mRNA_D-mesarthrocarpus_Contig10040.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_D-mesarthrocarpus_Contig10040.1.1
Unique Name	mRNA_D-mesarthrocarpus_Contig10040.1.1
Type	mRNA
Organism	Discosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)

Homology

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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: D7FHQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHQ0_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.930e-48
Identity = 84/106 (79.25%), Postives = 91/106 (85.85%), Query Frame = 1

Query:    1 QHEQDGRVLGSKVKNDDWTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIENNVPSDMKYVKPKAGKSLLAKVAAKS-SVSGKSRG 315
            Q E D RVLGSK+K DDWTFE+DMVFEHAMAEFEETD+LRWLKVASLLPGK+ EDVRHRYQRL YDVH+IEN VP D+KY  PK GKSLLAKVAAKS S S + RG
Sbjct:   83 QMEPDARVLGSKIKRDDWTFEQDMVFEHAMAEFEETDSLRWLKVASLLPGKSHEDVRHRYQRLVYDVHKIENAVPMDVKYKAPKGGKSLLAKVAAKSGSASSRGRG 188

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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A6H5K4R8_9PHAE (Myb-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R8_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 3.750e-45
Identity = 83/103 (80.58%), Postives = 89/103 (86.41%), Query Frame = 1

Query:    7 EQDGRVLGSKVKNDDWTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIENNVPSDMKYVKPKAGKSLLAKVAAKSSVSGKSRG 315
            E D RVLGSK+K DDWTFE+DMVFEHAMAEFEETD+LRWLKVASLLPGK+ EDVRHRYQRL YDVH+IEN VP D+KY  PK GKSLLAKVAAKS  S  SRG
Sbjct:   50 EPDARVLGSKIKRDDWTFEQDMVFEHAMAEFEETDSLRWLKVASLLPGKSHEDVRHRYQRLVYDVHKIENAVPMDVKYKAPKGGKSLLAKVAAKSG-SASSRG 151

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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A836CHK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHK7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.560e-15
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 1

Query:   37 VKNDDWTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIENNVPSDMKY-VKPKAGKSL 267
            + + +WTFEE+ VFE+ ++ F+E D  RW K+ASLLP K+ EDVR RYQ+L YDV RIE  +   ++Y VK + G+SL
Sbjct:   74 IDDGNWTFEEETVFENGLSTFDEDDLERWNKIASLLPEKSPEDVRRRYQKLMYDVTRIEAGMQVSLEYKVKARLGQSL 151

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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A7S4D6G4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6G4_HETAK)

HSP 1 Score: 65.9 bits (159), Expect = 5.430e-10
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1

Query:   52 WTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIE 213
            WT EED++FEH +A F E D  RW K+  LLP K ++ +R RYQ+L +DV RIE
Sbjct:   65 WTKEEDVMFEHGVATFNEGDEERWAKIQKLLPSKTEDQIRKRYQKLLFDVSRIE 118

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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A5D6XTB4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTB4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.570e-7
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 1

Query:   52 WTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIENNVPSD 231
            WTFEED +FE+A+A++       W K+A+ LPGK  +D R+RY++L  DV  IE +   D
Sbjct:  225 WTFEEDKIFENALAKWSSDKPYSWPKIATALPGKTAKDARNRYEKLVGDVAIIETSGGDD 284

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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A834GHP1_RHOSS (Uncharacterized protein n=2 Tax=Rhododendron TaxID=4346 RepID=A0A834GHP1_RHOSS)

HSP 1 Score: 56.6 bits (135), Expect = 6.080e-7
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1

Query:   31 SKVKNDDWTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIEN 216
            S  ++  WT  ED  FEHA+  F +  + RW ++A LLPGK+QE+VR  Y+ L  DV  I++
Sbjct:   25 SATQSSTWTRPEDKAFEHALVVFPDGTSDRWRRIAELLPGKSQEEVRAHYEALVDDVFEIDS 86

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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A835Q9A4_VANPL (Uncharacterized protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835Q9A4_VANPL)

HSP 1 Score: 57.0 bits (136), Expect = 6.650e-7
Identity = 25/64 (39.06%), Postives = 45/64 (70.31%), Query Frame = 1

Query:   22 VLGSKVKNDDWTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIE 213
            ++G+   +++W+ +E+ +FE+A+A F+E    RW KVA+++PGK  +DV++ Y+ L  DV  IE
Sbjct:   23 IIGNNKSSENWSQQENKLFENALAHFDEHTPNRWEKVAAMIPGKTVDDVKNHYEVLKEDVSCIE 86

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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A5J5BI44_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BI44_9ASTE)

HSP 1 Score: 56.6 bits (135), Expect = 9.720e-7
Identity = 24/56 (42.86%), Postives = 42/56 (75.00%), Query Frame = 1

Query:   49 DWTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIEN 216
            +W+ E+D  FE+A+A + E  + RW K+AS++PGK+ E+++H Y+ L  DV++IE+
Sbjct:   10 EWSREQDKAFENALATYPEDSSDRWEKIASVVPGKSFEEIKHHYELLVDDVNQIES 65

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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A1S2YTX2_CICAR (transcription factor SRM1-like n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2YTX2_CICAR)

HSP 1 Score: 55.8 bits (133), Expect = 1.680e-6
Identity = 23/56 (41.07%), Postives = 41/56 (73.21%), Query Frame = 1

Query:   49 DWTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIEN 216
            +W+ EED+ FE+A+A + E D  RW K+A+ +PGK  +++++ Y+ L YD++ IE+
Sbjct:   13 EWSREEDIAFENALAIYPENDVNRWEKIAADVPGKTLQEIKYHYEVLVYDINLIES 68

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BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Match: A0A314XZK2_PRUYE (Transcription factor DIVARICATA n=7 Tax=Prunus TaxID=3754 RepID=A0A314XZK2_PRUYE)

HSP 1 Score: 55.5 bits (132), Expect = 2.270e-6
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1

Query:   40 KNDDWTFEEDMVFEHAMAEFEETDALRWLKVASLLPGKNQEDVRHRYQRLYYDVHRIEN 216
            ++ +WT EE+  FE A+A F+E    RWLKVAS++PGK   DV  +YQ L  DV  IE+
Sbjct:   21 QSSEWTKEENKKFESALAMFDEKTPDRWLKVASMIPGKTVIDVIKQYQELEEDVSEIES 79

The following BLAST results are available for this feature:

BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot

BLAST of mRNA_D-mesarthrocarpus_Contig10040.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
D7FHQ0_ECTSI	1.930e-48	79.25	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K4R8_9PHAE	3.750e-45	80.58	Myb-like domain-containing protein n=1 Tax=Ectocar...	[more]
A0A836CHK7_9STRA	6.560e-15	51.28	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S4D6G4_HETAK	5.430e-10	53.70	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A5D6XTB4_9STRA	4.570e-7	45.00	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
A0A834GHP1_RHOSS	6.080e-7	43.55	Uncharacterized protein n=2 Tax=Rhododendron TaxID...	[more]
A0A835Q9A4_VANPL	6.650e-7	39.06	Uncharacterized protein n=2 Tax=Vanilla planifolia...	[more]
A0A5J5BI44_9ASTE	9.720e-7	42.86	Uncharacterized protein n=1 Tax=Nyssa sinensis Tax...	[more]
A0A1S2YTX2_CICAR	1.680e-6	41.07	transcription factor SRM1-like n=1 Tax=Cicer ariet...	[more]
A0A314XZK2_PRUYE	2.270e-6	49.15	Transcription factor DIVARICATA n=7 Tax=Prunus Tax...	[more]

Pages

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-mesarthrocarpus_Contig10040:97..1331-
coding sequence from alignment at D-mesarthrocarpus_Contig10040:97..1331-

protein sequence of mRNA_D-mesarthrocarpus_Contig10040.1.1

>prot_D-mesarthrocarpus_Contig10040.1.1 ID=prot_D-mesarthrocarpus_Contig10040.1.1|Name=mRNA_D-mesarthrocarpus_Contig10040.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=136bp
QHEQDGRVLGSKVKNDDWTFEEDMVFEHAMAEFEETDALRWLKVASLLPG
KNQEDVRHRYQRLYYDVHRIENNVPSDMKYVKPKAGKSLLAKVAAKSSVS
GKSRGGGGMGINGGGGGGGGGGATKAPRAKGQAKAK

mRNA from alignment at D-mesarthrocarpus_Contig10040:97..1331-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-mesarthrocarpus_Contig10040.1.1 ID=mRNA_D-mesarthrocarpus_Contig10040.1.1|Name=mRNA_D-mesarthrocarpus_Contig10040.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1235bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10040:97..1331- (Discosporangium mesarthrocarpum MT17_79)
CAGCATGAGCAGGATGGGAGGGTCCTTGGCAGCAAGGTCAAGAATGACGA
CTGGACCTTCGAGGAGGACATGGTCTTTGAGCATGCCATGGCAGAGTTTG
AGGAGACGGTGGGTCCTTCACTGTTCAAGCCTCTGACCCTCACCCTAACC
CTAAGCCTCGGGGCAGCATAAAAGGCATTTGCAGTTGAGGTCTACCCATG
GGGGTTGATGGATTTCTAATCGCACCCTCGGCAATTCGGTTGTCTGTGGC
TGAGCAATACCCCAGAGCATGCCTGCCTGAGCTCTGAGGGCTAACAAGGG
GTGCTCTAGAACCGATAGGAAAATGGTACAGAGCTGATATGAATGCTGTA
GAGCTTGTGAGAAAAACTCTGTGCACGTTCATGTGTGTGTATGCCCGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTTGTCATTTTTATCCTGCAGATTGC
ACCGGTACCTAGGGGAGCAAAAACACTCCCTCTCCCTCCTGCACCTGTGC
TTGTTACTTGCCCTCAAGAATCGACCGTTGTCAAGATTGCTCGCAGTCAG
ATCGATAAGAGTCACCGATGCCCTCGATGCCCTGTGTGCCATGTACACCC
TGAGCGCAGGACGCCCTGCGGTGGCTGAAGGTGGCCTCCCTCCTCCCAGG
AAAGAACCAGGAGGATGTGCGGCATCGATACCAGAGGTTATACTACGATG
TCCATCGAATAGAGAACAATGTCCCGGTGAGGCCCTGGGGCAATTGCCAA
CAGCTTGGTGCTTGCCCATGGGCCGACCATAGAGGGTATACATCATTGCT
TTGTCGGAGGAGTGCATATGCATGGGAGCAAGCCCAGCCCAGCACTCAGT
AGCCGTCAACCCGTAATCCTGATTCCAAGCTTTACCCTATCCGTACACAC
CCCGGTGCCCTGAACACCATCCCTACACTGTGTACTGGCGCAATATGCAC
TGGCATTTCATTGTCATCATCATCATCATCATCATCATCACGTTAATCAT
TCTCATCATCATCATCACCATCAAATACCGTTGCCCCCCCTCCCCACAAA
AGAGTGACATGAAGTATGTCAAGCCCAAAGCAGGGAAGTCCCTGCTAGCC
AAAGTCGCAGCGAAAAGCTCGGTATCAGGGAAGTCCAGGGGTGGAGGGGG
GATGGGAATAAATGGGGGCGGGGGGGGCGGGGGGGGCGGGGGGGCAACCA
AGGCACCGCGGGCAAAGGGGCAGGCTAAGGCTAAG

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10040:97..1331-

>mRNA_D-mesarthrocarpus_Contig10040.1.1 ID=mRNA_D-mesarthrocarpus_Contig10040.1.1|Name=mRNA_D-mesarthrocarpus_Contig10040.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=408bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10040:97..1331- (Discosporangium mesarthrocarpum MT17_79)
CAGCATGAGCAGGATGGGAGGGTCCTTGGCAGCAAGGTCAAGAATGACGA
CTGGACCTTCGAGGAGGACATGGTCTTTGAGCATGCCATGGCAGAGTTTG
AGGAGACGGACGCCCTGCGGTGGCTGAAGGTGGCCTCCCTCCTCCCAGGA
AAGAACCAGGAGGATGTGCGGCATCGATACCAGAGGTTATACTACGATGT
CCATCGAATAGAGAACAATGTCCCGAGTGACATGAAGTATGTCAAGCCCA
AAGCAGGGAAGTCCCTGCTAGCCAAAGTCGCAGCGAAAAGCTCGGTATCA
GGGAAGTCCAGGGGTGGAGGGGGGATGGGAATAAATGGGGGCGGGGGGGG
CGGGGGGGGCGGGGGGGCAACCAAGGCACCGCGGGCAAAGGGGCAGGCTA
AGGCTAAG