mRNA_D-mesarthrocarpus_Contig10143.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_D-mesarthrocarpus_Contig10143.2.1
Unique Name	mRNA_D-mesarthrocarpus_Contig10143.2.1
Type	mRNA
Organism	Discosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)

Homology

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BLAST of mRNA_D-mesarthrocarpus_Contig10143.2.1 vs. uniprot
Match: D7G5G8_ECTSI (SPG1, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G8_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 3.090e-28
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 1

Query:    4 EQARKFARAMHAPLIFTSASHSINVQKMFKVVLSKVFDLRCNLDEIEGAGEPLLLF-KEDGSS 189
            +QARKFA+AMHAPLIFTSASHSINVQKMFKVVLS+VFDLRCNLDEI GAGEPLLLF KE+G +
Sbjct:  145 KQARKFAKAMHAPLIFTSASHSINVQKMFKVVLSRVFDLRCNLDEISGAGEPLLLFSKEEGEA 207

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BLAST of mRNA_D-mesarthrocarpus_Contig10143.2.1 vs. uniprot
Match: A0A835YI98_9STRA (SPG1, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI98_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.190e-25
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 1

Query:    4 EQARKFARAMHAPLIFTSASHSINVQKMFKVVLSKVFDLRCNLDEIEGAGEPLLLFKEDGSSKS 195
            + ARKFA AMHAPLIFTSASHSINVQKMFKVVLSKVFDLRCNL++IE  GEPLLLF +  ++ S
Sbjct:  145 KMARKFAAAMHAPLIFTSASHSINVQKMFKVVLSKVFDLRCNLEQIENVGEPLLLFTDSPTAGS 208

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BLAST of mRNA_D-mesarthrocarpus_Contig10143.2.1 vs. uniprot
Match: A0A6U3ZUB0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3ZUB0_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 8.280e-22
Identity = 42/56 (75.00%), Postives = 52/56 (92.86%), Query Frame = 1

Query:    4 EQARKFARAMHAPLIFTSASHSINVQKMFKVVLSKVFDLRCNLDEIEGAGEPLLLF 171
            +QARKFA+AM APL+FTSA+HSINVQK+FKVVL++VFDLRC L+ IEG G+PLL+F
Sbjct:  150 KQARKFAKAMKAPLVFTSATHSINVQKLFKVVLARVFDLRCTLENIEGVGDPLLIF 205

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BLAST of mRNA_D-mesarthrocarpus_Contig10143.2.1 vs. uniprot
Match: A0A7S2CL26_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CL26_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.790e-21
Identity = 42/56 (75.00%), Postives = 52/56 (92.86%), Query Frame = 1

Query:    4 EQARKFARAMHAPLIFTSASHSINVQKMFKVVLSKVFDLRCNLDEIEGAGEPLLLF 171
            +QARKFA+AM APL+FTSA+HS+NVQK+FKVVL+KVFDL+C LD+IE  GEPLL+F
Sbjct:  170 KQARKFAKAMKAPLVFTSATHSVNVQKLFKVVLAKVFDLKCTLDKIEEVGEPLLIF 225

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BLAST of mRNA_D-mesarthrocarpus_Contig10143.2.1 vs. uniprot
Match: A0A177UFL7_9BASI (Uncharacterized protein n=1 Tax=Tilletia walkeri TaxID=117179 RepID=A0A177UFL7_9BASI)

HSP 1 Score: 88.6 bits (218), Expect = 5.010e-20
Identity = 40/58 (68.97%), Postives = 51/58 (87.93%), Query Frame = 1

Query:    4 EQARKFARAMHAPLIFTSASHSINVQKMFKVVLSKVFDLRCNLDEIEGAGEPLLLFKE 177
            +QAR+FARAM APLIF+S SHSINVQK+FK++LSK FDL+C + EI+G GEPLL++ E
Sbjct:  180 KQARRFARAMKAPLIFSSTSHSINVQKIFKIILSKAFDLKCTIPEIKGIGEPLLIYVE 237

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BLAST of mRNA_D-mesarthrocarpus_Contig10143.2.1 vs. uniprot
Match: A0A316WBE5_9BASI (Septum-promoting GTP-binding protein n=1 Tax=Ceraceosorus guamensis TaxID=1522189 RepID=A0A316WBE5_9BASI)

HSP 1 Score: 87.4 bits (215), Expect = 7.760e-20
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 1

Query:    7 QARKFARAMHAPLIFTSASHSINVQKMFKVVLSKVFDLRCNLDEIEGAGEPLLLF 171
            QAR+FARAM APLIF+S SHSINVQK+FK++LSK FDL+C + EI+G GEPLL++
Sbjct:  127 QARRFARAMKAPLIFSSTSHSINVQKIFKIILSKAFDLKCTIPEIKGVGEPLLIY 181

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BLAST of mRNA_D-mesarthrocarpus_Contig10143.2.1 vs. uniprot
Match: A0A6V1K250_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K250_HETAK)

HSP 1 Score: 87.0 bits (214), Expect = 9.050e-20
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 1

Query:    4 EQARKFARAMHAPLIFTSASHSINVQKMFKVVLSKVFDLRCNLDEIEGAGEPLLLF 171
            +QARKFA+AM APL+FTS+ HSINVQKMFK+VLS+VF+LRC L  I+  GEPLLLF
Sbjct:  143 KQARKFAKAMKAPLVFTSSPHSINVQKMFKLVLSRVFELRCTLQPIKNVGEPLLLF 198

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BLAST of mRNA_D-mesarthrocarpus_Contig10143.2.1 vs. uniprot
Match: A0A7S3H350_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H350_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 9.630e-20
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 1

Query:   10 ARKFARAMHAPLIFTSASHSINVQKMFKVVLSKVFDLRCNLDEIEGAGEPLLLF 171
            ARK+A+AM APL+F+SASHSINVQKMFK+VLSKVFDL+C + EI   GEPLL+F
Sbjct:   76 ARKYAKAMKAPLVFSSASHSINVQKMFKIVLSKVFDLKCTVAEIVEVGEPLLIF 129

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BLAST of mRNA_D-mesarthrocarpus_Contig10143.2.1 vs. uniprot
Match: A0A0P1BL34_9BASI (Gtp binding protein n=1 Tax=Ceraceosorus bombacis TaxID=401625 RepID=A0A0P1BL34_9BASI)

HSP 1 Score: 87.4 bits (215), Expect = 1.050e-19
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 1

Query:    7 QARKFARAMHAPLIFTSASHSINVQKMFKVVLSKVFDLRCNLDEIEGAGEPLLLF 171
            QAR+FARAM APLIF+S SHSINVQK+FK++LSK FDL+C + EI+G GEPLL++
Sbjct:  166 QARRFARAMKAPLIFSSTSHSINVQKIFKIILSKAFDLKCTIPEIKGVGEPLLIY 220

[Close]

BLAST of mRNA_D-mesarthrocarpus_Contig10143.2.1 vs. uniprot
Match: A0A177VWS1_9BASI (Uncharacterized protein n=3 Tax=Tilletia TaxID=13289 RepID=A0A177VWS1_9BASI)

HSP 1 Score: 87.4 bits (215), Expect = 1.440e-19
Identity = 39/56 (69.64%), Postives = 50/56 (89.29%), Query Frame = 1

Query:    4 EQARKFARAMHAPLIFTSASHSINVQKMFKVVLSKVFDLRCNLDEIEGAGEPLLLF 171
            +QAR+FARAM APLIF+S SHSINVQK+FK++LSK FDL+C + EI+G GEPLL++
Sbjct:  182 KQARRFARAMKAPLIFSSTSHSINVQKIFKIILSKAFDLKCTIPEIKGIGEPLLIY 237

The following BLAST results are available for this feature:

BLAST of mRNA_D-mesarthrocarpus_Contig10143.2.1 vs. uniprot

BLAST of mRNA_D-mesarthrocarpus_Contig10143.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
D7G5G8_ECTSI	3.090e-28	87.30	SPG1, Ras superfamily GTPase n=1 Tax=Ectocarpus si...	[more]
A0A835YI98_9STRA	4.190e-25	78.13	SPG1, ras superfamily GTPase n=1 Tax=Tribonema min...	[more]
A0A6U3ZUB0_9STRA	8.280e-22	75.00	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S2CL26_9STRA	1.790e-21	75.00	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A177UFL7_9BASI	5.010e-20	68.97	Uncharacterized protein n=1 Tax=Tilletia walkeri T...	[more]
A0A316WBE5_9BASI	7.760e-20	70.91	Septum-promoting GTP-binding protein n=1 Tax=Cerac...	[more]
A0A6V1K250_HETAK	9.050e-20	73.21	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S3H350_9STRA	9.630e-20	74.07	Hypothetical protein n=1 Tax=Spumella elongata Tax...	[more]
A0A0P1BL34_9BASI	1.050e-19	70.91	Gtp binding protein n=1 Tax=Ceraceosorus bombacis ...	[more]
A0A177VWS1_9BASI	1.440e-19	69.64	Uncharacterized protein n=3 Tax=Tilletia TaxID=132...	[more]

Pages

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	2880.D7G5G8
Preferred name	spg1
PFAMs	Ras
Model size	198
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06682,ko:K07976
KEGG Pathway	ko04111,map04111
Hectar predicted targeting category	other localisation
GOs	GO:0000075,GO:0000166,GO:0000226,GO:0000278,GO:0000280,GO:0000910,GO:0001100,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005815,GO:0005816,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007088,GO:0007093,GO:0007096,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007346,GO:0008104,GO:0008150,GO:0009987,GO:0010458,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0010973,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022402,GO:0023052,GO:0030071,GO:0031028,GO:0031577,GO:0031578,GO:0031991,GO:0032465,GO:0032467,GO:0032506,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032954,GO:0032955,GO:0032956,GO:0032970,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0034613,GO:0035556,GO:0035639,GO:0036094,GO:0040001,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0044732,GO:0044770,GO:0044772,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045930,GO:0045931,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051293,GO:0051301,GO:0051302,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060341,GO:0065007,GO:0070727,GO:0071174,GO:0071840,GO:0090068,GO:0097159,GO:0097367,GO:0110020,GO:0140014,GO:1901265,GO:1901363,GO:1901891,GO:1901893,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902363,GO:1902412,GO:1902542,GO:1902850,GO:1903047,GO:1903436,GO:1903438,GO:1903490,GO:1903827,GO:1905818,GO:1905819,GO:2000816,GO:2001251
Exons	2
Evalue	5.06e-29
EggNOG OGs	COG1100@1\|root,KOG1673@2759\|Eukaryota
Description	septation initiation signaling
Cds size	198
COG category	S
BRITE	ko00000,ko00001,ko04031

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-mesarthrocarpus_Contig10143:2349..3351-
coding sequence from alignment at D-mesarthrocarpus_Contig10143:2349..3351-

protein sequence of mRNA_D-mesarthrocarpus_Contig10143.2.1

>prot_D-mesarthrocarpus_Contig10143.2.1 ID=prot_D-mesarthrocarpus_Contig10143.2.1|Name=mRNA_D-mesarthrocarpus_Contig10143.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=66bp
MEQARKFARAMHAPLIFTSASHSINVQKMFKVVLSKVFDLRCNLDEIEGA
GEPLLLFKEDGSSKS*

mRNA from alignment at D-mesarthrocarpus_Contig10143:2349..3351-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-mesarthrocarpus_Contig10143.2.1 ID=mRNA_D-mesarthrocarpus_Contig10143.2.1|Name=mRNA_D-mesarthrocarpus_Contig10143.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1003bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10143:2349..3351- (Discosporangium mesarthrocarpum MT17_79)
ATGGAGCAGGCACGAAAGTTTGCCAGGGCCATGCATGCCCCCCTAATCTT
CACCTCAGCGTCACACTCCATCAACGTTCAGAAGGTAACATTCACAGTGT
GGAAAAGAAACGTGATAAATTAATAAGTGAGGCGTTAGTTAGGTGAGGTT
TATAGGCTGTCCTTGATCTTAACCTTGTCGCTGCACCCCATCGACGTCCA
GGAGGTAATGATGAATAAGAGATAATGACTGACTGTAACTGTAACTATTA
TTGCAATAAGTATGAACGTCAAGGCCAGTGTGGTGGCCGTTTCAGCCTTT
TTGGTGCGCACAATCCACCTTTTTGAGGATCTGTCCTTGCGCATCCAGAT
CTGTTGCTTTTATCTCTCACTGCTTTTTTCCAATCATGGTGACCTCTCGT
CTGTTCTAGTCGTTCAAACTGTGTAGTGATGGTGATAGTAATAGTAATAT
AGCAATAGTACTGCTATTAATATTAGGGATAGACATATGTCAGGGGGGGG
GGGATGGGGAGGGGTAGGAAGTAGATTTTTTTCAGGTGTGTTTTATTCTT
CTTTCTTTTTGTTCTTGTTCTTTTTTCAGGTGTACCGCATGCAGCGCCCC
GCAAAAGAATCCCACAAATCACAGCCGCCCAAAGATCTTACCAACACCCC
CCCAATGGCATATGTACCTTTTTTTATTCTTTTTTCCCTTTTCTTTCGCC
GCCCGGCTGTTGGGCTGTTTGACACCCATCATGGTGGCATGCATACCCTC
CCCATGCCGAGCCTTGCCCTCAGTGTGAAGGTGGTGCTGTCTAAGGCCTT
CCACTTGAACCCTAGCTCCTCCCCAACCCAACCAACCCGAACCTTAAACC
CTCACCCTCACCGCCCACACACAACCTCTTCCCCTCCAGATGTTCAAGGT
GGTGCTGTCTAAGGTCTTTGACCTACGGTGTAATCTTGACGAGATTGAAG
GGGCAGGGGAGCCACTCCTGTTGTTCAAGGAAGACGGAAGCTCCAAGTCT
TAG

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10143:2349..3351-

>mRNA_D-mesarthrocarpus_Contig10143.2.1 ID=mRNA_D-mesarthrocarpus_Contig10143.2.1|Name=mRNA_D-mesarthrocarpus_Contig10143.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=198bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10143:2349..3351- (Discosporangium mesarthrocarpum MT17_79)
ATGGAGCAGGCACGAAAGTTTGCCAGGGCCATGCATGCCCCCCTAATCTT
CACCTCAGCGTCACACTCCATCAACGTTCAGAAGATGTTCAAGGTGGTGC
TGTCTAAGGTCTTTGACCTACGGTGTAATCTTGACGAGATTGAAGGGGCA
GGGGAGCCACTCCTGTTGTTCAAGGAAGACGGAAGCTCCAAGTCTTAG