mRNA_D-mesarthrocarpus_Contig1004.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: D7FM82_ECTSI (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM82_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 1.310e-20 Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 2 Query: 287 VKLSICGDDQVD-GEEEMEEMLVDGPKGKEWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
VKL +CG+ + D G+EEMEEML +GP GKEWGGPTRGG L EPTRFGDWERKGRCSDF
Sbjct: 74 VKLDLCGEIEDDVGDEEMEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 131
BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: A0A7S3ZNR7_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNR7_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.140e-16 Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 2 Query: 275 EPDNVKLSICGDDQVDGEEEMEEMLVDGPKGKEWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
+P K+++ D +VD +++ME+M VD GKEWGGPTRGGR+ EPTRFGDWERKGR +DF
Sbjct: 59 DPPPTKMNVAVDAEVDEDDDMEDMFVDTNMGKEWGGPTRGGRMPEPTRFGDWERKGRATDF 119
BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: A0A7S1U9V4_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9V4_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 2.730e-16 Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 2 Query: 326 EEEMEEMLVDGPKGKEWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
EE+ EEM++DGP GKEWGGP RGG+L+EPTRFGDWERKGRC+DF
Sbjct: 96 EEDWEEMILDGPAGKEWGGPRRGGKLAEPTRFGDWERKGRCTDF 139
BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: W7TYA2_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYA2_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 3.540e-15 Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 2 Query: 287 VKLSICGDDQVDGEEEMEEMLVDGPKGK-EWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
VK CG+ + + E+EMEEM V GP G+ EWGGPTRGGR EPTRFGDWERKGRC+DF
Sbjct: 109 VKKDTCGEVE-EAEDEMEEMFVMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDF 165
BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: A0A6G0WXB9_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXB9_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 5.290e-15 Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 2 Query: 311 DQVDGEEEMEEMLVDGPKGKEWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
D+ D EE+ME+M+V GP G EWGGP RGG+ EPTRFGDWE+KGRC DF
Sbjct: 47 DEDDDEEDMEDMVVIGPAGTEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 95
BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: W4GYH8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYH8_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 6.360e-15 Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 2 Query: 311 DQVDGEEEMEEMLVDGPKGKEWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
D+ D EE+ME+M+V GP G EWGGP RGG+ EPTRFGDWE+KGRC DF
Sbjct: 42 DEDDDEEDMEDMVVIGPAGVEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 90
BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: A0A7S2BKF7_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BKF7_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 7.000e-15 Identity = 44/83 (53.01%), Postives = 54/83 (65.06%), Query Frame = 2 Query: 236 SVNVKVERTELAKE---PDNVKLSICGDDQVDGEE------EMEEMLVDGPKGKEWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
+ N + + +LA E P VK++ CG +D EE E EEM V+ P G EWGGP RGGR++EP RFGDWERKGRCSDF
Sbjct: 89 AANAQQKAFDLAAELSTPQGVKMAACG---LDDEEXXXXXXEWEEMFVETPVGLEWGGPLRGGRMAEPVRFGDWERKGRCSDF 168
BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: A0A024U2R8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2R8_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.340e-14 Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 2 Query: 311 DQVDGEEEMEEMLVDGPKGKEWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
D+ D EE+ME+M++ GP G EWGGP RGG+ EPTRFGDWE+KGRC DF
Sbjct: 46 DEDDDEEDMEDMVMIGPAGTEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 94
BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: A0A835YQ12_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ12_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 3.890e-14 Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 2 Query: 326 EEEMEEMLVDGPKGK-EWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
EE+ME+M V GP G E+GGPTRGG+L+EPTRFGDWERKGRC+DF
Sbjct: 5 EEDMEQMFVPGPDGSMEYGGPTRGGKLAEPTRFGDWERKGRCTDF 49
BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Match: A0A225W1X5_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W1X5_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 6.980e-14 Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 2 Query: 308 DDQVDGEEEMEEMLVDGPKGKEWGGPTRGGRLSEPTRFGDWERKGRCSDF 457
DD D +++ E+M+ GP G E+GGPTRGG+L EPTRFGDWERKGRCSDF
Sbjct: 47 DDLDDEDDDGEDMVAIGPSGVEYGGPTRGGKLKEPTRFGDWERKGRCSDF 96 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1004.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig1004.4.1 >prot_D-mesarthrocarpus_Contig1004.4.1 ID=prot_D-mesarthrocarpus_Contig1004.4.1|Name=mRNA_D-mesarthrocarpus_Contig1004.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=118bp MAALRQIRLTFAPGFTSLSRRSPTMPLQHCKFVSGTTETTPTKSVNVKVEback to top mRNA from alignment at D-mesarthrocarpus_Contig1004:7210..8545+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig1004.4.1 ID=mRNA_D-mesarthrocarpus_Contig1004.4.1|Name=mRNA_D-mesarthrocarpus_Contig1004.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1336bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1004:7210..8545+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1004:7210..8545+ >mRNA_D-mesarthrocarpus_Contig1004.4.1 ID=mRNA_D-mesarthrocarpus_Contig1004.4.1|Name=mRNA_D-mesarthrocarpus_Contig1004.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=354bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1004:7210..8545+ (Discosporangium mesarthrocarpum MT17_79)back to top |