mRNA_D-mesarthrocarpus_Contig10070.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: A0A7S0IFV4_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IFV4_MICPS) HSP 1 Score: 71.6 bits (174), Expect = 6.270e-13 Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 1 Query: 4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMAVL 198 + +QV + +F HR++DV T+R + A+GRWM P FL D ++YLGWSL+DK S+VR+A L Sbjct: 285 MIRQVFEKIFTHRFRDVDPTIRAACIKALGRWMHDHPLLFLSDYFLKYLGWSLNDKDSSVRLAAL 349
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: A0A8J5KE34_ZINOF (SCD domain-containing protein n=4 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KE34_ZINOF) HSP 1 Score: 70.1 bits (170), Expect = 2.180e-12 Identity = 28/63 (44.44%), Postives = 44/63 (69.84%), Query Frame = 1 Query: 4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMA 192 + +++ G+F HRY+DV +R +S++G W+L+ P FLQD ++YLGW+L+DKS VR A Sbjct: 279 MMRKLFKGLFMHRYRDVDPEIRMSCISSLGNWILLYPSLFLQDLYLKYLGWTLNDKSPGVRKA 341
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: A0A397JIC3_9GLOM (SCD domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397JIC3_9GLOM) HSP 1 Score: 69.7 bits (169), Expect = 3.000e-12 Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 1 Query: 1 SLTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMAVLQV 204 S + DGVF HRY+DV +R E + +G W++ P FL D +RYLGW LSDKS VR+ L+V Sbjct: 377 SYFDDLFDGVFVHRYRDVEPIIRSECIKELGVWIIRHPDRFLGDTIIRYLGWQLSDKSPIVRLESLKV 444
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: A0A4U5LQV9_STECR (SCD domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5LQV9_STECR) HSP 1 Score: 69.3 bits (168), Expect = 4.080e-12 Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 1 Query: 4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMAVLQVNLP 213 + Q V VF HRY+D+ +R ++ +G W+ + P+AFL+D+ ++Y+GW L DK+S+VRM L +P Sbjct: 341 MIQYVFKSVFVHRYRDIVPEIRSVSIEELGHWIYLFPEAFLEDSYLKYIGWMLYDKNSDVRMKCLGALIP 410
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: A0A811LFD0_9BILA (Hypothetical protein n=1 Tax=Bursaphelenchus okinawaensis TaxID=465554 RepID=A0A811LFD0_9BILA) HSP 1 Score: 68.9 bits (167), Expect = 5.560e-12 Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1 Query: 4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMAVLQVNLP 213 + Q V VF HRY+D+ S VR +S +G+WML+ P+ FL D+ ++Y+GW L DK+S VR + +P Sbjct: 275 MIQYVFKHVFAHRYRDIISDVRCVCISELGKWMLVYPQLFLDDSYLKYVGWLLYDKNSEVRQRCINCLIP 344
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: UPI00053F2D46 (sister-chromatid cohesion protein 3 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F2D46) HSP 1 Score: 68.9 bits (167), Expect = 5.570e-12 Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 1 Query: 4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMA 192 + ++ G+F HRY+D+ S +R + ++G W+L P FLQD ++YLGW+L+DKS+ VR A Sbjct: 275 MMDKIFKGLFMHRYRDIDSNIRVSCIQSLGVWILSYPSLFLQDRYLKYLGWTLNDKSAGVRKA 337
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: A0A5C7I211_9ROSI (SCD domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7I211_9ROSI) HSP 1 Score: 68.9 bits (167), Expect = 5.580e-12 Identity = 27/65 (41.54%), Postives = 45/65 (69.23%), Query Frame = 1 Query: 4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMAVL 198 + +++ G+F HRY+D+ T+R + ++G W+L P FLQD ++YLGW+L+DKS+ VR A + Sbjct: 274 MMRKIFTGLFVHRYRDIDPTIRMSCIKSLGVWILSYPSFFLQDLYLKYLGWTLNDKSAGVRKAAV 338
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: A0A068U4X5_COFCA (SCD domain-containing protein n=4 Tax=Coffea TaxID=13442 RepID=A0A068U4X5_COFCA) HSP 1 Score: 68.6 bits (166), Expect = 7.620e-12 Identity = 27/63 (42.86%), Postives = 44/63 (69.84%), Query Frame = 1 Query: 4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMA 192 + +++ G+F HRY+D+ +R + ++G W+L+ P FLQD ++YLGW+L+DKSS VR A Sbjct: 285 MMRKLFTGLFVHRYRDIDPEIRMSCIQSLGVWILLYPSLFLQDLYLKYLGWTLNDKSSGVRKA 347
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: A0A830CXN2_9LAMI (Sister-chromatid cohesion protein 3 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CXN2_9LAMI) HSP 1 Score: 68.6 bits (166), Expect = 7.670e-12 Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 1 Query: 4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMA 192 + +++ G+F HRY+D+ +R + ++G W+L P FLQD ++YLGW+L+DKSS VR A Sbjct: 4 MMRKIFQGLFVHRYRDIDQDIRMSCIESLGVWVLSYPSLFLQDLYLKYLGWTLNDKSSGVRKA 66
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Match: UPI00053C1DBB (sister-chromatid cohesion protein 3 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C1DBB) HSP 1 Score: 68.2 bits (165), Expect = 1.040e-11 Identity = 27/65 (41.54%), Postives = 45/65 (69.23%), Query Frame = 1 Query: 4 LTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLGWSLSDKSSNVRMAVL 198 + +++ G+F HRY+D+ ++R + ++G W+L P FLQD ++YLGW+L+DKS+ VR A L Sbjct: 276 MMRKIFTGLFVHRYRDIDPSIRMSCIQSLGIWILSYPSLFLQDLYLKYLGWTLNDKSAGVRKASL 340 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10070.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10070.1.1 >prot_D-mesarthrocarpus_Contig10070.1.1 ID=prot_D-mesarthrocarpus_Contig10070.1.1|Name=mRNA_D-mesarthrocarpus_Contig10070.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=71bp SLTQQVLDGVFKHRYKDVSSTVREEALSAMGRWMLILPKAFLQDATVRYLback to top mRNA from alignment at D-mesarthrocarpus_Contig10070:3687..4363+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10070.1.1 ID=mRNA_D-mesarthrocarpus_Contig10070.1.1|Name=mRNA_D-mesarthrocarpus_Contig10070.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=677bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10070:3687..4363+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10070:3687..4363+ >mRNA_D-mesarthrocarpus_Contig10070.1.1 ID=mRNA_D-mesarthrocarpus_Contig10070.1.1|Name=mRNA_D-mesarthrocarpus_Contig10070.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=213bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10070:3687..4363+ (Discosporangium mesarthrocarpum MT17_79)back to top |