mRNA_D-mesarthrocarpus_Contig10086.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_D-mesarthrocarpus_Contig10086.1.1
Unique Name	mRNA_D-mesarthrocarpus_Contig10086.1.1
Type	mRNA
Organism	Discosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)

Homology

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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: D8LD77_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD77_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 4.220e-27
Identity = 62/77 (80.52%), Postives = 73/77 (94.81%), Query Frame = 1

Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALKLKQRAMRQGR 231
            MYNKNGRIGIYT++EREAIIARF+RK+ RRVW+KKIRYNCRKNLADKRLR+KGRFVKMS +Q+AALKLKQ+A++  R
Sbjct:  384 MYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQKALKSAR 460

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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A6H5K330_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K330_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.240e-26
Identity = 63/91 (69.23%), Postives = 76/91 (83.52%), Query Frame = 1

Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALKLKQRAMRQGRGHVAEVGVLAEALE 273
            MYNKNGRIGIYT++EREAIIARF+RK+ RRVW+KKIRYNCRKNLADKRLR+KGRFVKMS +Q+ ALKLKQ+ ++  R   A  G  +  +E
Sbjct:  514 MYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRTALKLKQKVLKSARAAAAASGATSMDME 604

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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A835ZBX8_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX8_9STRA)

HSP 1 Score: 110 bits (276), Expect = 5.390e-22
Identity = 59/76 (77.63%), Postives = 67/76 (88.16%), Query Frame = 1

Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALKLKQRAMRQG 228
            +YN+NGRIGIYT +EREAIIARF+ K+ RRVWRKKIRYNCRKNLADKRLRIKGRFVKM+  Q+AAL+L QRA   G
Sbjct:  294 VYNRNGRIGIYTAQEREAIIARFKAKRLRRVWRKKIRYNCRKNLADKRLRIKGRFVKMTPAQRAALQL-QRAAEDG 368

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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A835Z588_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z588_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.370e-21
Identity = 53/68 (77.94%), Postives = 63/68 (92.65%), Query Frame = 1

Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALKL 204
            +YN++GRIGIYT +EREAIIAR+R K+ RRVWRKKIRYNCRKNLADKRLR+KGRFVKM+  Q+AAL+L
Sbjct:  284 VYNRSGRIGIYTLQEREAIIARYRAKRARRVWRKKIRYNCRKNLADKRLRVKGRFVKMTPAQRAALQL 351

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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A7S1Z2T2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2T2_TRICV)

HSP 1 Score: 98.6 bits (244), Expect = 3.910e-19
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1

Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALK 201
            +YNKNGRIGIYT  ER AIIA+F  K+ RRVW KKIRYNCRKNLAD+R+R+KGRFVK S++Q A LK
Sbjct:  225 VYNKNGRIGIYTPAERAAIIAKFNSKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAQLK 291

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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A7S2YJJ2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YJJ2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 7.540e-19
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 1

Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALKLKQRAMRQ 225
            +YN+NGRIGIYT  ER AIIARF +K+ RRVW KKIRY CRKNLAD+RLR+KGRFVK S  +  A +L+ R  ++
Sbjct:   49 VYNRNGRIGIYTPSERAAIIARFNKKRQRRVWNKKIRYGCRKNLADRRLRVKGRFVKRSEQELLAKELQARVEKE 123

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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A6S9FZK2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9FZK2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.340e-18
Identity = 49/71 (69.01%), Postives = 60/71 (84.51%), Query Frame = 1

Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALKLKQR 213
            +YNKNGRIG+YT  ER AIIA+F  K+ RRVW KKIRYNCRKNLAD+R+R+KGRFVK S++Q AAL  +Q+
Sbjct:  291 IYNKNGRIGVYTPAERAAIIAKFNGKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAALAAQQK 361

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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A6U6FD34_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6FD34_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.410e-18
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1

Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALK 201
            +YNKNGRIGIYT  ER AIIA+F  K+ RRVW KKIRYNCRKNLAD+R+R+KGRFVK S++Q A LK
Sbjct:  319 VYNKNGRIGIYTPAERAAIIAKFNSKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAQLK 385

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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A7S2MN31_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MN31_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.330e-18
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 1

Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVKMSSDQKAALK 201
            +YN+NGRIG+YT  ER AIIA+F  K+ RRVW KKIRYNCRKNLAD+R+R+KGRFVK S++Q AA+K
Sbjct:  287 IYNRNGRIGVYTPAERAAIIAKFNGKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAAVK 353

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BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Match: A0A7S4AF00_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AF00_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.700e-17
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 1

Query:    1 MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLRIKGRFVK 171
            +YNKNGRIGIYT  ER AIIARF+ K+ RRVW KKIRYNCRKNLAD+RLR+KGRFVK
Sbjct:  159 VYNKNGRIGIYTPAERAAIIARFQSKRTRRVWNKKIRYNCRKNLADRRLRVKGRFVK 215

The following BLAST results are available for this feature:

BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot

BLAST of mRNA_D-mesarthrocarpus_Contig10086.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
D8LD77_ECTSI	4.220e-27	80.52	CCT domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5K330_9PHAE	2.240e-26	69.23	CCT domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A835ZBX8_9STRA	5.390e-22	77.63	CCT domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A835Z588_9STRA	5.370e-21	77.94	CCT domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S1Z2T2_TRICV	3.910e-19	73.13	Hypothetical protein (Fragment) n=1 Tax=Trieres ch...	[more]
A0A7S2YJJ2_9STRA	7.540e-19	64.00	Hypothetical protein n=1 Tax=Amphiprora paludosa T...	[more]
A0A6S9FZK2_9STRA	1.340e-18	69.01	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]
A0A6U6FD34_9STRA	3.410e-18	73.13	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
A0A7S2MN31_9STRA	5.330e-18	70.15	Hypothetical protein n=1 Tax=Helicotheca tamesis T...	[more]
A0A7S4AF00_9STRA	1.700e-17	80.70	Hypothetical protein n=1 Tax=Pseudo-nitzschia aust...	[more]

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Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-mesarthrocarpus_Contig10086:754..3676+
coding sequence from alignment at D-mesarthrocarpus_Contig10086:754..3676+

protein sequence of mRNA_D-mesarthrocarpus_Contig10086.1.1

>prot_D-mesarthrocarpus_Contig10086.1.1 ID=prot_D-mesarthrocarpus_Contig10086.1.1|Name=mRNA_D-mesarthrocarpus_Contig10086.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=157bp
MYNKNGRIGIYTKEEREAIIARFRRKKCRRVWRKKIRYNCRKNLADKRLR
IKGRFVKMSSDQKAALKLKQRAMRQGRGHVAEVGVLAEALETNDFEDAES
DDYSRSSTSVAAAAAEEEEEEEEEEEEEEEEEEEEEEVEAFPEETYKRTR
RHSIAY*

mRNA from alignment at D-mesarthrocarpus_Contig10086:754..3676+

Legend: CDSpolypeptideUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-mesarthrocarpus_Contig10086.1.1 ID=mRNA_D-mesarthrocarpus_Contig10086.1.1|Name=mRNA_D-mesarthrocarpus_Contig10086.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2923bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10086:754..3676+ (Discosporangium mesarthrocarpum MT17_79)
ATGTACAACAAGAACGGTCGCATTGGCATCTACACAAAGGAAGAGAGGGA
GGCCATAATTGCTCGCTTCCGTCGAAAGAAGTGTCGGAGGGTCTGGAGGA
AGAAAATTAGGTACTTGATGACTGTTGTCTGGAGGAAGAAAATTAGGTAC
TTGATGACTGGTACTTGATGACCGGTACTTGATGACTGTTGTCTGGAGGA
ACAAGATTAGGTACTGTACTGTACGGTACTGTGGGCTAGCTTAATGACTA
TTGTTCCCACAGGACCCATTTTGATATTGCTTTGGTGAATACTTCGCATG
GTGCCCATTGATCATAACATCATTTCCAGAGGCAGGTGCTGTATGGGCTC
GTTAATGGCCACTTGGAGTAGGTTAATCAAGAGGCAGCCATGGATAAGAT
TCTATTCGGGTTCTTAGAATAGGGTTTGAGGAAAAACCACGTGCTGGTGT
TTGCTTCTGTGTTGGATAACATTGTAACTATTGATTAAGGTTGGGGCTAA
GGCTAGAGGTAGGGTTGAGGTTGGGGTTAGATGTACATATGTTGAATATT
GATGTCACGTGAGTAGTCACACCAGCAGGAACACCTGTAACATGAGTGAC
ATATCATGAATCACTTGAGTGGTATTTCTCACATAACTCACTCGCTCATA
TTTCTTGCCTGATTTGTTTGTGCTTAACTTATGTGTACTTGATTTTTGAA
TTTGTCCTAAAGTATTGTATTGTCCTCAAGTAATGCATACAAAGTTTACT
TCTTGATCAACAGTTATGAAATAGTTTATACTTCGTTTTAATATTATTAT
TACTACTAACATTGATTAATGTTTATACTATTATTGCGATTATTTATGGC
TTTTATGTTACAGAGCTAAGTATTATGAAGTGTATTTCTGTGTAATCAAT
CAAGAATTTGATAATTGCTGTATTTGATAATTGAATGTTGATCGATGGGT
ACCAGAATTATGTTATCGATTCAATATTGTGTCTGATATCATTATCATCA
ATTTATACCACTATTATAGTATTGATTGGTTACTGTGTCTGATATCAGTA
GTGGTTATTTATGTCATCATGTTGCACCTCAAGCCATTGGTTATTTTGTT
TATTGATTGACTGATTGTTGGGTGATCAATGTTATTGATTGTTGGGTAAC
CGATACCAGGTACAACTGCCGGAAGAATCTGGCGGACAAGAGGCTGAGGA
TCAAGGGTCGTTTTGTGAAGATGTCCTCAGACCAGAAGGCGGCCCTCAAG
CTCAAGCAGAGAGCCATGAGGCAGGGACGGGGGCAGTCCATCGGAAGGTG
AGGCAATTTTGTCTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCTTT
TCTTTCTGCCCTGCCCTCACCATCACCATCAGCACCGCCAACCTCCTGAT
TCTACCTCAACATGATCATGTTCAACTCCGACCTCATGTGCTTTTTTGTG
TGTGTCCCAGTGTGGCTGAAGTGGGGGTGCTTGCTGAAGCCCTGGAGACA
AACGACTTTGAGGACGCTGAGAGCGATGACTACAGTAGGTCCAGCACCAG
TGTGGCTGCCGCTGCAGCAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGG
AGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTGAGGCCTTCCCA
GAGGAGACATACAAGCGGACAAGGAGGCACAGCATCGCATATTAGCCCTA
CCATCTCTCCTGTGGGCAGGGGGACGGGGTGGGAAGAGGGACAGAGAGAG
GGAAAGGGAGTGGAGGTCTGGGGGTGGGGCCTCTTGGGTGGTCTTATTAA
ACAAGTGCTTCCTGTGATTGAGTGGTGAGATGGTAGGGGTGTGAATGGAC
ACAACTGAGCGGCTGTACCTAGGGCTTTCTTCTTGCTGCTTTTGTCCCTG
TACCCCTACTGCTGTCTGCCCTGGTCCCCATTCTCCACTCCCCGTTCACC
CTTTCTATCCCCCCCCCTCGCTTTCGTTTGCAGTATTGTTCCGTGTAATG
AGCCTAGGGACTCTTCTGTGTGAATTTCTGCGGTTGGCATGTGTTTGCCT
TTCCCTCTGGTTCCCACCCCCCTTGAGGGGTTGGTTGCCAGGAAAAGTAC
GTTGGTTTGGTATTGTGTGATGTGGTTTGGGTGAGCCGGCTTGGGTCGGT
GTTGCCCCTTGTAGGATCCTTGGGGATAGGTGGGTGGCAGAAGAGCTATT
TCTGCAGGGGGGCAGAACGGTGTCTGCATGCGAGAATGAATATAAGAAGA
ATATGAATATGGGAAGAATATGAAAATGGAAAAGAAGTAATAATAGGAGG
AGGAGGCGGGAGAGATTCCTGTTTGGGAGCTCTGTGGGTGTTTTGTGCCC
TCCATGGTGTAGATCGTGTGATATTTTTTCTTTTTTCTTTTGGTCTTGGG
ACGGTAGGGTTATGGAGGGCGCTTTTCTCCATCGTCTTTGTAGTCGTTGT
TGGTGGCGTTGTTGATGGTGTTGTGATTGCTCCTTGTGTTGTTTCGAAAG
TTTAGCGCTTGGATTCAACCTCGGGAGTGTGAGGGTTAAGGCATGCAACC
CAGTCCCAAAACCTGCACCAATGGTAGTGCAGACAACAGGATAGGTTTTT
GGGTGGGGGGTCCTGGCCACCCCCCTCCCACAGCACAGGGTAAGGGGGGG
TCGGGTATAACTCTGTCTCTGCCTGCTCCTGCAGGGGTGTTGGTTTTCTT
CTGTTTTGTCGCACACCCCCAAAAACAAAAATGGCCACCAAACTCACTTA
CATCCCCACACAGTGTATGCTCGCTGATGTGGCCTGTATCCAACCCCCTT
GAGGGGCACGGTTGGGCTATGGAGAAATGAGTTTTACAGGGGGCAGGGTG
CGGAGGGAGGTGGCTGGAGTGTAATGGCATGTGACATCAGTTCGATATTT
CAAGTATAACTGATGTCGTTATA

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10086:754..3676+

>mRNA_D-mesarthrocarpus_Contig10086.1.1 ID=mRNA_D-mesarthrocarpus_Contig10086.1.1|Name=mRNA_D-mesarthrocarpus_Contig10086.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=471bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10086:754..3676+ (Discosporangium mesarthrocarpum MT17_79)
ATGTACAACAAGAACGGTCGCATTGGCATCTACACAAAGGAAGAGAGGGA
GGCCATAATTGCTCGCTTCCGTCGAAAGAAGTGTCGGAGGGTCTGGAGGA
AGAAAATTAGGTACAACTGCCGGAAGAATCTGGCGGACAAGAGGCTGAGG
ATCAAGGGTCGTTTTGTGAAGATGTCCTCAGACCAGAAGGCGGCCCTCAA
GCTCAAGCAGAGAGCCATGAGGCAGGGACGGGGGCATGTGGCTGAAGTGG
GGGTGCTTGCTGAAGCCCTGGAGACAAACGACTTTGAGGACGCTGAGAGC
GATGACTACAGTAGGTCCAGCACCAGTGTGGCTGCCGCTGCAGCAGAGGA
GGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGG
AGGAGGAGGAGGTTGAGGCCTTCCCAGAGGAGACATACAAGCGGACAAGG
AGGCACAGCATCGCATATTAG