mRNA_D-mesarthrocarpus_Contig10144.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10144.3.1 vs. uniprot
Match: A0A4P9W163_9FUNG (DNA-directed RNA polymerase n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W163_9FUNG) HSP 1 Score: 217 bits (553), Expect = 2.860e-61 Identity = 144/420 (34.29%), Postives = 209/420 (49.76%), Query Frame = 1 Query: 1 GTWRLHWMGIIASITPEDVSSIEERYLALDSTDV-TLHVDDTNHVINVGTSTRCLIRP---RTVPESLHTPCSGISYDSMLISHLELTANKFTEVIDRSDPEQFVNLLTRMTPYVFHNQPPRPSLALGMSMIDSCSDSSINVTEPGVSLIVIFMNH--------PVNFEDAAIISEAVNKQGLCKH-GHVFHPVPDDTELPATGSKVTSSNSWWRPSTEGTVIGSGVSTDNRRYISALLVEMSPSVGDKWVTPHRQKFVISRILPENDMPTCTCRVTKAVFKPRVILSSSCIFNRTTFGQLYEGFKAAMAVDISSYDPRDPGASLIASCRDDMYDFQRRGLVCQSVDVNYGVCRFWQLSHPVRDKQHYMSKIPRSLRPLRGRLSVEGVSLGEMEVQALMTKGHRNCMKELMDKNDMVIFK 1221 G W H G+I ++ E V+ + Y+ + D ++ V + ++++ + C+++P S HT DS L H T I + F +RM PY+ NQPPRP +A M++ C ++ +S + +H N+EDA I +N GL H G V+HP+ D ++ PATG V S +WWRP E I + ++RR + A L VGDK T H QKF ISRILP+N+MP C C T A+F P VI++SS + NR T GQLYE + AV ++P D C + + R Q V +YG+ FWQL H VRDKQ YMS +P S +RGRL GV +GEM++ A+++ G C+ EL D+V+ + Sbjct: 108 GMWIFHCCGVIKLVSAEGVAQMIRAYVTMKGHDSPSMRVFSEHRLVSLAVTPGCIMKPVLNDLTTASSHTVAECNWIDS-LHRHKPSTYTGANLPITILSLQSF-RTFSRMVPYLAFNQPPRPIMASNMAVQAMCQPK-VSAATTRLSDAGLLASHCWYFTRTLHYNYEDAIIAIAKLNDMGLLAHEGFVYHPMMDYSDSPATGQPVPESVTWWRPYDESIPIRQAFTVNSRRAVVAQLNGAGIRVGDKLATHHGQKFTISRILPDNEMPKCVCATTGALFTPHVIVASSSVHNRVTPGQLYESWMGMSAVHRHDFNPIDRW-----HCTTPLMVGKNRWST-QCVSADYGIAHFWQLYHLVRDKQQYMSGVPSSSSAIRGRLRESGVQVGEMDIHAMLSLGLIQCLGELSASADVVVVQ 518
BLAST of mRNA_D-mesarthrocarpus_Contig10144.3.1 vs. uniprot
Match: I1CVV8_RHIO9 (DNA-directed RNA polymerase n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CVV8_RHIO9) HSP 1 Score: 214 bits (546), Expect = 4.280e-58 Identity = 145/451 (32.15%), Postives = 215/451 (47.67%), Query Frame = 1 Query: 7 WRLHWMGIIASITPEDVSSIEERYLALDSTDV-TLHVDDTNHVINVGTSTRCLIRPRTVPESLHTPCSGIS-YDSMLISHLELTANKFTEVIDRSDPEQFVNLLTRMTPYVFHNQPPRPSLALGMSMIDSCSD-----SSI--------------------------NVTEPGVSLIVIFMNHPVNFEDAAIISEAVNKQGLCKHGHVF-HPVPDDTELPATGSKVTSSNSWWRPSTEGTVIGSGVSTDNRRYISALLVEMSPSVGDKWVTPHRQKFVISRILPENDMPTCTCRVTKAVFKPRVILSSSCIFNRTTFGQLYEGFKAAMAVDISSYDPRDPGASLIASCRDDMYDFQRRGLVCQ---------------SVDVNYGVCRFWQLSHPVRDKQHYMSKIPRSLRPLRGRLSVEGVSLGEMEVQALMTKGHRNCMKELMDKNDMV 1212 W L +G I I+ DV + +L + +LHV + V+ + + CL++P V E L+ S + YDS+L + +T + P +++ + P+VFH++PPRP LA MS C+ S+I +V PGV L+ +F N N+ED+ I+S+ VN +G+ H + HPVP + G + S WWRP+ + VI G S + RY+ A + +VGDK T H QKF +S I P + MPTC T FKP +I++SS I NR T GQLYE + A + +DP + ++ D + R +C + ++YG+CRFW L+H RDKQHY+S +PR RGRL V LGEMEV ++ G + + EL +DMV Sbjct: 563 WTLFMLGYIQKISKLDVFEMTATWLTQYGPNAPSLHVFEDKKVVVIAITPGCLMKP--VCEELYKDNSNVKWYDSVLYNDQSMTLFIDPDGDLFYHPMEYMRTFCHLVPFVFHDEPPRPLLAGSMSTQAICNPRVELFSTIKPKHVIPPIVRTPLMNKYVHDLARLPHVDIPGVELLTLFCNSRGNYEDSVIVSQYVNDRGIFAHTSLINHPVPVGVDRLKAGDVIGSETKWWRPAQDAIVIKEGFSKNKTRYVCARMTSNDINVGDKIGTQHGQKFTVSEIRPIDQMPTCFDPKTGKTFKPHIIVASSSIHNRITLGQLYEAYTAMSVIGDVDFDPLNVDDYIVLDT-DGRFPSDIRATMCNIQIGDTRITHPNISDDLYMDYGICRFWLLAHLSRDKQHYLSHVPRGPTIPRGRLHGSSVRLGEMEVHVMLMNGLIHTLSELTMSSDMV 1010
BLAST of mRNA_D-mesarthrocarpus_Contig10144.3.1 vs. uniprot
Match: F0X1L2_9STRA (DNA-directed RNA polymerase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X1L2_9STRA) HSP 1 Score: 199 bits (505), Expect = 4.970e-53 Identity = 124/361 (34.35%), Postives = 179/361 (49.58%), Query Frame = 1 Query: 274 IDRSDPEQFVNLLTRMTPYVFHNQPPRPSLALGMSMIDSC---------------------------------SDSSINVTEPGVSLIVIFMNHPVNFEDAAIISEAVNKQGLCK-HGHVFHPVPDDTELPATGSKVTSSNSWWRPSTEGTVIGSGVSTDNRRYISALLVEMSPSVGDKWVTPHRQKFVISRILPENDMPTCTCRVTKAVFKPRVILSSSCIFNRTTFGQLYEGFKAAMAVDISSYDPR--------DP-GASLIASCRDDMYDFQRRGLVCQSVDVNYGVCRFWQLSHPVRDKQHYMSKIPRSLRPLRGRLSVEGVSLGEMEVQALMTKGHRNCMKELMDKNDMVIFKLC 1227 + R+D L + P+ ++PPRP LA + C SD I+V PGV L+V+F N N+ED +IS+ N+ GL K V+HPV + T G K+T++++W+RP + TV+ GVS RY++A + S +GDK T H QK ++SRI E+D+P TC T A KP +++++S + NR T GQLYE + V +DPR DP A + + R Y G +YG+C FWQLSH RDKQHY+S++PR L RG+L GV GEME ++++ G +C+ L D D+ LC Sbjct: 382 LPRNDVRDNTRTLFHLFPFFADDEPPRPGLASSICTQAICKPRVELTSTIASVDTYLPVVRTPLMQQVVEQLPSDRPISV--PGVPLLVVFCNMRYNYEDGVVISKHANELGLFKTRSIVYHPVSEGTAAMRPGDKITAAHTWFRPHCDATVLRQGVSVRLARYVAAEMHSDSLQLGDKLATSHGQKLIVSRIADESDLPVFTCTRTGARVKPHIVVAASSVHNRGTVGQLYEAWAGMECVGDVDFDPRTNRRYCVYDPFDADAVPTKRYSCY-VSEPGADTHVAVADYGICHFWQLSHVSRDKQHYVSEVPRRLSTRRGKLRGAGVRFGEMETLSMLSGGLVHCLSYLSDNGDLADVDLC 739
BLAST of mRNA_D-mesarthrocarpus_Contig10144.3.1 vs. uniprot
Match: A0A4V1IS41_9FUNG (DNA-directed RNA polymerase (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4V1IS41_9FUNG) HSP 1 Score: 78.6 bits (192), Expect = 1.900e-13 Identity = 61/223 (27.35%), Postives = 87/223 (39.01%), Query Frame = 1 Query: 319 MTPYVFHNQPPRPSLALGMSMIDSC-------------------------------SDSSINVTEPGVSLIVIFMNHPVNFEDAAIISEAVNKQGLCKHGHVFHPVPDDTELPATGSKVTSSNSWWRPSTEGTVIGSGVSTDNRRYISALLVEMSPSVGDKWVTPHRQKFVISRILPENDMPTCTCRVTKAVFKPRVILSSSCIFNRTTFGQLYEGFKAAMAV 894 M P + NQPPRP +A M++ C + +I T G L+V++ N N+EDA I++ +N + H EG + G+G+ VGDK T H QKF IS ILP+++MP C C T+A+F P I++SS + R T GQLYE + V Sbjct: 4 MVPCLAFNQPPRPIMASNMAVQAMCQPKVSAATTVKPKHTSQPVVRTLLMHSFITTATETIRHTIAGFPLLVLYANMDYNYEDAIIVNAKLNDMAVFAH-------------------------------EGFLNGAGL-----------------RVGDKLETHHGQKFTISSILPDDEMPKCVCATTEALFTPHFIVASSSVHYRVTPGQLYESWMGMSGV 178
BLAST of mRNA_D-mesarthrocarpus_Contig10144.3.1 vs. uniprot
Match: A0A7J3RBE6_9ARCH (DNA-directed RNA polymerase n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A7J3RBE6_9ARCH) HSP 1 Score: 70.5 bits (171), Expect = 2.140e-9 Identity = 55/191 (28.80%), Postives = 81/191 (42.41%), Query Frame = 1 Query: 691 PSVGDKWVTPHRQKFVISRILPENDMPTCTCRVTKAVFKPRVILSSSCIFNRTTFGQLYEGFKAAMAVDISSYDPRDP----------GASLIASCRDDMYDFQRRGLVCQSVDVNY--GVCRFWQLSHPVRDKQHYMSKIPRSL---RPLRGRLSVEGVSLGEMEVQALMTKGHRNCMKELMDKNDMVIF 1218 P VGDKW + H QK V+SRI+PE D+P T +P +I S + + R T + E Y P A L RDD + G Q + G + +L H V DK ++ P +L +P G+ G+ LGEME +A+M G +KE D + +++ Sbjct: 354 PEVGDKWSSKHGQKGVLSRIVPEEDIP-----FTSTGIRPDIIFSPNGLPKRMTVSHMIEALAGKFGALAGRYIDGTPFLNEPVKDIREALLSLGFRDDGTEILYDGRTGQRIPARIFVGNIYYMRLKHQVADKIQTRARGPVTLLTRQPTEGKAKEGGLRLGEMEKEAIMAHGASLLLKERFDSDKEIVW 539
BLAST of mRNA_D-mesarthrocarpus_Contig10144.3.1 vs. uniprot
Match: F4RC27_MELLP (DNA-directed RNA polymerase n=1 Tax=Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) TaxID=747676 RepID=F4RC27_MELLP) HSP 1 Score: 64.3 bits (155), Expect = 5.220e-8 Identity = 52/168 (30.95%), Postives = 75/168 (44.64%), Query Frame = 1 Query: 367 LGMSMIDSCSDSSINVTEPGVSLIVIFMNHPVNFEDAAIISEAVNKQGLCKHGHVFHPVPDDTELPATGSKVTSSNSWWRPSTEGTVIGSGVSTDNRRYISALLVEMSPSVGDKWVTPHRQKFVISRILPENDMPTCTCRVTKAVFKPRVILSSSCIFNRTTFGQLYE 870 L S+I+ D+ ++ PGV ++V+F N N+EDA II E + S++ W R T+ SG +GDK+ TPH QKFV+S+IL ++ MP+ T VFKPRVI++S I GQLY+ Sbjct: 122 LMQSIIEKVKDNPY-ISIPGVPMLVVFSNMTYNYEDALIIGEGLK---------------------------LSTSVWERQ--RATMESSGA-----------------RIGDKFGTPHGQKFVLSQILSKDKMPSFQGCKTGEVFKPRVIIASYSIHKCGAMGQLYQ 242
BLAST of mRNA_D-mesarthrocarpus_Contig10144.3.1 vs. uniprot
Match: K2CYQ2_9BACT (DNA-directed RNA polymerase subunit beta n=5 Tax=Bacteria TaxID=2 RepID=K2CYQ2_9BACT) HSP 1 Score: 64.7 bits (156), Expect = 1.950e-7 Identity = 64/192 (33.33%), Postives = 88/192 (45.83%), Query Frame = 1 Query: 694 SVGDKWVTPHRQKFVISRILPENDMPTCTCRVTKAVFKPRVILSSSCIFNRTTFGQLYE---GFKAA-----MAVDISSYDPRD------PGASLIASCRDDMYDFQRRGLVCQSVDVNYGVCRFWQLSHPVRDKQHYMSKIPRSL---RPLRGRLSVEGVSLGEMEVQALMTKGHRNCMKELMD-KNDMVI 1215 + GDK H K VIS+I+PE DMP + I+SS + +R GQL E GF A +A + P + A+L S + + D + Q V V Y F +L H V DK H S P SL +PL G+ + G LGEMEV AL G N ++E++ K+D V+ Sbjct: 837 TAGDKLAGRHGNKGVISKIVPEADMPHLEDGTPVDI-----IISSVTVLSRMNLGQLLEAHLGFAAKKLGYKVAAPVFENLPEEVLIEQLKKANLPVSGKSKLVDGRTGEYFKQDVVVGYAY--FLKLIHMVEDKTHARSTGPYSLVTQQPLGGKAQMGGQRLGEMEVWALEAYGAANVLQEMLTLKSDDVV 1021
BLAST of mRNA_D-mesarthrocarpus_Contig10144.3.1 vs. uniprot
Match: A0A3R6ZPR2_9BACT (DNA-directed RNA polymerase subunit beta n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A3R6ZPR2_9BACT) HSP 1 Score: 64.7 bits (156), Expect = 1.950e-7 Identity = 67/193 (34.72%), Postives = 89/193 (46.11%), Query Frame = 1 Query: 694 SVGDKWVTPHRQKFVISRILPENDMPTCTC-RVTKAVFKPRVILSSSCIFNRTTFGQLYE---GFKAA-----MAVDISSYDPRD------PGASLIASCRDDMYDFQRRGLVCQSVDVNYGVCRFWQLSHPVRDKQHYMSKIPRSL---RPLRGRLSVEGVSLGEMEVQALMTKGHRNCMKELMD-KNDMVI 1215 +VGDK H K VISRI+PE DMP V + P ILS R GQL E GF A +A + P + A L + + + D + Q D+ G+ F +L H V DKQH S P S+ +PL G+ + G LGEMEV AL G N ++E++ K+D VI Sbjct: 839 TVGDKLAGRHGNKGVISRIVPEIDMPHLEDGTVVDIIISPVTILS------RMNLGQLLEAHLGFAAEKLGYKVAAPVFERIPEEVIIEELKKAGLPENGKMKLIDGRTGEYFDQ--DIVVGLAYFLKLIHMVEDKQHARSTGPYSMVTQQPLGGKAQMGGQRLGEMEVWALEAYGAANILQEMLTTKSDDVI 1023
BLAST of mRNA_D-mesarthrocarpus_Contig10144.3.1 vs. uniprot
Match: UPI001AD2B6A0 (Partial DNA-directed RNA polymerase subunit beta n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI001AD2B6A0) HSP 1 Score: 63.2 bits (152), Expect = 4.620e-7 Identity = 67/210 (31.90%), Postives = 93/210 (44.29%), Query Frame = 1 Query: 616 EGTVIGSGVSTDNRRYISALLVEMSPSVGDKWVTPHRQKFVISRILPENDMPTCTCRVTKAVFKPRVILSSSCIFNRTTFGQLYEGFK--AAMAVDISSYDPRDPGAS------------LIASCRDDMYDFQRRGLVCQSVDVNYGVCRFWQLSHPVRDKQHYMSKIPRSL---RPLRGRLSVEGVSLGEMEVQALMTKGHRNCMKELM 1194 +G + GV+ + Y++ ++ VGDK H K VISRILPE DMP +++L+ + +R GQ+ E AA A+ +S P GAS L S + ++YD Q V V Y +LSH V DK H S P SL +PL G+ G GEMEV AL G ++EL+ Sbjct: 336 KGDELAPGVNKTVKVYVA---MKRKLQVGDKMAGRHGNKGVISRILPEEDMPYLPDGTPV-----QIVLNPLGVPSRMNVGQILETHLGWAAQALGLSIASPVFDGASEEEIRALLEKSNLPRSGKTELYDGMTGDRFEQKVTVGY--IYMLKLSHLVDDKIHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELL 535
BLAST of mRNA_D-mesarthrocarpus_Contig10144.3.1 vs. uniprot
Match: A0A3D3T8K4_9FIRM (DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A3D3T8K4_9FIRM) HSP 1 Score: 63.2 bits (152), Expect = 6.160e-7 Identity = 67/214 (31.31%), Postives = 95/214 (44.39%), Query Frame = 1 Query: 616 EGTVIGSGVSTDNRRYISALLVEMSPSVGDKWVTPHRQKFVISRILPENDMPTCTCRVTKAVFKPR-----VILSSSCIFNRTTFGQLYE----------GFKAAMAVDISSYDPRDPGASL-IASCRDDMYDFQRRGLVCQSVD--VNYGVCRFWQLSHPVRDKQHYMSKIPRSL---RPLRGRLSVEGVSLGEMEVQALMTKGHRNCMKELM 1194 EG + GV+ R YI+ + SVGDK H K V+SRILP+ DMP F P ++L+ + +R GQ+ E G+K A + + D +D +L +A R+D + G + D V G F +L H V DK H S P SL +PL G+ G GEMEV AL G ++E++ Sbjct: 942 EGAELAPGVNQVVRVYIAQ---KRKISVGDKMAGRHGNKGVVSRILPQEDMP----------FLPDGTPLDIVLNPLGVPSRMNIGQVLEVHLGYAAQALGWKVATPI-FNGADEQDIADTLKLAGLREDGKSWLYDGRTGERFDNPVTVGYVYFLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEIL 1141 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10144.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10144.3.1 >prot_D-mesarthrocarpus_Contig10144.3.1 ID=prot_D-mesarthrocarpus_Contig10144.3.1|Name=mRNA_D-mesarthrocarpus_Contig10144.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=405bp MGIIASITPEDVSSIEERYLALDSTDVTLHVDDTNHVINVGTSTRCLIRPback to top mRNA from alignment at D-mesarthrocarpus_Contig10144:1594..2973+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10144.3.1 ID=mRNA_D-mesarthrocarpus_Contig10144.3.1|Name=mRNA_D-mesarthrocarpus_Contig10144.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1380bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10144:1594..2973+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10144:1594..2973+ >mRNA_D-mesarthrocarpus_Contig10144.3.1 ID=mRNA_D-mesarthrocarpus_Contig10144.3.1|Name=mRNA_D-mesarthrocarpus_Contig10144.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1215bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10144:1594..2973+ (Discosporangium mesarthrocarpum MT17_79)back to top |