mRNA_D-mesarthrocarpus_Contig10088.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10088.4.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 3.320e-19 Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 1 Query: 4 YVMPQLQIPVELVGFHLAMLAFLERYKNCIGEIQHAWLVVMCGKLGLTRYLLP 162 Y MPQLQIPVELV HLAMLAFLE+Y+N IGE+QH+WLV +CG+LGLTR++LP Sbjct: 897 YGMPQLQIPVELVILHLAMLAFLEKYQNRIGEMQHSWLVAVCGRLGLTRFVLP 949
BLAST of mRNA_D-mesarthrocarpus_Contig10088.4.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 4.530e-19 Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1 Query: 4 YVMPQLQIPVELVGFHLAMLAFLERYKNCIGEIQHAWLVVMCGKLGLTRYLLP 162 Y MPQLQIPVELV HLAMLAFLE+Y+N IGE+QH WLV +CG+LGLTR++LP Sbjct: 981 YGMPQLQIPVELVILHLAMLAFLEKYQNRIGEMQHTWLVAVCGRLGLTRFVLP 1033
BLAST of mRNA_D-mesarthrocarpus_Contig10088.4.1 vs. uniprot
Match: A0A7S2RW40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW40_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.910e-17 Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1 Query: 4 YVMPQLQIPVELVGFHLAMLAFLERYKNCIGEIQHAWLVVMCGKLGLTRYLLP 162 Y+ PQLQ+PVELV FHL++L FLER+KN IGE+QH WLV + G LGLTRYLLP Sbjct: 746 YIAPQLQVPVELVIFHLSVLGFLERFKNRIGELQHIWLVRVSGALGLTRYLLP 798
BLAST of mRNA_D-mesarthrocarpus_Contig10088.4.1 vs. uniprot
Match: A0A7S2CYG7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CYG7_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.690e-16 Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 1 Query: 4 YVMPQLQIPVELVGFHLAMLAFLERYKNCIGEIQHAWLVVMCGKLGLTRYLLP 162 Y++PQ Q+P+ELV FHL++LAFLER+KN IGE+QHAWLV C LGLT +LLP Sbjct: 568 YLLPQFQVPLELVMFHLSVLAFLERFKNKIGELQHAWLVRACRFLGLTHFLLP 620
BLAST of mRNA_D-mesarthrocarpus_Contig10088.4.1 vs. uniprot
Match: A0A1E7FSP0_9STRA (RING-CH-type domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSP0_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 4.310e-16 Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1 Query: 1 HYVMPQLQIPVELVGFHLAMLAFLERYKNCIGEIQHAWLVVMCGKLGLTRYLLP 162 H + PQLQIP+EL+ FHL+MLA LER+KN IG +QH W+ MC K+GLT Y+LP Sbjct: 760 HILTPQLQIPLELITFHLSMLALLERHKNTIGGLQHRWMKFMCQKMGLTEYILP 813
BLAST of mRNA_D-mesarthrocarpus_Contig10088.4.1 vs. uniprot
Match: A0A448YYL7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYL7_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 5.900e-16 Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1 Query: 1 HYVMPQLQIPVELVGFHLAMLAFLERYKNCIGEIQHAWLVVMCGKLGLTRYLLP 162 H + PQLQIP+EL+ FHL+MLA LER+KN IG +QH W+ MC K+GLT YLLP Sbjct: 888 HLLTPQLQIPLELITFHLSMLALLERHKNNIGGLQHYWMKFMCRKMGLTEYLLP 941
BLAST of mRNA_D-mesarthrocarpus_Contig10088.4.1 vs. uniprot
Match: A0A7S0GAC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAC6_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 7.600e-16 Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1 Query: 1 HYVMPQLQIPVELVGFHLAMLAFLERYKNCIGEIQHAWLVVMCGKLGLTRYLLP 162 H + Q+Q+PVEL+ HL+MLAFLE+YKN IGE+QH WL MC K+GLT Y+LP Sbjct: 112 HILFSQVQVPVELIIVHLSMLAFLEKYKNRIGELQHNWLRFMCSKMGLTEYILP 165
BLAST of mRNA_D-mesarthrocarpus_Contig10088.4.1 vs. uniprot
Match: A0A7S1FWY8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWY8_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 2.050e-15 Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 Query: 4 YVMP-QLQIPVELVGFHLAMLAFLERYKNCIGEIQHAWLVVMCGKLGLTRYLLP 162 Y++P QLQ+PVEL FHL MLAFLE+YKN IGE+QH WLV +CGKLG+ +LP Sbjct: 608 YLLPHQLQVPVELFMFHLCMLAFLEKYKNHIGEMQHYWLVYICGKLGIVESVLP 661
BLAST of mRNA_D-mesarthrocarpus_Contig10088.4.1 vs. uniprot
Match: A0A7S2MEA0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MEA0_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 2.800e-15 Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 1 Query: 10 MPQLQIPVELVGFHLAMLAFLERYKNCIGEIQHAWLVVMCGKLGLTRYLLP 162 +PQLQ+PVEL+ FHL+MLAFLE+YKN IGE+QH WLV +C +GLT ++LP Sbjct: 160 LPQLQVPVELLVFHLSMLAFLEKYKNHIGEMQHYWLVFICRWMGLTDHVLP 210
BLAST of mRNA_D-mesarthrocarpus_Contig10088.4.1 vs. uniprot
Match: W7U493_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U493_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 7.130e-15 Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1 Query: 4 YVMPQLQIPVELVGFHLAMLAFLERYKNCIGEIQHAWLVVMCGKLGLTRYLLP 162 Y+ PQLQIP EL+ FHLAMLAFLE KN IG +Q+ WL C LGLTRYLLP Sbjct: 382 YLAPQLQIPFELIIFHLAMLAFLEHTKNAIGRLQYMWLRPFCKALGLTRYLLP 434 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10088.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10088.4.1 >prot_D-mesarthrocarpus_Contig10088.4.1 ID=prot_D-mesarthrocarpus_Contig10088.4.1|Name=mRNA_D-mesarthrocarpus_Contig10088.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=51bp MPQLQIPVELVGFHLAMLAFLERYKNCIGEIQHAWLVVMCGKLGLTRYLLback to top mRNA from alignment at D-mesarthrocarpus_Contig10088:3079..3446- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10088.4.1 ID=mRNA_D-mesarthrocarpus_Contig10088.4.1|Name=mRNA_D-mesarthrocarpus_Contig10088.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=368bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10088:3079..3446- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10088:3079..3446- >mRNA_D-mesarthrocarpus_Contig10088.4.1 ID=mRNA_D-mesarthrocarpus_Contig10088.4.1|Name=mRNA_D-mesarthrocarpus_Contig10088.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=153bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10088:3079..3446- (Discosporangium mesarthrocarpum MT17_79)back to top |