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Homology
BLAST of mRNA_D-mesarthrocarpus_Contig101.5.1 vs. uniprot
Match: A0A836CQ15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ15_9STRA) HSP 1 Score: 121 bits (303), Expect = 4.790e-28 Identity = 68/180 (37.78%), Postives = 100/180 (55.56%), Query Frame = 1 Query: 103 TFIPRSDFSVKVESGLRTALAVSLSFIWRTHGPFNGNLAFFAGVVAIVSVGKTAGETIDRNLQLTCGAILGILSAFLVRWLGSCGRVLGVIAFFFGILVVVSNPWVSPLGKKFGSLAVVILTLTPGAAATNAFPLEWLLSALTWVRTHVEGGVFALVSLLLPYPRFALREGSLRAQVTAR 642
TF S+F +E+ LRT LA + S W GP L FF+ VVAIV TAG TI +L GA+ G AFL+R + + + F G ++V ++ LG+K + +++ LT A W++S L+W ++ EGGV+A ++L++PYPR ALREG+LRAQ T +
Sbjct: 9 TFKAESEFRRSLEAALRTGLAAAASIAWAEVGPIRNPLNFFSPVVAIVVTLDTAGGTIAASLGCLHGALSGAFFAFLIRLIADQNCWVAGLLMFIGFFLIVRRRRLNSLGRKIACVTLIVAVLTFEREDVTA----WIMSMLSWYKSVFEGGVWATLALMVPYPRLALREGALRAQYTCK 184
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 0 |
| Seed ortholog | 512565.AMIS_77010 |
| PFAMs | FUSC_2 |
| Model size | 646 |
| Max annot lvl | 201174|Actinobacteria |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Evalue | 3.75e-05 |
| EggNOG OGs | COG4129@1|root,COG4129@2|Bacteria,2GIR7@201174|Actinobacteria,4D95J@85008|Micromonosporales |
| Description | Evidence 4 Homologs of previously reported genes of |
| Cds size | 645 |
| COG category | S |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789154.9321585-CDS-D-mesarthrocarpus_Contig101:17649..17745 | 1680789154.9321585-CDS-D-mesarthrocarpus_Contig101:17649..17745 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig101 17650..17745 + |
| 1680789154.943434-CDS-D-mesarthrocarpus_Contig101:17946..18138 | 1680789154.943434-CDS-D-mesarthrocarpus_Contig101:17946..18138 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig101 17947..18138 + |
| 1680789154.9608343-CDS-D-mesarthrocarpus_Contig101:18359..18478 | 1680789154.9608343-CDS-D-mesarthrocarpus_Contig101:18359..18478 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig101 18360..18478 + |
| 1680789154.9742732-CDS-D-mesarthrocarpus_Contig101:19710..19948 | 1680789154.9742732-CDS-D-mesarthrocarpus_Contig101:19710..19948 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig101 19711..19948 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig101.5.1 >prot_D-mesarthrocarpus_Contig101.5.1 ID=prot_D-mesarthrocarpus_Contig101.5.1|Name=mRNA_D-mesarthrocarpus_Contig101.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=215bp
RKLSPESGPQVPHMAEGDGPPGFPRHGWVRPKKPTFIPRSDFSVKVESGL
RTALAVSLSFIWRTHGPFNGNLAFFAGVVAIVSVGKTAGETIDRNLQLTC
GAILGILSAFLVRWLGSCGRVLGVIAFFFGILVVVSNPWVSPLGKKFGSL
AVVILTLTPGAAATNAFPLEWLLSALTWVRTHVEGGVFALVSLLLPYPRF
ALREGSLRAQVTAR* back to topmRNA from alignment at D-mesarthrocarpus_Contig101:17650..19948+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-mesarthrocarpus_Contig101.5.1 ID=mRNA_D-mesarthrocarpus_Contig101.5.1|Name=mRNA_D-mesarthrocarpus_Contig101.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2299bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig101:17650..19948+ (Discosporangium mesarthrocarpum MT17_79)
AGGAAATTAAGTCCGGAATCGGGACCTCAGGTGCCCCACATGGCAGAAGG
AGATGGGCCACCAGGATTCCCAAGGCATGGATGGGTTCGACCTAAGGTAC
TGGAGGTTGGTCGGAATTAAATGCCGGTGTCGTATTGGATCTGTCCCGGC
TTTGACCTACCCCGTGCATAGGACAAGTAGTACTTTCTCCTTCCCCCTTT
GCACTGTTGTGTCTCATTGGAGGTATCTTGTTGCTTTTTGCTGTCGTCAC
CCTCCGCACATCGTACATCTCGGACAATCCATTCATGTGTCGTGCAGAAG
CCGACCTTCATCCCAAGGAGCGATTTCAGCGTAAAAGTGGAATCCGGGCT
TCGGACAGCCCTGGCTGTGTCGCTTTCGTTCATCTGGCGCACTCACGGCC
CGTTCAACGGCAACCTCGCCTTCTTTGCGGGCGTGGTAGCCATCGTGTCC
GTTGGGAAGACTGCTGGAGAGACGATCGACAGGAATCTGGTGAGCGCTTT
TCCACCTCAGGAGAAGATGTTTTCTTCCCAAGGACCATCACGGACTTCTG
TGCCGCTCAGTTGTGTGCGGCCAGGCCTGGTGGTCCCAACACAGCCATGA
AATAAAGCAGGAGGTGGCCTTTGGTTGCACCAATGCCTATCACGGAGCTT
CTTACCCTTCCCGCCCATGATCCACTGTCTCGCTCTCTCACTGCGCTTAC
CCCATCTCAGCAATTGACCTGTGGTGCCATTTTGGGCATACTGTCCGCGT
TTCTTGTCCGGTGGCTCGGCTCTTGCGGCAGGGTGCTGGGGGTCATAGCA
TTCTTTTTCGGGATTTTGGTGGTGGTGAGGTGAGGCGAGGCCTCGAGTCT
CGAGTCTTTACAGTAGTCAAAAGTATTTAAATGTAAGAGGTGGGTGGGCA
GTTCCTATTTCCAGGCTCTACGAAGGTTCTTTATGCTTGATACAAGAGTC
TCCAGTCTCGACGCGGGGTTCCTTGTGCTCGATTCAAGGATCCATGCTGG
TTTCTCGCTTAATTAGAGTACGGTAGTATGGAGATCATGGAGATATCAAG
GATTTGGAGAGATCTAGCGCTGTCCCATCTCACGTGTTTTCTTCAGAGTA
GAGTATAGAGCCCTACGTGCTTTTACCCTGCTCCAGAGCTCTAGGTACCC
CAGGGCTGCCTCAGGACTAGAGCTCAAGCACCACCACTATGTTGAGCCCC
CTTTCAGCAGTCAGGCCAAGAAGACAGGCACCTTTGCAAGGTCTTTGCCG
ATATCTGATATAGGACTGGCTCTCACGTGCTACTTCAAAGTCTTTCAAGT
GCGTAGGTTTGATGACCCAAGATCCGCTTGTTCTGCGCTGCCGGAGGATG
ACACACGTATGTAGTGTCAAGTAGCTGCATGTAGTGTCAAGTAGCTGTAT
GTAGTGTCCAGTGCCTGTATGTAGTGTCCAGTGCCTGTATGTAGTGTCCA
GTACCTGCATGTAGTGTCCAGTACCTGTATGTAGTGTCCAGTACCTGTAT
GTAGTGTCCAGTACCTGTATGTAGTAGGAAGGACTTTCATTTGAGAACTC
TATTCCAAGCAGCAATGAGTACCAAGTATTATGTAGGGTTCTTCATTGTG
TGTTGTTACATTGTACTCTAACCTTTCATGTGCTCTATTCCTAACCCTAA
CCCTACGTTTCACCGGCTACTTGGAAGTACAGCAGATGTCAGATGCCATG
TCCTTGTCTATGCTCTATTCTGTTTTGGTGTCTTCACTATGGCCTGCAAC
CTCTGACAACTCTGCATGTGTCACACCCCAAGAGCTTGACTTGAGCCTAT
GCTTCCTTGTCCCAACCATAACCCTAACCCTAAAATCAAACTACTCCCAA
AGTAATACTCATAAGTGCTTGAGACTGCCGCGTAGCTTCCCATCTCTACA
GTAAGTGAGAAGTCATTTCTTTCCCTCTTGCCACCGCTTCACGTTCACCA
TGATACTACCCCAACCCTAACCCTAACCCTAATTCTAACCCTAATTCTAA
CCCTAACCCTAACCCTTGTCTCCGTCCTATGCTTCGGCTGGTCCTCACAC
TACCCCTCCAGTAACCCCTGGGTGTCGCCCCTAGGGAAAAAGTTTGGGTC
CCTGGCGGTGGTCATCCTCACCCTGACCCCAGGTGCTGCTGCCACCAACG
CGTTTCCCCTGGAGTGGCTGTTGTCCGCACTAACCTGGGTCCGGACACAC
GTTGAGGGGGGGGTGTTCGCGCTGGTGTCATTGCTGCTGCCCTATCCCCG
CTTTGCCTTGAGGGAGGGGAGCCTGCGTGCACAGGTGACTGCACGCTAA back to topCoding sequence (CDS) from alignment at D-mesarthrocarpus_Contig101:17650..19948+ >mRNA_D-mesarthrocarpus_Contig101.5.1 ID=mRNA_D-mesarthrocarpus_Contig101.5.1|Name=mRNA_D-mesarthrocarpus_Contig101.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=645bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig101:17650..19948+ (Discosporangium mesarthrocarpum MT17_79)
AGGAAATTAAGTCCGGAATCGGGACCTCAGGTGCCCCACATGGCAGAAGG
AGATGGGCCACCAGGATTCCCAAGGCATGGATGGGTTCGACCTAAGAAGC
CGACCTTCATCCCAAGGAGCGATTTCAGCGTAAAAGTGGAATCCGGGCTT
CGGACAGCCCTGGCTGTGTCGCTTTCGTTCATCTGGCGCACTCACGGCCC
GTTCAACGGCAACCTCGCCTTCTTTGCGGGCGTGGTAGCCATCGTGTCCG
TTGGGAAGACTGCTGGAGAGACGATCGACAGGAATCTGCAATTGACCTGT
GGTGCCATTTTGGGCATACTGTCCGCGTTTCTTGTCCGGTGGCTCGGCTC
TTGCGGCAGGGTGCTGGGGGTCATAGCATTCTTTTTCGGGATTTTGGTGG
TGGTGAGTAACCCCTGGGTGTCGCCCCTAGGGAAAAAGTTTGGGTCCCTG
GCGGTGGTCATCCTCACCCTGACCCCAGGTGCTGCTGCCACCAACGCGTT
TCCCCTGGAGTGGCTGTTGTCCGCACTAACCTGGGTCCGGACACACGTTG
AGGGGGGGGTGTTCGCGCTGGTGTCATTGCTGCTGCCCTATCCCCGCTTT
GCCTTGAGGGAGGGGAGCCTGCGTGCACAGGTGACTGCACGCTAA back to top
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