepID=D6WAY6_TRICA)

HSP 1 Score: 65.5 bits (158), Expect = 2.500e-8
Identity = 26/63 (41.27%), Postives = 42/63 (66.67%), Query Frame = 3

Query:  126 VCGESQSAGTIILCDGDRCDAEYHLSCLSPPIRAIPPGKWYCLPC------LSKRGEQVQVRL 296
            +C + ++AGT+I+CD   CD+ +HL+CL PP+ A+PP +WYC  C      + K GE+++  L
Sbjct:  284 ICSKKENAGTLIMCD--ECDSAFHLTCLKPPLPAVPPDEWYCPECKNDDSEIVKAGEKLKTSL 344

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BLAST of mRNA_D-mesarthrocarpus_Contig10149.1.1 vs. uniprot
Match: A0A024TPT3_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TPT3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.890e-8
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 3

Query:  129 CGESQSAGTIILCDGDRCDAEYHLSCLSPPIRAIPPGKWYCLPCLSKRGEQVQVRLSHENQKKADN 326
            CG   +AG+I+LCDG  CDAEYH  CL PP+  +P G ++C  C     ++ ++R + E +   DN
Sbjct:   33 CGLDNNAGSILLCDGHECDAEYHTYCLVPPLAEVPVGDFFCPACSGT--DKYEIRTAKEGKDDTDN 96

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BLAST of mRNA_D-mesarthrocarpus_Contig10149.1.1 vs. uniprot
Match: A0A485L006_9STRA (Aste57867_14187 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L006_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.000e-8
Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 3

Query:  129 CGESQSAGTIILCDGDRCDAEYHLSCLSPPIRAIPPGKWYCLPCLSKRGEQVQ 287
            CG   +A +I+LCDG+ C+AEYH+ CL PP+  +P G +YC  C  K G +++
Sbjct:   35 CGLDNNASSILLCDGNGCNAEYHIYCLVPPLSEVPDGDFYCPSCSGKEGYEIR 87

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BLAST of mRNA_D-mesarthrocarpus_Contig10149.1.1 vs. uniprot
Match: A0A6A6KAL3_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6KAL3_HEVBR)

HSP 1 Score: 63.9 bits (154), Expect = 9.650e-8
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 3

Query:  102 FTTHGTRQVCGESQSAGTIILCDGDRCDAEYHLSCLSPPIRAIPPGKWYCLPCLSKR 272
            F   G +  C   +  GTI+ C+G  C   YHLSCL+PP++A+P   WYCL C+ K+
Sbjct:  447 FQPDGNQNACLICKLGGTILCCEGRGCKRSYHLSCLNPPLKAVPLEVWYCLACVRKK 503

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BLAST of mRNA_D-mesarthrocarpus_Contig10149.1.1 vs. uniprot
Match: A0A251L9Y5_MANES (Uncharacterized protein (Fragment) n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A251L9Y5_MANES)

HSP 1 Score: 63.9 bits (154), Expect = 9.820e-8
Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 3

Query:  102 FTTHGTRQVCGESQSAGTIILCDGDRCDAEYHLSCLSPPIRAIPPGKWYCLPCLSKR 272
            F   G    C   +  GT++ CDG  C   YH+SCL PP++A+P G WYCL C  K+
Sbjct:  435 FQPDGNLNTCLICKLGGTLLCCDGKGCKRSYHVSCLDPPLKAVPVGVWYCLACGRKK 491

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BLAST of mRNA_D-mesarthrocarpus_Contig10149.1.1 vs. uniprot
Match: A0A200R5T0_9MAGN (SNF2-related n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200R5T0_9MAGN)

HSP 1 Score: 63.9 bits (154), Expect = 1.010e-7
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 3

Query:  126 VCGESQSAGTIILCDGDRCDAEYHLSCLSPPIRAIPPGKWYCLPCLSKRGE 278
            VC   +  GT++ C+G+ C   YHL CL PP++ +PPG W+CL C+ K+ E
Sbjct:  457 VCVICKIGGTLLCCEGEGCKKSYHLDCLDPPLKDVPPGVWHCLCCVKKKME 507

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BLAST of mRNA_D-mesarthrocarpus_Contig10149.1.1 vs. uniprot
Match: UPI000B786954 (helicase protein MOM1-like isoform X1 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B786954)

HSP 1 Score: 63.9 bits (154), Expect = 1.010e-7
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 3

Query:  102 FTTHGTRQVCGESQSAGTIILCDGDRCDAEYHLSCLSPPIRAIPPGKWYCLPCLSKR 272
            F   G +  C   +  GTI+ C+G  C   YHLSCL+PP++A+P   WYCL C+ K+
Sbjct:  447 FQPDGNQNACLICKLGGTILCCEGRGCKRSYHLSCLNPPLKAVPLEVWYCLACVRKK 503

[Close]

BLAST of mRNA_D-mesarthrocarpus_Contig10149.1.1 vs. uniprot
Match: UPI001CC680DB (helicase protein MOM1 isoform X1 n=4 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC680DB)

HSP 1 Score: 63.9 bits (154), Expect = 1.010e-7
Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 3

Query:  102 FTTHGTRQVCGESQSAGTIILCDGDRCDAEYHLSCLSPPIRAIPPGKWYCLPCLSKR 272
            F   G    C   +  GT++ CDG  C   YH+SCL PP++A+P G WYCL C  K+
Sbjct:  435 FQPDGNLNTCLICKLGGTLLCCDGKGCKRSYHVSCLDPPLKAVPVGVWYCLACGRKK 491

The following BLAST results are available for this feature:

BLAST of mRNA_D-mesarthrocarpus_Contig10149.1.1 vs. uniprot

BLAST of mRNA_D-mesarthrocarpus_Contig10149.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
D8LPU7_ECTSI	1.140e-16	45.63	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KC98_9PHAE	1.150e-16	45.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D6WAY6_TRICA	2.500e-8	41.27	RING-type E3 ubiquitin transferase n=2 Tax=Triboli...	[more]
A0A024TPT3_9STRA	3.890e-8	40.91	Uncharacterized protein n=3 Tax=Aphanomyces invada...	[more]
A0A485L006_9STRA	4.000e-8	45.28	Aste57867_14187 protein n=1 Tax=Aphanomyces stella...	[more]
A0A6A6KAL3_HEVBR	9.650e-8	43.86	Uncharacterized protein n=1 Tax=Hevea brasiliensis...	[more]
A0A251L9Y5_MANES	9.820e-8	43.86	Uncharacterized protein (Fragment) n=1 Tax=Manihot...	[more]
A0A200R5T0_9MAGN	1.010e-7	45.10	SNF2-related n=1 Tax=Macleaya cordata TaxID=56857 ...	[more]
UPI000B786954	1.010e-7	43.86	helicase protein MOM1-like isoform X1 n=1 Tax=Heve...	[more]
UPI001CC680DB	1.010e-7	43.86	helicase protein MOM1 isoform X1 n=4 Tax=Manihot e...	[more]

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Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-mesarthrocarpus_Contig10149:5..2879-
coding sequence from alignment at D-mesarthrocarpus_Contig10149:5..2879-

protein sequence of mRNA_D-mesarthrocarpus_Contig10149.1.1

>prot_D-mesarthrocarpus_Contig10149.1.1 ID=prot_D-mesarthrocarpus_Contig10149.1.1|Name=mRNA_D-mesarthrocarpus_Contig10149.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=180bp
MRTRRRRTTRRNGPLPASHRFLARLGAGGVPPRAAPEPTMLTLSTRQGGS
GGGRAVPAQEGPPEQQRPPLAHRPSPPVLPLPLLLLHCSLRRAPPLGGGS
TSGASLHKGGGGTPTTTATTTTASSTEAAAAAAAHTAFVNYSSGAGVGAL
SHARRGRPPGIGSRGGRLGRPPKNVSVPYG

mRNA from alignment at D-mesarthrocarpus_Contig10149:5..2879-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-mesarthrocarpus_Contig10149.1.1 ID=mRNA_D-mesarthrocarpus_Contig10149.1.1|Name=mRNA_D-mesarthrocarpus_Contig10149.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2875bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10149:5..2879- (Discosporangium mesarthrocarpum MT17_79)
CTGTCCTGTCGCGAGCCCCGCAGCCAAAAAAAAAAAAAGAAAAAAAACTC
GAATCCCGTAAAACAATCCAACTTTTTGGTGCTGCTGCCCTGTGTTCTTT
CTTTACCACACACGGCACGAGGCAGGTCTGTGGAGAGAGCCAGTCAGCCG
GGACCATAATCCTATGCGACGGTGACAGGTGTGATGCTGAGTACCACCTG
TCTTGCCTATCCCCCCCAATAAGGGCCATCCCCCCGGGGAAGTGGTACTG
CCTCCCGTGCCTGTCCAAGAGGGGGGAGCAGGTACAAGTGCGCCTCAGTC
ATGTGAGTGGTGCACACACACAAACACACACACACACACACACACACACA
CACACACACTCACATGTGTGAAGAAAAAGGGCCTGGCCGTGGAGATGTAG
TCTACGCACAATAGCAGACGTCAGTCAGTCACGGCAGCGGTCACGTACCC
GCTGCATCCCTTCGTTGGCGTGTGTGTTTTCTGTCGGTTTTTGCCGTTTT
TTTTTTTTTTTTTTTTTGGTCCCTTCTTCGTTTTTTTTTTTTCTCTTCTT
TTCTTTTCTTTCTCTGAAGTTGCTGCGCCGCGAGAGAGACGAGCGCTTGA
GAGCGGTGCGCCTAGACCAGACTTCCATGACTAAAGATCTGGATCTTTAT
GTTTTCTCCGCCGAAGGAGGCAAGAGGCGATGTGTTGGGAGAGCTCGGCT
TTAGTGGGAGTAAATTCTCAGTGCTGTGAGTATCGAGTTGATTGATTATC
TATCTGTATTTCAATCCGTACGGTTCAATTCTTCCGAAACGGTTGTAGCA
CCAGGTAGAGGTAGAACAATCTCCTGTTTCTTGTTGGCGCTTTTTGGTTT
TCCTTTCCGGGGAAATGTTTTCTGGGGGCCAAGAGGGGCGGGAGGGCGGT
GATCCTTCCTGGTGATACCACCACACCTCGTTCCTCTCTGCCCCTGCTGT
ACCGCCTGCCCTAGCCCTAGCCCGGACCAGTACCCTAATCCTGTAGTGTG
TTAAGCCCCTCTCAAAATAGCACACTCAAAAAAAGTCTCCACCTCTCTAT
CCCCTCCCGAAAACAAAGTGAGAACACAATTCCAGAGAACTGAAACCCTG
CCACCAAACAAACATGCTTTTGTCAGCATTTTGTGTGCCTTGTGCCTAGG
TAGCCTGCCAGACTTTTGGTTGAAGTTTTTTTTCGTGTGCCCTGTGCGCG
GGTATCCTGTCGGGCCTCTATTGTTTTGTGTCCCTTGTGTACAGGGGGCA
CCCTACGTCGCTTCAAAGCACACGCGCTTATGCCGTGCCCACCCACGATA
TCTCTGAGGGAGGAGAGGAAAGCCTGCCCGCTCCACGCGGTTTGCTAAGT
ATATTTGCACTGGCGTGTACCGTTTCTCCACTCTTTTTGTTGGCTCTTTA
GTGCCGTTGCACCGTGTGCTTTCAGAGGAGGTGGGCAAGGCTGACTGTGT
GCCCTGCTCCATCACCGTCTTTGTACCCTGGCATGGACATATGCTGTTGT
GCATGCCGCCTATGCGTACTGCGTAGGGTTGGGGTTCGGGCAGGGGTTGG
GGTCGGGGTTGGGGTTAGGGTTGGAGATGGGGTTGGGGTTAGGATTGGGT
TTGGGGTTAGGGTTGGGGTTGGGGTTGGGGTTGGGGTTGGGGTTGGGGTT
GGGGTTAGGGTTGGGGTTGGGGTTGGGGTTGGGGTTGATGTTAGGGTTGG
GGTTAGGGTTGGGGTTGAGGTTAGGGTTAGGGTTAGGATTAGGGTTTGTT
AGCACACACCTTGTTGCTGTGTGTTTTTCGCTTGAGAAAAGGAGGATTTA
GTGCGGAGCTGCCGCTATGGGTGCATTTCCAGGGGGGGACTCGACGCACT
CCGGTTACTGTCTCTGCTTTTTTTTGCACCGGCATGCTCTTACCGCTACC
TATCTGCGCTGCGGTGCATATCCCGTTGCTGAAGGAGAACCAGAAGAAGG
CGGACAACGCGAAGAAACGGGCCCTTGCCGGCAAGCCACCGCTTCCTTGC
AAGGCTGGGGGCAGGAGGAGTGCCGCCCAGAGCAGCCCCGGAGCCAACAA
TGTTGACTCTCAGCACCAGGCAGGGAGGCAGCGGGGGGGGAAGGGCAGTC
CCGGCACAGGAAGGTGATGAAATCTGTTGTCAGCTTTGATCTGCACAGGG
AATGGGGTTAATTAGGGTCATGGTGTGGGGGCTCGCAATGAAGAGGGTGA
GTGTGTACTGTGATTGAAACCTGGTGGTGGTGGAGGTGGTGGTGGCACAG
CAACAGGGAGTTGGTCCCTTTCTCTTTCTCTTTCCTCTCTCTCTTTCTCT
TTTCCTCCCCCCCCACCCAAAGCTTCCCAGAGCTGCCCAGATCTTCCCAG
AGCTTCCCTGTTCCTCGGCATAGCCACACCTTTATTCGTCAGATGGTACC
ACTACAATGCTAAAGTTGTAGGATAACCTCCCTTCCCACTTAGAACCCCA
AACCCAACCCTCACCCCCCCATCCCCCCCCTCAGGGCCCCCAGAGCAGCA
GCGCCCCCCCCTCGCACATCGACCCAGCCCACCCGTGCTGCCGCTGCCGC
TGCTACTGCTGCATTGCTCGCTGCGTCGAGCTCCTCCTCTAGGGGGGCAG
GGGGGGCAGGGGGAAGTGCTGGTGGCAGTGGCAGCACTAGTGGCGCGAGC
CTCCACAAGGGGGGGGGGGGCACACCTACCACCACTGCCACCACCACCAC
TGCCTCATCAACGGAGGCTGCGGCAGCCGCTGCTGCCCACACTGCATTTG
TGAACTACAGCTCTGGGGCCGGGGTGGGTGCTCTCAGCCATGCCCGCAGG
GGGCGGCCCCCAGGGATAGGGAGCAGAGGGGGGCGGCTCGGGCGCCCGCC
CAAGAATGTGTCTGTGCCGTACGGG

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10149:5..2879-

>mRNA_D-mesarthrocarpus_Contig10149.1.1 ID=mRNA_D-mesarthrocarpus_Contig10149.1.1|Name=mRNA_D-mesarthrocarpus_Contig10149.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=540bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10149:5..2879- (Discosporangium mesarthrocarpum MT17_79)
ATGAGAACCAGAAGAAGGCGGACAACGCGAAGAAACGGGCCCTTGCCGGC
AAGCCACCGCTTCCTTGCAAGGCTGGGGGCAGGAGGAGTGCCGCCCAGAG
CAGCCCCGGAGCCAACAATGTTGACTCTCAGCACCAGGCAGGGAGGCAGC
GGGGGGGGAAGGGCAGTCCCGGCACAGGAAGGGCCCCCAGAGCAGCAGCG
CCCCCCCCTCGCACATCGACCCAGCCCACCCGTGCTGCCGCTGCCGCTGC
TACTGCTGCATTGCTCGCTGCGTCGAGCTCCTCCTCTAGGGGGTGGCAGC
ACTAGTGGCGCGAGCCTCCACAAGGGGGGGGGGGGCACACCTACCACCAC
TGCCACCACCACCACTGCCTCATCAACGGAGGCTGCGGCAGCCGCTGCTG
CCCACACTGCATTTGTGAACTACAGCTCTGGGGCCGGGGTGGGTGCTCTC
AGCCATGCCCGCAGGGGGCGGCCCCCAGGGATAGGGAGCAGAGGGGGGCG
GCTCGGGCGCCCGCCCAAGAATGTGTCTGTGCCGTACGGG