mRNA_D-mesarthrocarpus_Contig10057.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: D7FZ37_ECTSI (Solute:Sodium symporter family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ37_ECTSI) HSP 1 Score: 164 bits (414), Expect = 2.640e-46 Identity = 82/110 (74.55%), Postives = 95/110 (86.36%), Query Frame = 1 Query: 10 GGDSLSDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQVG 339 GGD SD LL IVR S+IPVTL+A IVAS YN+TGYLL+VAFDIVLAGCIAPLFAAIY K VTPGGALA +LFGSILR +LEFALPKDGLL IP+G+++F++G G+VG Sbjct: 250 GGDRFSDVKLLTIVRVSIIPVTLIACIVASTYNETGYLLIVAFDIVLAGCIAPLFAAIYFKKSVTPGGALAAVLFGSILRAILEFALPKDGLLAIPHGEFNFDYGPGEVG 359
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: A0A6H5KJW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW0_9PHAE) HSP 1 Score: 163 bits (413), Expect = 5.830e-45 Identity = 82/110 (74.55%), Postives = 95/110 (86.36%), Query Frame = 1 Query: 10 GGDSLSDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQVG 339 GGD SD LL IVR S+IPVTL+A IVAS YN+TGYLL+VAFDIVLAGCIAPLFAAIY K VTPGGALA +LFGSILR +LEFALPKDGLL IP+G+++F++G G+VG Sbjct: 449 GGDRFSDIKLLTIVRVSIIPVTLIACIVASTYNETGYLLIVAFDIVLAGCIAPLFAAIYFKKSVTPGGALAAVLFGSILRAILEFALPKDGLLAIPHGEFNFDYGPGEVG 558
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: D8LH33_ECTSI (Solute:Sodium symporter family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH33_ECTSI) HSP 1 Score: 153 bits (386), Expect = 3.570e-44 Identity = 77/109 (70.64%), Postives = 91/109 (83.49%), Query Frame = 1 Query: 10 GGDSLSDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQV 336 GGD SD LL IVR S+IPVTL+A IVAS YN+TGYLL+VAFDIVLAGCIAPLFAAIY K VTPG A A +LFGSI R +LEFALPKDGLL IP+G+++F++G G++ Sbjct: 96 GGDRFSDVKLLTIVRVSIIPVTLIACIVASTYNETGYLLIVAFDIVLAGCIAPLFAAIYFKKSVTPGDAPAPVLFGSIFRAILEFALPKDGLLAIPHGEFNFHYGPGEM 204
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: A0A835YRZ9_9STRA (Solute:Sodium symporter family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ9_9STRA) HSP 1 Score: 127 bits (319), Expect = 8.700e-32 Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 1 Query: 22 LSDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQVGNPFF 351 +++ LL IVR S+ VT++AAIVA++YN+TGYLLVVAFDI LAG IAPL A +Y N VTPGG + G+L G + R +LE+ALPKDG L++P G+Y++ +G GQ G P F Sbjct: 470 ITEPMLLIIVRVSVPIVTIIAAIVAAEYNRTGYLLVVAFDIALAGSIAPLLALVYTPNSVTPGGGVCGLLAGILTRVILEYALPKDGSLILPAGNYAYGYGPGQAGLPLF 579
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: A0A836C8K4_9STRA (Solute:Sodium symporter family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K4_9STRA) HSP 1 Score: 122 bits (305), Expect = 2.890e-30 Identity = 63/116 (54.31%), Postives = 81/116 (69.83%), Query Frame = 1 Query: 4 LRGGDSLSDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQVGNPFF 351 LR G ++ LL +VR + VT++AAIVAS +N TGYLLVVAFDI LAG IAPL A+IY VTPGG + G+L G + R +LE+ LPKDG L++P G Y++ +G GQ G P F Sbjct: 267 LRPGTVITQDMLLRVVRTCVPMVTIIAAIVASTHNNTGYLLVVAFDIALAGSIAPLLASIYTPKRVTPGGGVCGLLAGILTRVILEYTLPKDGSLMLPAGSYAYGYGPGQAGLPLF 382
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: A0A835Z361_9STRA (Solute:Sodium symporter family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z361_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.270e-24 Identity = 51/97 (52.58%), Postives = 69/97 (71.13%), Query Frame = 1 Query: 64 IPVTL-VAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQVGNPFF 351 +PV + + A++A+ YN+TGYLLVVAFDI L+ IAPL A ++A N +TP G + +L G R +LEFALPKDG V+PYG Y++ +G GQ G P F Sbjct: 258 VPVVITIGALIAAAYNETGYLLVVAFDIALSSTIAPLLAIVHAPNRITPSGGVVALLGGMSTRVILEFALPKDGSFVLPYGQYAYGYGEGQAGLPSF 354
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: A0A8J6CCI3_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCI3_DIALT) HSP 1 Score: 99.0 bits (245), Expect = 9.390e-22 Identity = 57/105 (54.29%), Postives = 75/105 (71.43%), Query Frame = 1 Query: 22 LSDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPY-GDYSFNFGSGQ 333 +S+K LL + R + +PVT A +VAS QTGYLLVVAFDI+LAG I PLFAA Y K+ +P GAL ++ GS LR +LEFALPKDG L++P+ GD ++G+ Sbjct: 492 ISEKNLLWVARVAALPVTAAACLVASFTFQTGYLLVVAFDIMLAGTIVPLFAAFYTKSP-SPLGALCCVIGGSGLRVLLEFALPKDGFLILPWPGDEFLDYGAAS 595
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: A0A383W3V0_TETOB (Uncharacterized protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383W3V0_TETOB) HSP 1 Score: 94.4 bits (233), Expect = 3.940e-20 Identity = 55/109 (50.46%), Postives = 69/109 (63.30%), Query Frame = 1 Query: 25 SDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQVGNPFF 351 +D LL +VR IP+T +A +VA+ GYLLVVAFD+VLAGC PL AA+Y +V TP +A + GS LR +LEF LPKDG LV +G Y+ FG G P F Sbjct: 474 TDANLLRVVRIFAIPMTGLACLVAALAYNPGYLLVVAFDVVLAGCFVPLLAAVYWPSV-TPNAGIASCVAGSTLRILLEFLLPKDGSLVA-FGQYALQFGKAVAGLPAF 580
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: A0A7J7Q160_9CHLO (Sodium:solute symporter family-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q160_9CHLO) HSP 1 Score: 93.6 bits (231), Expect = 7.330e-20 Identity = 55/109 (50.46%), Postives = 69/109 (63.30%), Query Frame = 1 Query: 25 SDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQVGNPFF 351 +DK LL IVR +P+T +A +VA GYLLVVAFD+VLAGC PL AAIY ++ TP + + GS LR +LEF LPKDG LV +G Y+ +FG G P F Sbjct: 475 TDKNLLLIVRIFTVPMTALACMVAVLAYDPGYLLVVAFDVVLAGCFVPLMAAIYWPSM-TPNAGIISCVCGSTLRILLEFLLPKDGSLVA-FGQYALHFGKAIAGLPTF 581
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Match: A0A2K3E5B1_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3E5B1_CHLRE) HSP 1 Score: 93.6 bits (231), Expect = 7.350e-20 Identity = 56/109 (51.38%), Postives = 69/109 (63.30%), Query Frame = 1 Query: 25 SDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLAGCIAPLFAAIYAKNVVTPGGALAGILFGSILRTVLEFALPKDGLLVIPYGDYSFNFGSGQVGNPFF 351 S++ LL + R +P+TL A +A+ YLLVVAFDIVLAGC+ PL AA+Y +P L L GSILR +LEF LPKDG LVI G Y+F +GSG G P F Sbjct: 476 SEENLLWVARIFHVPMTLTACFIAAWAYNPAYLLVVAFDIVLAGCLVPLLAAVYYPRG-SPNAGLLSCLGGSILRLILEFTLPKDGSLVIA-GKYAFLYGSGLPGLPSF 582 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10057.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10057.1.1 >prot_D-mesarthrocarpus_Contig10057.1.1 ID=prot_D-mesarthrocarpus_Contig10057.1.1|Name=mRNA_D-mesarthrocarpus_Contig10057.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=117bp VLRGGDSLSDKTLLAIVRFSMIPVTLVAAIVASQYNQTGYLLVVAFDIVLback to top mRNA from alignment at D-mesarthrocarpus_Contig10057:356..1453+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10057.1.1 ID=mRNA_D-mesarthrocarpus_Contig10057.1.1|Name=mRNA_D-mesarthrocarpus_Contig10057.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1098bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10057:356..1453+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10057:356..1453+ >mRNA_D-mesarthrocarpus_Contig10057.1.1 ID=mRNA_D-mesarthrocarpus_Contig10057.1.1|Name=mRNA_D-mesarthrocarpus_Contig10057.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=351bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10057:356..1453+ (Discosporangium mesarthrocarpum MT17_79)back to top |