Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10094.1.3 vs. uniprot
Match:
D7G420_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G420_ECTSI)
HSP 1 Score: 76.6 bits (187), Expect = 1.940e-11
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 1
Query: 376 LSRSLDKRMLPRFRHIRNKNIEPSFERHKWVITTYTDQQFTKWLSGQG 519
LSRSLDKRMLPR + +R K+IEP F HKWV++TYTD+QFT+WL G+G
Sbjct: 350 LSRSLDKRMLPRAQQMREKDIEPRFGPHKWVVSTYTDKQFTRWLEGRG 397
BLAST of mRNA_D-mesarthrocarpus_Contig10094.1.3 vs. uniprot
Match:
A0A7J0FB30_9ERIC (GTP binding protein beta 1 n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0FB30_9ERIC)
HSP 1 Score: 61.6 bits (148), Expect = 2.100e-6
Identity = 36/110 (32.73%), Postives = 60/110 (54.55%), Query Frame = 1
Query: 178 LEPKLGWIKSRLEASQEEVRLLILRFPLIFGYSTLKNLDPTVDFFFKELHGTIVEIRKAVLSCPAILSRSLDKRMLPRFRHIRNKNIEPSFERHKWVITTYTDQQF-TKW 504
LE K+ W L S++E + R P IFGYS +NL P +++ E+ I E++ P SL+KR++PR H++ +N+E S +R + ++D++F KW
Sbjct: 535 LEEKI-WFLRGLGLSRDESARVCARLPAIFGYSVKRNLGPKIEYLVSEMKREIEELKVF----PQYFGFSLEKRIVPRHLHLKQRNVEVSLKR----MLMWSDERFYAKW 635
BLAST of mRNA_D-mesarthrocarpus_Contig10094.1.3 vs. uniprot
Match:
A0A834ZIL5_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZIL5_9MAGN)
HSP 1 Score: 59.3 bits (142), Expect = 4.020e-6
Identity = 35/107 (32.71%), Postives = 61/107 (57.01%), Query Frame = 1
Query: 187 KLGWIKSRLEASQEEVRLLILRFPLIFGYSTLKNLDPTVDFFFKELHGTIVEIRKAVLSCPAILSRSLDKRMLPRFRHIRNKNIEPSFERHKWVITTYTDQQF-TKW 504
K+ +++S L S EE + R P IFGYS NL P D+ KE+ ++ ++++ P + SL+KR++PR H++ +N+E +R + ++DQ+F KW
Sbjct: 181 KIRFLES-LGLSYEESARICARLPPIFGYSIENNLRPKFDYLVKEMKRSVEDLKRF----PQYFAFSLEKRIVPRHLHLKERNVEVPLQR----MLLWSDQRFYAKW 278
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10094.1.3 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 1.94e-11 / Id = 68.75 Expect = 2.10e-6 / Id = 32.73 Expect = 4.02e-6 / Id = 32.71 Sequence D7G420_ECTSI A0A7J0FB30_9ERIC A0A834ZIL5_9MAGN back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 0 Seed ortholog 2880.D7G420 PFAMs mTERF Model size 1448 Max annot lvl 2759|Eukaryota KEGG ko ko:K15031,ko:K15032 Hectar predicted targeting category other localisation Exons 4 Evalue 3.19e-12 EggNOG OGs KOG1267@1|root,KOG1267@2759|Eukaryota Description termination of mitochondrial transcription Cds size 1446 COG category S BRITE ko00000,ko03012,ko03029
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789154.491434-CDS-D-mesarthrocarpus_Contig10094:318..466 1680789154.491434-CDS-D-mesarthrocarpus_Contig10094:318..466 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10094 319..466 + 1680789154.5061324-CDS-D-mesarthrocarpus_Contig10094:1126..1182 1680789154.5061324-CDS-D-mesarthrocarpus_Contig10094:1126..1182 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10094 1127..1182 + 1680789154.515179-CDS-D-mesarthrocarpus_Contig10094:2192..2273 1680789154.515179-CDS-D-mesarthrocarpus_Contig10094:2192..2273 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10094 2193..2273 + 1680789154.5259306-CDS-D-mesarthrocarpus_Contig10094:3001..4162 1680789154.5259306-CDS-D-mesarthrocarpus_Contig10094:3001..4162 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10094 3002..4162 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10094.1.3
>prot_D-mesarthrocarpus_Contig10094.1.3 ID=prot_D-mesarthrocarpus_Contig10094.1.3|Name=mRNA_D-mesarthrocarpus_Contig10094.1.3|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=482bp
GAQVPKAHGLPAPCSCHPQDLMAEEHAGPGQARAPEGKTMTPPRICQGEG back to top mRNA from alignment at D-mesarthrocarpus_Contig10094:319..4162+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10094.1.3 ID=mRNA_D-mesarthrocarpus_Contig10094.1.3|Name=mRNA_D-mesarthrocarpus_Contig10094.1.3|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3844bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10094:319..4162+ (Discosporangium mesarthrocarpum MT17_79)GGTGCTCAAGTACCCAAGGCTCATGGCCTACCGGCACCGTGCTCATGTCA
CCCCCAAGACCTCATGGCTGAAGAACACGCTGGGCCTGGACAAGCTCGAG
CTCCGGAAGGCAAGACGATGACCCCACCCAGGATCTGCCAGGGGGAGG GT
AGGGGAGGGGGAGGATGCTGCTGAAGCACCATACGAGGGAAATCTTGTGC
AGGGGCGGGAACTGGGGTCAGGTTGGGAGTCAGGTTTGGGGTTGGGGTTG
GGAAAAACATAACGCACCAAGGGTAGGCAACTGTCATACAAAGCTACACA
AAGAGATCAGTATGCTGTGCAAAGGAGGGGAGGTTTGGTGCCAGGCCTGG
GATTAGGGTTAGGGTTCATGTCCGGGGGGTAACATGGTAAGTATGGGTGG
GTAGCTGTCACACAAGGCCAAGAATCAATCCATTGATATCCTGCCCGGCA
GGGGGGAGTTTTTGAGACTGGCTTGAGGTTTGGGATTAGGGGTTTAGGGT
TGCAAGGGATAGAAAAACAAGGCGCTGATGAAGCACGCTGTGTCTTGTGT
CTGGTCAGGCAGGCCCAGGGGCAGCCACGTGGCTTGTGCGACTGCCACAA
AGAGAACGGCTGTTGACTCCACATAGGTTTTGGAGGAGGCAGCAGGCGGG
TGTGTTCCGTTTTTTCGGGGTTTTTTTCCCAACCCTTTTTTTGTCTCCTC
GATGCACAGTCACCCCCTCCCGTCCTGGATTTTATCATCGGTCAGTAGTG
CGCCCAATCCCTGTCCTTGTCCCTGTCACTGCCCCACAGCTGATCCACAC
CTACCCAGGGATACTGAGCCGCAGCGTTGATGACTGCCTGGAACCGAAGC
TTGGCTGGATTAAG GTGACAAAGCCCGCCGCAGGAGCCACCTGCGTCAGC
ACCAGTGGCGCAGCAGCTCTTTGCTGTTACTATTTCCGTTACTTAATCCT
GCTGCAGCAGTGTGGTTTGTTTTTGTATGCCTTTGTAATGGCACCCAAGA
GCTTTTCCGTGGCCTCTTTCCCTCACTATGTGCATGTACCTTAACTGCAT
TTACTCCCTAGTCCTCCCAGCCCTCTGAAGCATAGGTTAAATTGTGGCTT
TTTGTCATTTGGGATAATATTGGGTATAGTATACAATCAGGAACTCATTG
TTTTGGTGACTCAACTTTTAGGTGCCCATATTGTCTTACCAGTGGTTGAG
GGGTTAACGCCATTGTATAACACCACAATTTTTTCATGATGAAAATCAAT
CTTTGCCTCAAGCAATAATTATTTTTTCGACCCTCCCTCACTTGCCATAG
TGCTGAGGAAAACTGTCGTGAGGTGGTGGCACAGTTAGGGTTAGAGGGTT
TTGGTGTGTGTGTCTCCATCTGTTCCTATCTTTCTGTATAGGCTAGTGCT
ATATAGCCACTGTCTGCCAAAGGGCTTCTTTTTTGCTGGCTCCAGGGATC
AGGAGAAGATGAGGCAATGACCTTTTTCCGCTCCCCTCCGTTCAGTATTT
TTGGTATGTGTTCATGTTCTTGATTAGTTCTTAGTTAAAGTAATTGATTC
TCTCTTTATTTTATTGGTAAGCATTTGTATGTTATGCTGAAATTCTCTTT
TCTATTTTGCCATTATTACAATAATTTCTGTGTTTCCTGTCTACAATAAA
AGAGTCATGCATTGTGGGCGCAAGAGGATGTATCCTCGCATTCCCAATTA
ATATCCCAAGGATAAAGACCAATGGCCAATGACACAACACCAATACCAAT
ATGCAAACACCACCAACAAACGCCATTATTACACACCAACCCCGTAACAC
TTGATACTAACCCTAACCCTAACACCACTGCCTGGCACGGTTGCACGCCC
TCTTTATTCCCTTTCTCCGAGCAGTCCAGGCTCGAGGCATCCCAGGAGGA
AGTACGGCTATTGATCCTACGCTTTCCTCTCATCTTCGGATACAGCACAC
TCAAG GTTCAGACTTAGGGCTCCCTGGGGTTCACTTTCTGGATGTGAAAG
TGGGGGGGGGGGAGGGGGAGGGGGAGGTAATTCTGCTTTGGAGGCAGCAA
GGGAAAACCTGGGTAGAGTTTTTTTTTTTCTCGGTCAGATTAGGATTTTA
TCGGATGGCAGGAGGTGTGACCCTCACGGGTCAGGCAGGGCTTGCTGTGC
TCTCTCTCTCTACTTTGTTTCTCTTGCCTCTTGAGAGAAAAGAGTCAGTA
CAAAAGAGCCAGCGTTTGTCCGTCTCGCGTACACTGCACCTGGAAGTATG
GAAGCATTTGTTAACACACTAGGACCGGTGGGGGGGGGAGGAGGGGTTGT
TGCTGTGCAGGGTGGTGTGCATGTTTTTCCTCAGAGGAGGAAAGCCCGGT
GTGGTGAACTTGCAAAAACCTTCGGAGAGCAGCCTCATGGTGATCCCTCC
AAGAATGAATTTGTGCTTCCCCTGTTCCTTCCCTCCCACGTGAGGTTTTA
CTGACATGCCCCCCTGCCCATCATCCCCCGCCTACCCATCTGCCTTTCCC
GTCCTATCTCCCCCTGTTGTGTTAGTTCTAGCTGGCGCTGAAGCCCCCTG
GTTAAGTTAAACGATGCAGAAGAATCGCCTTCTACCTCTCTCTCCTCCCC
TTTCCCTTGCCCCCCCTCACCTGGTTTCATGGGAATGTCTTACTGCCATG
CCCCCCCCCCCCTCTGCTCCCCTGCCATGGAAGAACCTGGACCCCACCGT
GGACTTCTTCTTCAAGGAGCTCCATGGCACCATCGTGGAGATCCGTAAGG
CGGTGTTGTCGTGCCCCGCCATCCTCAGCCGCAGCCTCGACAAACGCATG
CTCCCCCGCTTCCGCCACATCCGCAACAAGAACATCGAGCCCTCCTTTGA
GCGACACAAGTGGGTGATCACCACCTACACGGACCAGCAGTTCACCAAGT
GGCTCTCGGGGCAGGGGAGGGCCCCGTGGCCAACGCCCCAGACCCCTGTA
GCCCCCGTGGCGGCTGGGGCAGGGGTAGGAGCCCCACCCATGCTGCCTGG
GGCACCCAGAGCCCCTGTTTCCCCTGCAACCACAGGCACCCCGGAGCCTC
CAGTATCGTCAGCTGTGAACCCATCTCCCGTTCACCTCCACACCACCCTC
CCCGGGCCCCTCCCCCCTCCCCCAACCCCACCCCCCCCATTGTTAAATCG
CCACCAGCCCCCAGGTCGCATGACAGTGCCTGGGGTGGCTCCAGCAGTGG
CTCCAGGGGGGAGTGGGGCCGGGGCTGGGGTAGTGGTGATGGCTTCCATG
TCGAACCCTACAGATATCGAAGGTGTTCCTCTACCACCCGCACACCCACA
GGGTCTTGATGGGGTCACAACCTCTGGGTCACTAATGTCAAGCGTGGGGC
AGCCAGAAACAGCGGGTTCAGGGGGAGAAGTGAACGCAGGTTTGACAGGA
CTAGCCGCAAGACATTCAGGGTTGACCGTTGGACAGGAGAAGTTGTCTAT
GGGGCAGACAGAGTCGGCCCCGGGGCAGGCAGGATTGGCTGCCTTAGGGC
AAAAGGGCACAGAAGACAAAGGGTCAGGAAGAGATCAATTTGTGGTAGCC
ACAGGAGGAAGGGGCTCAGAGGGGTCGGCCACTGGGGAGGTAGAGTCAAC
CCCAGGAAAGGCAAATTCAGATGAACCAGAAACATCTGGTACTGAACTGA
GTTTGCCGCGGGCGAAAGGGCCCAGCATACAGGGGCTTGGAGAACCTGGT
GCAAGGGGTGAAAACCAGGCAAAAGCAGCCCCATGGCCAGAAGGAGGGCA
GGATGGAGCTGGGGCAACCACGGGGACGGGAAGCAGGGAACAGGCGACAG
GTGCAACGAAGGATCGGTGGGGGGACACTGCAGAGGCACTCTCA back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10094:319..4162+
>mRNA_D-mesarthrocarpus_Contig10094.1.3 ID=mRNA_D-mesarthrocarpus_Contig10094.1.3|Name=mRNA_D-mesarthrocarpus_Contig10094.1.3|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1446bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10094:319..4162+ (Discosporangium mesarthrocarpum MT17_79) back to top