mRNA_D-mesarthrocarpus_Contig1008.7.2 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_D-mesarthrocarpus_Contig1008.7.2
Unique Name	mRNA_D-mesarthrocarpus_Contig1008.7.2
Type	mRNA
Organism	Discosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)

Homology

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BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: D7FNU9_ECTSI (RNA binding / nucleic acid binding n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU9_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 1.760e-71
Identity = 147/229 (64.19%), Postives = 159/229 (69.43%), Query Frame = 2

Query:  233 SVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQ-------------PMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPGGQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARKA 880
            S+ SVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPF+EK M+IQFAK+ESDV+TKK GTYV R+KRKLP              P P +  P A              XXXXXXXX           P+   P       VPHNILYAT LPP ITQ+ML KLFEQY GF EARMAPGGQAFIEF D MQAG+ALNAL GF L++T  LQL FARKA
Sbjct:   28 SLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKSESDVVTKKAGTYVPRDKRKLPSADASNGNGLHQAAPAPAATTPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPQPAGPIGD----VPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPGGQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARKA 252

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BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: F0YDU7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU7_AURAN)

HSP 1 Score: 183 bits (465), Expect = 2.480e-50
Identity = 107/217 (49.31%), Postives = 130/217 (59.91%), Query Frame = 2

Query:  233 SVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            S+ SVFSQFGKI+D+V CRGLKL+GQAWVVFA+   ATNALRQMQGFPF++K M+I FAK +SDV++K +G++VAREKRK   P P               APPAT                   AP+    A       P N+L+A DLP     +ML  LF+QY GFKE RM PG  G AF+EF D  QA +AL  L  F LT T  L L FA++
Sbjct:   27 SIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFFDKPMRIAFAKAKSDVVSKADGSFVAREKRKREAPPPK--------------APPATEALE---------------APKPAKAAKADKNATPSNVLFAQDLPDDCNDMMLSILFQQYGGFKEVRMVPGKKGIAFVEFADETQASLALQGLDNFKLTPTDTLALSFAKR 214

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BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A6V1NUL1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUL1_HETAK)

HSP 1 Score: 174 bits (441), Expect = 1.220e-46
Identity = 104/217 (47.93%), Postives = 132/217 (60.83%), Query Frame = 2

Query:  233 SVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            S+ S+FSQFGKI++IVACRGLKL+GQAWV FA+ + ATNALRQMQGFPFYEK M+I FAK +SD + K+ G Y   +KR+  +            + +A +    T          +   +  PV      PA+     VPH IL+A +LP    ++ML  LF+QY+G+KE RM PG  G AFIEF D MQAG AL  L GF LT    LQL +ARK
Sbjct:   29 SLHSIFSQFGKIIEIVACRGLKLRGQAWVCFADTAAATNALRQMQGFPFYEKPMRIAFAKNKSDKVLKREGVYDPAKKRRKMEXXXXXXXXXXXXESVAAMEQEPTPAAVVQPAFTAVQQVEQPV------PAN-----VPHRILFAQNLPDDCNEMMLDMLFQQYNGYKEVRMVPGKKGLAFIEFGDEMQAGYALQGLNGFKLTPQDLLQLSYARK 234

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BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A7S2DHN7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHN7_9STRA)

HSP 1 Score: 173 bits (438), Expect = 3.470e-46
Identity = 103/224 (45.98%), Postives = 132/224 (58.93%), Query Frame = 2

Query:  212 KTRSTHTSVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            K +    ++ SVFSQFGKIV+IVACRGLKL+GQAW+ F     AT+A+ +MQGFPFY+K MKI F+KT+SD + K++GT+VAREKRK  +  P +E  P      A      T                    P+ +  AD      P +IL+A +LP     +ML  LF+ Y+GFKE RM PG  G AFIEF D + AG AL  L GF LT TQ L L FA++
Sbjct:   35 KKQPLRKALYSVFSQFGKIVEIVACRGLKLRGQAWICFETVEAATHAMAKMQGFPFYDKPMKIAFSKTKSDCVAKRDGTFVAREKRKREEKAPRAESEPTAMDTSASKISTPT--------------------PQILQAADLNAT--PSSILFAQNLPEDCNDMMLSMLFKTYAGFKEVRMVPGKKGLAFIEFTDEVSAGSALQGLHGFKLTPTQTLALSFAKR 236

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BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A7S2UV81_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV81_9STRA)

HSP 1 Score: 169 bits (428), Expect = 3.720e-45
Identity = 97/217 (44.70%), Postives = 127/217 (58.53%), Query Frame = 2

Query:  233 SVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            S+ S+FSQFGKI+ I ACRG+KL+GQAWVVF +K+ ATNALRQMQGFPFYEK M+I F+KT+SDV+ K++GTY  R+++  P P P +   P+        A                       A +  P         P+ IL+A  LP    +++L  LF+QY GF E RM PG  G AF+EF+D MQAG A+  L GF LT    L L +A +
Sbjct:   22 SLHSIFSQFGKIIQITACRGIKLRGQAWVVFQDKASATNALRQMQGFPFYEKPMRIAFSKTKSDVVAKRDGTYTKRKRKAPPAPAPDAPAQPSAPFAQTTAA-----------------------AGKNNP---------PNRILFAEGLPDDCNEMVLGMLFKQYIGFSEVRMVPGKSGIAFVEFEDEMQAGYAMTGLNGFKLTPNDTLSLSYAMR 206

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BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A7S3NJ60_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ60_9STRA)

HSP 1 Score: 169 bits (427), Expect = 7.410e-45
Identity = 98/214 (45.79%), Postives = 131/214 (61.21%), Query Frame = 2

Query:  242 SVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            S+FSQFGKI+D+V CRG++L+GQAW+ FA+   AT+A+++MQGFPFY+K M+I FAK++SD+I K +GT+V+REKRK        E PPA     A  AP                    P  P  + P        P N+L+A +LP    Q ML  LF+QY+G+KE RM PG  G AFIEF D +QA +AL  L GF+L+ T  L L FA++
Sbjct:   35 SLFSQFGKILDLVCCRGIRLRGQAWICFADIGAATSAMQKMQGFPFYDKPMRIAFAKSKSDIIAKADGTFVSREKRKR-------ESPPAANTDAAHQAPQKKQL---------------PTPPTNLTP--------PSNVLFAQNLPDECNQNMLVILFQQYTGYKEVRMVPGKKGIAFIEFADDVQASLALAGLNGFSLSPTHALNLSFAKR 218

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BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A812Y221_SYMMI (Snrpb2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y221_SYMMI)

HSP 1 Score: 167 bits (422), Expect = 3.910e-44
Identity = 93/214 (43.46%), Postives = 133/214 (62.15%), Query Frame = 2

Query:  242 SVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            ++FSQ+GK+++IVAC+G++L+GQAW+V+ + S ATNA+R++QGF FY+K ++I FAKT+SD++ KK+GT+  R+KR   +         +  +  A  APP                  PPVA    P  +     VPH IL+A +LP      ML  LF+QY GF+E RMAPG  G AFIEFQD +QAG+AL  L GF L++   LQL + ++
Sbjct:   29 ALFSQYGKVIEIVACKGIRLRGQAWIVYQDTSSATNAMRRLQGFNFYDKPLRISFAKTKSDIVAKKDGTFNPRQKRVREEQS-------SAMEDGARAAPPPAQYKE------------PPVAKTPKPIVNN----VPHRILFAQNLPDECNDQMLAALFQQYPGFQEVRMAPGKKGIAFIEFQDVVQAGIALQQLSGFQLSAADTLQLTYGKQ 219

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BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A8J2X4I1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4I1_9STRA)

HSP 1 Score: 166 bits (420), Expect = 6.860e-44
Identity = 100/217 (46.08%), Postives = 127/217 (58.53%), Query Frame = 2

Query:  233 SVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPG--GQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            S+ SVFSQFGKI+D+V CRGLKL+GQAWVVFA+   ATNALRQMQGFPFY+K M+I FAK++SD+I K++GT+  REKRK   P P +   PA  + +                  +PG   PP                       ++LP   + +ML  LF+QY+GFKE RM PG  G AF+EF D  QA +A   L GF LT T  L L FA++
Sbjct:   27 SIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFYDKPMRIAFAKSKSDMIAKRDGTFKPREKRKREDPKPAA---PAAAKALP-----------------APGDAPPPKVXXXX-------XXXXXXXXXXSNLPEDCSDMMLGILFQQYAGFKEVRMVPGNKGIAFVEFADETQASLARQGLDGFKLTPTDALSLVFAKR 216

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BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A0S3S4Y7_PHAAN (Uncharacterized protein n=2 Tax=Phaseoleae TaxID=163735 RepID=A0A0S3S4Y7_PHAAN)

HSP 1 Score: 167 bits (422), Expect = 1.400e-43
Identity = 111/245 (45.31%), Postives = 146/245 (59.59%), Query Frame = 2

Query:  149 PSLRYYWRIPSLAASMLVPRRKTRSTHTSVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVAPPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARM--APGGQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            P LR+ W I SL   ML    K      S+ +VF+QFGKI++++A + LK KGQAWVVF E S A+NALRQMQGFPFY+K M+IQ+AKT+SDVI K +GT+V REKRK      G +      Q  A +A    +         +P    P  A   VP A  P    P+NIL+  +LP   T +MLQ LF QY GFKE RM  A  G AF+E+ D MQ+ VA+ +L+GF +T    + + +A+K
Sbjct:   32 PQLRFRWIIRSLNCRMLDVELKK-----SLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPREKRKRHDDK-GKK---RKDQHDANLAGMGLNPAYSGAYGATPTIPYPGGAKSMVPEAPAP----PNNILFIQNLPNESTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQSLQGFKITPQNPMLITYAKK 263

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BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Match: A0A176VE80_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VE80_MARPO)

HSP 1 Score: 165 bits (417), Expect = 3.580e-43
Identity = 110/230 (47.83%), Postives = 143/230 (62.17%), Query Frame = 2

Query:  212 KTRSTHTSVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGSEPPPAVRQRIAEVA------PPATSXXXXXXXXLSPGGLLPPVAPETVPPADTPGVIVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARM--APGGQAFIEFQDAMQAGVALNALKGFNLTSTQQLQLDFARK 877
            K      S+ +VFSQFGKI+DIVAC+ LKL+GQAWVVF + + ATNALRQMQGFPFY+K M+IQ+AK++SD ++K +GT+V+REKRK            A R+R    A      PPA++ XXXXXXX                    P    P+NIL+A +LP     +M++ LF+Q+ GFKE RM  A  G AFIEF D MQA VAL AL  F +T T  +Q+ +A+K
Sbjct:   21 KKEELKKSLYAVFSQFGKILDIVACKTLKLRGQAWVVFDDVTAATNALRQMQGFPFYDKPMRIQYAKSKSDAVSKADGTFVSREKRKKNDEK-------AERKRREHQAEAPAAGPPASAYXXXXXXXXXXXXXXXXXXXXXXXXXXXP----PNNILFAQNLPREANNLMIEMLFQQFPGFKEVRMIEAKPGIAFIEFGDEMQASVALQALHNFKITPTNPMQISYAKK 239

The following BLAST results are available for this feature:

BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot

BLAST of mRNA_D-mesarthrocarpus_Contig1008.7.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7FNU9_ECTSI	1.760e-71	64.19	RNA binding / nucleic acid binding n=2 Tax=Ectocar...	[more]
F0YDU7_AURAN	2.480e-50	49.31	Uncharacterized protein n=1 Tax=Aureococcus anopha...	[more]
A0A6V1NUL1_HETAK	1.220e-46	47.93	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S2DHN7_9STRA	3.470e-46	45.98	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S2UV81_9STRA	3.720e-45	44.70	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S3NJ60_9STRA	7.410e-45	45.79	Hypothetical protein n=1 Tax=Aureoumbra lagunensis...	[more]
A0A812Y221_SYMMI	3.910e-44	43.46	Snrpb2 protein n=1 Tax=Symbiodinium microadriaticu...	[more]
A0A8J2X4I1_9STRA	6.860e-44	46.08	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
A0A0S3S4Y7_PHAAN	1.400e-43	45.31	Uncharacterized protein n=2 Tax=Phaseoleae TaxID=1...	[more]
A0A176VE80_MARPO	3.580e-43	47.83	Uncharacterized protein n=2 Tax=Marchantia polymor...	[more]

Pages

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	2880.D7FNU9
Preferred name	SNRPB2
PFAMs	RRM_1
Model size	1959
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11091,ko:K11094
KEGG Pathway	ko03040,map03040
KEGG Module	M00351,M00352
Hectar predicted targeting category	mitochondrion
GOs	GO:0000003,GO:0000245,GO:0000354,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0001650,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0005686,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007530,GO:0007538,GO:0007539,GO:0007542,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0017069,GO:0018992,GO:0018993,GO:0019099,GO:0019219,GO:0019222,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030237,GO:0030532,GO:0030619,GO:0030620,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034401,GO:0034622,GO:0034641,GO:0035613,GO:0035614,GO:0036002,GO:0040029,GO:0042802,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044703,GO:0044877,GO:0045292,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048024,GO:0048468,GO:0048477,GO:0048519,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070828,GO:0070868,GO:0070990,GO:0071004,GO:0071005,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097157,GO:0097158,GO:0097159,GO:0097525,GO:0097549,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1902679,GO:1903311,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons	7
Evalue	8.02e-77
EggNOG OGs	KOG4206@1\|root,KOG4206@2759\|Eukaryota
Ec32 ortholog description	Nucleotide-binding alpha-beta plait domain
Ec32 ortholog	Ec-12_003280.1
Description	snRNA stem-loop binding
Cds size	837
COG category	J
BRITE	ko00000,ko00001,ko00002,ko03041

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_D-mesarthrocarpus_Contig1008.7.2	prot_D-mesarthrocarpus_Contig1008.7.2	Discosporangium mesarthrocarpum MT17_79	polypeptide	D-mesarthrocarpus_Contig1008 14495..20306 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789153.6228483-UTR-D-mesarthrocarpus_Contig1008:14448..14494	1680789153.6228483-UTR-D-mesarthrocarpus_Contig1008:14448..14494	Discosporangium mesarthrocarpum MT17_79	UTR	D-mesarthrocarpus_Contig1008 14449..14494 +
1680789153.7326443-UTR-D-mesarthrocarpus_Contig1008:20306..21382	1680789153.7326443-UTR-D-mesarthrocarpus_Contig1008:20306..21382	Discosporangium mesarthrocarpum MT17_79	UTR	D-mesarthrocarpus_Contig1008 20307..21382 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789153.6405563-CDS-D-mesarthrocarpus_Contig1008:14494..14691	1680789153.6405563-CDS-D-mesarthrocarpus_Contig1008:14494..14691	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig1008 14495..14691 +
1680789153.6520395-CDS-D-mesarthrocarpus_Contig1008:16647..16714	1680789153.6520395-CDS-D-mesarthrocarpus_Contig1008:16647..16714	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig1008 16648..16714 +
1680789153.6625504-CDS-D-mesarthrocarpus_Contig1008:18311..18413	1680789153.6625504-CDS-D-mesarthrocarpus_Contig1008:18311..18413	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig1008 18312..18413 +
1680789153.6780818-CDS-D-mesarthrocarpus_Contig1008:18740..18978	1680789153.6780818-CDS-D-mesarthrocarpus_Contig1008:18740..18978	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig1008 18741..18978 +
1680789153.694092-CDS-D-mesarthrocarpus_Contig1008:19280..19375	1680789153.694092-CDS-D-mesarthrocarpus_Contig1008:19280..19375	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig1008 19281..19375 +
1680789153.7112818-CDS-D-mesarthrocarpus_Contig1008:19814..19868	1680789153.7112818-CDS-D-mesarthrocarpus_Contig1008:19814..19868	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig1008 19815..19868 +
1680789153.7241976-CDS-D-mesarthrocarpus_Contig1008:20222..20306	1680789153.7241976-CDS-D-mesarthrocarpus_Contig1008:20222..20306	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig1008 20223..20306 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-mesarthrocarpus_Contig1008:14449..21382+
coding sequence from alignment at D-mesarthrocarpus_Contig1008:14449..21382+

protein sequence of mRNA_D-mesarthrocarpus_Contig1008.7.2

>prot_D-mesarthrocarpus_Contig1008.7.2 ID=prot_D-mesarthrocarpus_Contig1008.7.2|Name=mRNA_D-mesarthrocarpus_Contig1008.7.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=279bp
MGVMGSRSARPSRIYRFSAENCVLFGVGRGHRGTPSLRYYWRIPSLAASM
LVPRRKTRSTHTSVCSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMAT
NALRQMQGFPFYEKNMKIQFAKTESDVITKKNGTYVAREKRKLPQPMPGS
EPPPAVRQRIAEVAPPATSVAPPAMSVLSPGGLLPPVAPETVPPADTPGV
IVPHNILYATDLPPGITQIMLQKLFEQYSGFKEARMAPGGQAFIEFQDAM
QAGVALNALKGFNLTSTQQLQLDFARKA*

mRNA from alignment at D-mesarthrocarpus_Contig1008:14449..21382+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-mesarthrocarpus_Contig1008.7.2 ID=mRNA_D-mesarthrocarpus_Contig1008.7.2|Name=mRNA_D-mesarthrocarpus_Contig1008.7.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=6934bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1008:14449..21382+ (Discosporangium mesarthrocarpum MT17_79)
GTTGGCCTAACCGGTCGATGGAGAATGTCGTTTTGATATCCTTGCGATGG
GTGTAATGGGGTCCAGATCCGCAAGACCATCGCGGATTTATCGATTTTCG
GCGGAGAATTGTGTCCTTTTCGGAGTCGGTCGAGGACATCGTGGCACCCC
CTCTCTCCGATATTACTGGCGCATACCCTCTCTTGCTGCTTCAATGTTGG
TTCCCCGACGAAAGACCAGATCGACTCACACGTCGGTTTGCAGGTATTGA
AACAAGGCTACCTGGTGGCCCGCATTTTCTTGCCGTAGCTTGAGGCTGTA
AAGCTACCGCCTTACTTTTGCAAAAGGGATTTTGTGGGATGCAAGCATCA
ATGCTGGCTTGGGCCGATGTTGTGCCAATATTTCCTTGGTAGCCTCGAGA
GTTTCTGTGCTGGTGAATTTTTTTTTTTTTTCCCCACTTCTCGCAGCGTA
CTAGTGTGACCCTGTTTCTTGAGTACCTCATGTGATTCTGACTTTGGCTC
ACTACCCTTCTTGTGGGTCAACTCTCTCATTTAACTGTGGGTACTGGGGA
TGCAAACTGATCTCGTTTCTTTCTCTCATCTTACTGTGAAACCAAACTTG
GTAAACTCCTACAAAGGAAGAGGAGGCTCGGTGCAGGAAAGTGCGAGGAG
GAACTCGAACAAAAACACGTAGTGGTTCCTGCCGAATAATTGTGTGTCGC
AGCTCTTGGCATGTTATATTTGTCGTTGCTTGATGTAGTAGAGCTGGTGT
GTCTTGCTTGATACACAATGAGATGAACCGCAGTACTGTTGGTATCATAT
GCGCAAGTCGCACCATGTTCGCTGAACTTCAGGGCCCCTCCTGTAGAACT
GATGTTTTTTTCACCTGCAGAAAAAACAAAGCAACTTGGGGGGGGGGGGG
GAATCATGACCATTTTGTGTTTTTGGCTCGGTGAAAAAGCAAAATTCGGA
AAACGAGTGCTACGATTGCTTCTGAACTTCTTAAACAAGCATAGGTGCAA
GTTCACAAAAAAGAAAAAAAGAATAATTTTTTTTCCCTGGGCTGACCAAG
GCTTAGCTATCGATGAAGCAAAGTTGCATGTGCTTGCTTGTCGCACGCCG
CGTGTACCCCAAGATAATATCGTGGTTGAGAACGCAGGTTCTGCTCTGTC
TTCATTTTAATGGATTCGAAGGAAAAAATTGAGAGAGAAGCAGGATGAAA
TTAGGCGATGTTCGGTGCCATAGTCACAAGGCCGGATGTGCAAATGGTAT
CTATACAAAACCAGTGATTCTTGAAACTCCAGGGTCAGGGGTTGATGCTG
ATGCTGATGTTGAAGAGGTGGATTTGTTTTCTGTTTTATCTGGTTGAGAA
GGGGCTCATGGCTGCCCGTGCCAAGCTTGAAGTTGTGTTTGAAAGTCATT
TCTCAACAGTAAGTGCTACCAAAGGTATCCACTTTCCAACAAAATGCTAT
CAGCTTAACCTTCCCCTTATCTTTTTCTTTCCCCAGCCCTGTTATTGTGC
CATAACTCCACAAGATCTGAACATGAGGTGCAGCATAATGCCCTGTAACA
TGTCCCATCCAGAAAACCGCACTGTTGAAGACTATTCCTACCCTTGGGTG
TAGCTCTAACCTTAACCATAATAGATTACATTGAGCTGATGTTCCAGCTG
AGCTTGACCCATCTACGCCAACCTTCCTGAAATGACACAGCAGAGTATTG
GTCAGATACAGTTGAGATCAAAATCAGGACGGGCCAGGGTCATAGGCGAT
ATCAGCCAGGGACATGTACAGTAGAGCTTTACCCCTTTACCCCTCTACCA
CTGATTGACACTTTGGTATAGTGCTGTAGTGCTCTACCAGCAGCACCACA
GTTACAGAGGTCTCTGACTGGCATGTTTGGTGATTGCAAGTTCGTGATCT
ATTATATATTATCCTGACCAATAGAAGTCATTATTTTAACCAAGAGAGGC
CTTGGAGGCATTGGGGGTAAAGGGCCTAAGAAAGACCGCACTTTACAGCT
CAAACTTGTGCTCAAGAGCTATGCATCAAAAATCCTTATCAAGGTTTTGT
AAGAGTAACAAAGTGCGCTCATTTGTTGTTTTGCGGTACGTTATTCCAAA
GGAAAATGAGTGCTCCAGTAGTTGCCATCACATAGATCATAACTCACTCT
TTACCATTCCCTGCCCTTTTCATGTACTCATTACCTGGGTAATCAACAGT
GTATTCAGTCAGTTCGGCAAGATCGTTGACATCGTCGCATGCAGGGGGCT
CAAGCTGAAGGGGCAGGTATGCGGGGAGAACAAATGGGGGGAGCTGGTGT
GTCAATGGGGTCAGAATTGATGTTTTTTGTAGCCGTAGGAAGGACCGTCG
TGCCGTTTTCTCAGGCGAAACGACGGATGGCCAATGAGTCATGAGGATGA
AGATGCTCAACCATGCAGCTGTGTCCAATGCTTCCGAGAAGCACTTCAAA
CTATCTGGTACAAGAGAGTACCTCAGCAGTTATGTCTTCCCTGTTCAGAT
GTTGGTGCTGGGATTGTGCTGGAGATGTGATAGGCTGGGTCTCGTGAAAA
CTGGGTCCTGTGGTTGAATACTGCTTGACTCTCACAGTGAGTTGACTTTT
TGTAAAACTGAGGACTTCCTGTGCTTGGACAAATAGACGTGGACACACAT
GATCGGGGATGCTCTTGGTTTTCCTTTGGGCGTGGATCTCTTTGTAGGGG
TGCGGGGAGCAGCAGTGGTAGAAGAACTACTGAGAGCTACAGCACAATGG
TATATAGTGAGCTCGAAGACACTTTGTCTCAAATGCGCAAGGGGAATCAT
CGATGGGAAAAAGTCAAGATAATTTTTTCAGGTAACGCAAATCACTCAAG
TTCTGATGCAGGACAGGGTATGATAACCACAGGTTGTGAACCATAATCTT
CAGTTTGTTTAACGTACTCCGAAGCTGGAAATGCCTCTATGATTAGGGAT
TCGCCACCTCACCCAATCCAACTTGATCTAGAGTTTTTGACGTCCAAGCC
ATGCACACCTGAGACTGGGTCTCTGATTGACCGCTGTTGATACTGGTACC
ATGTTGTGATGTTGTAGTCTTGGTTGCTCTGCAACCAAAGATATTAAGTC
CCATGCTTCGAGTTGCCGCTGAATTTGGTCATTAGTTTTGCGCTGCCTTG
GACGCTGCGGCAAAAGTGTCTTTCTTGTATTTCCTTTTGTTTTTGTTGTA
TTTTTTTTTACTGTACGTAAGAATGGGGCGTTGTTTTGTCCAAAGGATCA
GGGCTTAGGGGTACGGGTTTGAGTTACAGAGTTACAGTGACACGGTTCAA
CCATATTCCACTCAACTTCTCCCGACCTCCACCTCACCACGTGGATGGTT
TGCAAGAATGAAGCTGGACTTCATATTTGCTTTACAAACATGTCGACACG
TGTTGTCTTGGGGCGATGGTGAAGGGGTTAACACATTTCGCTTGCACCGA
AAAGGTCGGGGGTTCAAATCCCCCTCGCTCCATTTTTGTGGTTCTCTATG
TTTGGTATCTTGTAAGTAGGTATGCCTGGGGTATGTATGGGTAACTCTGG
GTGACTTTTTTTTTCACACGAATTCTCGTCCCCATAATAATTATTTAATG
CATACTGTGAGCTCTACTGCAGTTCTACGGTTTTTATATGTGCCCCTTTT
TTTGTCTGGATTGCCCTCGATTTTTAAGTGTTAAGTTTTCGACCATTGAG
ATATCACTCACCACCCACCACCCACCTGGCTCCCTTTGCACAGTAGGAAA
CTCCTAACTTCCGCACTCGGAATTAGAGGTCTGTGGTGTATTTTTTCCCA
AAAGATGCCATATCAACCGATACGTTCATTACGCCATATCTCGGTTCCCT
CTATGTTCAACAGGCATGGGTAGTGTTTGCGGAGAAAAGCATGGCAACAA
ATGCCCTTCGCCAGATGCAGGGCTTCCCTTTTTACGAGAAGAACATGAAG
ATACAGTTCGCGAAGGTGCGTGAAACCTCCAACGTCGACCGGAACAGACA
TTTTCAAGGAACAAGACAGGTTGTAACAGTGGCATTGTCCAGTGATAATA
TTTGGTGATAGTAGTAGATGGGGGTGTGACATAATTAAATACACCTGCTC
ATTTGTCTTGTTGGCTGGTTCCTCTGGCATGTTTGTGGATATATACATGA
AACGCTCACATATCCATGGAACGAAGGTGGGTACTCTGATACAGGTGTGC
TTTCATTACCACAAAAAAAAACGTTTTTTGCAGAGTAGAATATGGCAACC
AACAGCGTGCGCACGACCTTCTCGCCCCTCCTCTTATCTTAGACTGAAAG
CGATGTCATCACAAAAAAGAACGGGACCTACGTTGCGCGGGAGAAGCGGA
AGCTTCCCCAGCCTATGCCAGGGTCGGAACCACCCCCGGCTGTTCGCCAG
AGGATAGCCGAAGTAGCGCCTCCAGCGACTTCAGTTGCACCCCCAGCAAT
GAGTGTTCTCTCGCCAGGGGGGCTTCTGCCTCCTGTTGCACCAGAAACAG
TGCCGCCAGCTGACACCCCTGGAGTCATTGGTGAGTTACCATATTCCCGT
GAATTTTCTTGTTTTGGGGGGGGGCGGAGGTGGGTAAAATTTTCCTCATG
GCTGTGAAAAATTCATGCTTATTGAGTGCGTAATTTGCAGCAGGGTCCTT
TACACATTAGGTAGATTGACAGGTGTTGTCAGCGGTATTCCTGCCAGCAT
GCAACTAAATTCATCACGCCCGCACCTATTCCCCACCTGTTCCTGTGCAA
TACCGAACTGATGCTGTGCTTCATCTACCGGTACTGAGATAATGCCTCTG
ATCTCATCTCTGCTCCCTCCCCACTCGATCAGTTCCCCACAACATCCTGT
ACGCGACGGATCTCCCTCCAGGGATCACACAGATCATGCTCCAGAAGCTG
TTTGAGCAATACAGCGGCTTCAAGGAGGTACAATGCAAAACCCAAAGTAT
TGCAGAGGGGGCGGGTACCTAATCTCTCTGAAAAAATCTTACGTGTAAGG
GCCCCGGCAACCTTGTGCCCACCAGGTTATTGTTTCTTTTTCTCGGGTGG
GCTAGGCTTAGGGTTTTAGCTTGGGTGCACACATCACAGTTCAGTACTCC
GCTTGTGTGGAAGAACGTGACTTGTCGTGTAGATGTTCCTCGAATGTTAC
AGCTACAGGCTTGCTGTGGTGGGGAGCAGTGGACGTCTTGAGCACGGGGG
TCTCTTATCAGTCTTCAGGCTTGTAGTATTTCTTTGCCGATTAGTTATCG
AAAAGACTTAAGATCAAGCCCATCGCTGTAACGGTACCGACATATTTAAT
TTCCGCAGTGAAAAACATCCTTGTCACCATGTGATAATCTTCTCTTACCC
ACCATTTAACTGGCAGGCGAGGATGGCACCTGGGGGTCAGGCGTTCATTG
AATTCCAGGACGCCATGCAGGTACGGAAACGATTTTCGCAAAACCTTTCA
GCAGTATTCATTTTTTGGCAAGCCACGTAAAAAATGTAGATGTGGAGTAT
GTGATTTACTGTGTTTACGTACTGCAGTTGGGAGTACCAAGTATTATAGT
ATGCTGTTTGTTCAACCGTTCTCTCTGGGCGTGTTTATCTTTATCTTGTG
AACACCGAGCGGTGTGGTTGGCATCAGGGATTGCTTGAACAAGCAATATA
AACGACAAATTAGGCGCAACGTACTTCGAAGTTTGAAATACCTTGGAACA
AGGATCATTTGGCTGGCAAGGTGTTAAAAAGGCAACCCCCCTGTCCACTC
TGCAACCCATGAACGCGGATCCAGGCGGGAGTTGCACTGAACGCACTCAA
GGGATTCAACCTCACCTCAACCCAACAGCTGCAATTAGATTTCGCAAGGA
AGGCCTGAGGAAGTGGTTCGGTCCGCGACGAGGGAGCTGACGAGGTATTG
GCTCGTTCACAAGACACAGGGAGTAGACGAAATGTTGGTGGGAAGGCCTT
CCCTCTTCGAAAATGTGTGGCATCAAGGGGGGGTGGGGGAGCGTTGTAGT
CCGGATACAGGATGGAGTGCTGTGTGCCGCTGGGAACTCCTGTCTGGCTG
GGTTTTGGCCCTCTGCATGGACCACGATGGCCATTGCTGAAGGAAGCCCT
GCAATCATGAATACATTCACCGTGAGCTGTCGACTTCCTAGACTGACTGG
TACAAACCACAGTTTTGCATTTTCGTGGTCTTTCTCTGTTCTCGGTCTGT
CTCCAGCAAGTTAGTTGCTGGTGGTATGACTCAGCCCCCTTTTTGTCTTG
TTTGTTTGGTTCTCCTTTGCCTCCTACCGTTGTACTTGATTGCTTCTCCA
GTTACGTGCTATTGCTTGGGTTTGGGAGATATTGAAGTAGGCGCCACGTT
AAACACCATGTGTGTTGGTGAGTGACAGCTATGTGGTGCGTCATGCAACA
CGATTACTGAACGCTGCTGCCTGTCACAGAGCAAGGAGGGTAAACGAGTG
GGGCGCGAAAATGCATTGCAGGAAGAGCGAAGTGGAGGGAGATTCTGGAG
GGAGGCTGCATGATTTGATAAATGTGTCGCGATGTCACTACGTTGTAGTT
TGCTAGCTGGTGGCCAGAGAGTCTATTGTTGAAGAGTCACTCCAACGAAC
GGGCAAACTTGTGCGTAGGAAGACAGGAAATTAGTAAACAAAAAGTACCA
CAAGGCAATTATTGTAGTAAGAGAAGGCGCATGTCATACAAGTACAAGCA
ACGGCCTATACTCTACCTTTCAACTTTGCCCAATAGCTCTATTATACAAT
AATTGCTCGAAGGAAGGACTAGTCGGATGTGAACAGCAAAAATAGCTATT
AGAAGTCTGCCCTGTGTCCTGACCAAGGACGTCACTCACTCTTGATTTTA
TGTATTTCGACGAACTATATATTTGTATGCTTCGAAGTATGAAACAGAGA
AAGAAGTATCTCTTCTGACTGACGAAAGACCACG

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1008:14449..21382+

>mRNA_D-mesarthrocarpus_Contig1008.7.2 ID=mRNA_D-mesarthrocarpus_Contig1008.7.2|Name=mRNA_D-mesarthrocarpus_Contig1008.7.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=837bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1008:14449..21382+ (Discosporangium mesarthrocarpum MT17_79)
ATGGGTGTAATGGGGTCCAGATCCGCAAGACCATCGCGGATTTATCGATT
TTCGGCGGAGAATTGTGTCCTTTTCGGAGTCGGTCGAGGACATCGTGGCA
CCCCCTCTCTCCGATATTACTGGCGCATACCCTCTCTTGCTGCTTCAATG
TTGGTTCCCCGACGAAAGACCAGATCGACTCACACGTCGGTTTGCAGTGT
ATTCAGTCAGTTCGGCAAGATCGTTGACATCGTCGCATGCAGGGGGCTCA
AGCTGAAGGGGCAGGCATGGGTAGTGTTTGCGGAGAAAAGCATGGCAACA
AATGCCCTTCGCCAGATGCAGGGCTTCCCTTTTTACGAGAAGAACATGAA
GATACAGTTCGCGAAGACTGAAAGCGATGTCATCACAAAAAAGAACGGGA
CCTACGTTGCGCGGGAGAAGCGGAAGCTTCCCCAGCCTATGCCAGGGTCG
GAACCACCCCCGGCTGTTCGCCAGAGGATAGCCGAAGTAGCGCCTCCAGC
GACTTCAGTTGCACCCCCAGCAATGAGTGTTCTCTCGCCAGGGGGGCTTC
TGCCTCCTGTTGCACCAGAAACAGTGCCGCCAGCTGACACCCCTGGAGTC
ATTGTTCCCCACAACATCCTGTACGCGACGGATCTCCCTCCAGGGATCAC
ACAGATCATGCTCCAGAAGCTGTTTGAGCAATACAGCGGCTTCAAGGAGG
CGAGGATGGCACCTGGGGGTCAGGCGTTCATTGAATTCCAGGACGCCATG
CAGGCGGGAGTTGCACTGAACGCACTCAAGGGATTCAACCTCACCTCAAC
CCAACAGCTGCAATTAGATTTCGCAAGGAAGGCCTGA