mRNA_D-mesarthrocarpus_Contig10075.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_D-mesarthrocarpus_Contig10075.2.1
Unique Name	mRNA_D-mesarthrocarpus_Contig10075.2.1
Type	mRNA
Organism	Discosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)

Homology

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BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Match: D8LBJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ4_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.230e-27
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 3

Query:   15 MGLTSMLVGTGFGLAAKGAMNEIRRIPLRREPWEYLITGGVGMWLGANIPHWEKQLLSDINEMRADRNMPPVKRQGGLIMGSSIVEVK 278
            MG+T+M VG  FG+ AKG +N + ++ LRR PWEY++  G+G ++G  IP WE  L+SDINEMRADRNMPP  R GG   GSSI + K
Sbjct:    1 MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPATRVGGYEFGSSITDSK 88

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BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Match: A0A7S3Y6B8_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6B8_HETAK)

HSP 1 Score: 84.3 bits (207), Expect = 2.410e-16
Identity = 33/81 (40.74%), Postives = 54/81 (66.67%), Query Frame = 3

Query:    6 VESMGLTSMLVGTGFGLAAKGAMNEIRRIPLRREPWEYLITGGVGMWLGANIPHWEKQLLSDINEMRADRNMPPVKRQGGL 248
            +E+MG+ S+  GT  G+  K   N +R++ LRREPWEYL+ GG+GM+ G+  P W++ ++  IN + A+R +PP+   G +
Sbjct:   18 IENMGVFSVAFGTALGIGVKAYSNCLRKVALRREPWEYLVLGGLGMYAGSKYPAWQEDMVKKINVLHAERGLPPLDSVGQI 98

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BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Match: A0A7S2V622_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V622_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.710e-16
Identity = 31/77 (40.26%), Postives = 51/77 (66.23%), Query Frame = 3

Query:   45 GFGLAAKGAMNEIRRIPLRREPWEYLITGGVGMWLGANIPHWEKQLLSDINEMRADRNMPPVKRQGGLIMGSSIVEV 275
            G+G+A K   N + ++PLRREPWEYL+ G +G ++G  +P W++ L+ +INEM  +R +PP+   G   +GS   ++
Sbjct:   16 GWGVALKAMTNSVMKVPLRREPWEYLMFGALGAYVGYKMPEWQQNLIDNINEMHEERGLPPLDVDGQFSLGSKFKQL 92

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BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Match: A0A835ZFJ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFJ2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 9.700e-15
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 3

Query:   15 MGLTSMLVGTGFGLAAKGAMNEIRRIPLRREPWEYLITGGVGMWLGANIPHWEKQLLSDINEMRADRNMPPVKRQGGLIM 254
            MGL   L G   GL  K   N +R++PLRR+PWEY++    G  L   IP WEK L   +N  RA RN+PP+ R+G   M
Sbjct:    1 MGLLYTLGGGAAGLGLKWWTNSVRKVPLRRDPWEYVLYAAAGAALFRQIPIWEKNLTEQVNTKRAARNLPPINREGATTM 80

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BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Match: A0A6H5JVS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS4_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.740e-13
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 3

Query:  108 PWEYLITGGVGMWLGANIPHWEKQLLSDINEMRADRNMPPVKRQGGLIMGSSIVEVK 278
            PWEY++  GVG ++G  IP WE  L+SDINEMRADRNMPP  R GG   GSSI + K
Sbjct:  591 PWEYVLGAGVGAYIGNKIPQWEATLISDINEMRADRNMPPATRVGGYEFGSSITDSK 647

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BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Match: W7U3Y1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3Y1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.050e-9
Identity = 36/89 (40.45%), Postives = 48/89 (53.93%), Query Frame = 3

Query:   15 MGLTSMLVGTGFGLAAKGAMNEIRRIPLRREPWEYLITGGVGMWLGANIPHWEKQLLSDINEMRADRNMPPVKRQGGLIMGSSIVEVKE 281
            M L + LVG  FG+  K A N +R+IPLRREPW+Y I   VG W+G      E+ L   +NE RA  +  PV       +G  +  +KE
Sbjct:    1 MTLGTGLVGASFGIFVKLASNSMRKIPLRREPWDYPIFMLVGAWVGYKYVALEESLRERVNEKRAILDKEPVH------LGGVLTTIKE 83

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BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Match: A0A7R9ZF43_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZF43_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.740e-9
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 3

Query:   12 SMGLTSMLVGTGFGLAAKGAMNEIRRIPLRREPWEYLITGGVGMWLGANIPHWEKQLLSDINEMRADRNMPPV 230
            +MGLT+MLVG   G +     N  R++PL R PW ++    VGM+ G      E +LL+DINE+RAD+ +PP+
Sbjct:   27 TMGLTAMLVGGVSGTSMHLLANAARKVPLSRSPWFHVAYFFVGMYAGQKYVTVEAKLLNDINELRADKGLPPM 99

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BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Match: K0R0Q8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0Q8_THAOC)

HSP 1 Score: 60.1 bits (144), Expect = 6.920e-7
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 3

Query:    9 ESMGLTSMLVGTGFGLAAKGAMNEIRRIPLRREPWEYLITGGVGMWLGANIPHWEKQLLSDINEMRADRNMPPV 230
              MGLT+  VG   G       N I+++PL R PW ++    +G ++G      EK+L+ DINE+RAD+ MPP+
Sbjct:  134 SGMGLTAFFVGAFSGTGMHMMSNAIQKVPLSRRPWMHVGCFFLGGYVGQRWVRLEKELVLDINEIRADKGMPPM 207

The following BLAST results are available for this feature:

BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot

BLAST of mRNA_D-mesarthrocarpus_Contig10075.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D8LBJ4_ECTSI	1.230e-27	55.68	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S3Y6B8_HETAK	2.410e-16	40.74	Hypothetical protein (Fragment) n=2 Tax=Heterosigm...	[more]
A0A7S2V622_9STRA	8.710e-16	40.26	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A835ZFJ2_9STRA	9.700e-15	45.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6H5JVS4_9PHAE	3.740e-13	61.40	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
W7U3Y1_9STRA	2.050e-9	40.45	Uncharacterized protein n=2 Tax=Monodopsidaceae Ta...	[more]
A0A7R9ZF43_9STRA	2.740e-9	43.84	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]
K0R0Q8_THAOC	6.920e-7	39.19	Uncharacterized protein n=1 Tax=Thalassiosira ocea...	[more]

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-mesarthrocarpus_Contig10075:1523..3235-
coding sequence from alignment at D-mesarthrocarpus_Contig10075:1523..3235-

protein sequence of mRNA_D-mesarthrocarpus_Contig10075.2.1

>prot_D-mesarthrocarpus_Contig10075.2.1 ID=prot_D-mesarthrocarpus_Contig10075.2.1|Name=mRNA_D-mesarthrocarpus_Contig10075.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=91bp
MGLTSMLVGTGFGLAAKGAMNEIRRIPLRREPWEYLITGGVGMWLGANIP
HWEKQLLSDINEMRADRNMPPVKRQGGLIMGSSIVEVKET*

mRNA from alignment at D-mesarthrocarpus_Contig10075:1523..3235-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-mesarthrocarpus_Contig10075.2.1 ID=mRNA_D-mesarthrocarpus_Contig10075.2.1|Name=mRNA_D-mesarthrocarpus_Contig10075.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1713bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10075:1523..3235- (Discosporangium mesarthrocarpum MT17_79)
GGAAGGTGGAAAGTATGGGTCTCACAAGCATGCTTGTCGGGACTGGGTTT
GGACTCGCCGCCAAGGGAGCCATGAACGAGATCAGGAGGATCCCCCTCCG
TAGAGGTGAGTTGTGAGGATAAATTGTCAGGATGAAAGTGATGGTTGACA
GCTGTCCCTTTGAGCTGAGTCGTATGTTTTCCCCTCCCCAAGTTTGACAC
TTTTTCTCAAAGTTGCCAGGCCAGATTATTCGTGGAGAGGTGGGAAACGT
TTCTATTTGAGATGAATTCGATATCATATTTCTTCCCTTAAGTCCTGACT
CGACAGCCCCTCTCAGGGGGGGGTCAGACTGTCCTTAATTTGTGTCGGTT
TCGGCATCTTCATTTAGTTTGGCACCAATTACCAAATGTGAGTCATGCTT
TTGGAGAAGTCGGGAAAGACACTCGTCGTTAACTCAACAATCCTCAGATA
ATCCATATCGAGATACTCAGGGAGGAGCTTTGCCTATAAGAAAACAGTTG
TCGACGCGTAAAGTGCCTTTATTGCAACCAAATGCCGAGTAAGAACCTCG
AGGTCCGATTCATTTGCTTTTGTAACAGCAGAGAATTTGCTCTTTAGGGT
CAAATCCCTTTGCCTCAATATTGGCCAATCTTCTTCAGAGATGGAGATAG
ATATTCAGCCCAGGAGGAGTACCATTGCTTAGACCAAACTACTGCAGTAA
AGTTGCCCCACACAAATAAAAATGTCCTCATCTTTGCCTGCCTCCTTCTC
TTTCCTCGGTCCATCAAAGAGCCCTGGGAATACCTTATCACAGGAGGAGT
GGGGATGTGGCTTGGGGCAAACATACCCCACTGGGAAAAGCAATTGCTGT
CAGACATCAACGAGATGCGTGCCGACCGCAACATGCCCCCTGTGAAGCGA
CAGGGTGGTTTGATAATGGGCTCAAGCATTGTTGAAGTGAAGGAAACATG
AATTTTCGCAAGGCAATGAGAGAGGGGCTCGAGGGGAGCGGGGGAGGAAG
TGAGAATATCGTCAGGTAGAGTATGATAGGTCACGCCACTGTTTTACCCG
GACATTCAGGTCTCTGTTGGAAGGATAAATATTTTGTGTGTTCCAGTTGA
GGGCTGGCACTGTGTCAAGCAAATTTCTAGCAGGCACAGCTCTTACATGG
GACAGAGATTTCCCTGTTTCTCCTTGCGCATCTACAGCTCCTTATGAGGG
TTTTTAGGTATATTGAGGCGGTCTGCCTGTTGCAACCGTCTTGGAGTCTT
GTAGAATTGCTTGCCACGTCTTGCTCTCTGAAACTAACTTGAGAGATCAA
GTACACAAGTACAAAAGTGTGAGAATAAGATTGGAATTTCAGCTTGCTGT
CACATTTTGTTGTGCCAACGAGTCTTACAATTGTGACCCACGTGACTTGA
AACCTAAAAATCCAACGGTGCAGATGGCATCCCATACTGCCACCTTAATG
ACTGCCGAAAGCATGGAATATCCTACAGAAGTACTATTTTGTCTTGCCTT
TTGCGTAACAGAATGACTGCACACAGAAATGGAGTTTCTTGGGAACGATC
TGTAGTAACCAAGAAATGAGCTCTGGTAAGGAAGTTTCTTGTCCAGAACG
CAAGCACAGCTGCTCAGCTGCTGGCTAGGCTGCACCCTGCTCTGTGTTCA
TGTGGCCAGGGAGGATTTTGATTTGTTTATTTATTTTTGAGTGAATCAAG
TCATACGAACATA

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10075:1523..3235-

>mRNA_D-mesarthrocarpus_Contig10075.2.1 ID=mRNA_D-mesarthrocarpus_Contig10075.2.1|Name=mRNA_D-mesarthrocarpus_Contig10075.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=273bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10075:1523..3235- (Discosporangium mesarthrocarpum MT17_79)
ATGGGTCTCACAAGCATGCTTGTCGGGACTGGGTTTGGACTCGCCGCCAA
GGGAGCCATGAACGAGATCAGGAGGATCCCCCTCCGTAGAGAGCCCTGGG
AATACCTTATCACAGGAGGAGTGGGGATGTGGCTTGGGGCAAACATACCC
CACTGGGAAAAGCAATTGCTGTCAGACATCAACGAGATGCGTGCCGACCG
CAACATGCCCCCTGTGAAGCGACAGGGTGGTTTGATAATGGGCTCAAGCA
TTGTTGAAGTGAAGGAAACATGA