mRNA_D-mesarthrocarpus_Contig1004.3.4 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Match: D7FM81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM81_ECTSI) HSP 1 Score: 218 bits (556), Expect = 3.630e-65 Identity = 114/181 (62.98%), Postives = 141/181 (77.90%), Query Frame = 3 Query: 186 VHVYSLDGKERKRVARSLQGRFGGVGMIAIPRALLRTELKGIKLGNEDRPG--MIVLCHYNEGRVLLTDQDGMYNDFILEACRVTGGNVFVALAPVTTSATVLANERLVTALAYTGGQQGLLSIHLQQRFLTWGKTPNETQLQIMLKAMRGEIAALEVPASVLEYS-GQRRWTSTSFCNLL 719 V VYSLD KE++RVA++L+ G ++ P LLR+ELKGIKL + R G +I+LCHYNEGRVLLTD+DGMYNDFI+EACRVTGGNVFVALAPV+TSAT LANE LVTALAY+GGQQGLLSIH+Q+RFLTW K P+E Q++ + G VP SVLE+S G++ ++SFCN+L Sbjct: 2 VDVYSLDSKEQQRVAKALRQALGEDVEVSSPPPLLRSELKGIKLREDGRDGGRLILLCHYNEGRVLLTDEDGMYNDFIMEACRVTGGNVFVALAPVSTSATSLANETLVTALAYSGGQQGLLSIHIQKRFLTWNKAPSEAQVKCFRPPLDGTREPFSVPESVLEHSEGRQGGRASSFCNIL 182
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Match: A0A836C8Z1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Z1_9STRA) HSP 1 Score: 145 bits (365), Expect = 3.490e-37 Identity = 80/181 (44.20%), Postives = 114/181 (62.98%), Query Frame = 3 Query: 177 PFAVHVYSLDGKERKRVARSLQGRFGGVGMIAIPRALLRTELKGIKLGNEDRPGMIVLCHYNEGRVLLTDQDGMYNDFILEACRVTGGNVFVALAPVTTSATVLANERLVTALAYTGGQQGLLSIHLQQRFLTWGKTPNETQLQIMLKAMRGEIAALEVPASVLEYSGQRRWTSTSFCNLL 719 P+ + V D +ERK+ R+L RF ++ + L +ELKGIKL + + +L H++EGRVLLTD+DG+YNDF+LEA ++ GGN+ +A++ V T+ LA+E +V ALAY+GGQ+ +LSIH Q+RFLTW K P L + A+ G + L VP SV YS R FC +L Sbjct: 9 PYTILVCGTDPRERKKTRRALAARFREQAVVG-EQPLTVSELKGIKLRGP-KTDLALLVHFSEGRVLLTDKDGLYNDFLLEAVKLAGGNLLIAVSGVETAPGTLAHEGVVQALAYSGGQRAVLSIHQQKRFLTWAKEPAPVHLDHIAAALAGNVRLLAVPDSVNMYSSALR---RRFCQIL 184
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Match: A0A7R9UAW8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAW8_9STRA) HSP 1 Score: 134 bits (336), Expect = 4.500e-33 Identity = 72/182 (39.56%), Postives = 113/182 (62.09%), Query Frame = 3 Query: 183 AVHVYSLDGKERKRVARSLQG--RFGGVGMIAI-PRALLRTELKGIKLGNEDRPGMIVLCHYNEGRVLLTDQDGMYNDFILEACRVTGGNVFVALAPVTTSATVLANERLVTALAYTGGQQGLLSIHLQQRFLTWGKTPNETQLQIMLKAMRGEIAALEVPASVLEYSGQRRWTSTSFCNLL 719 +VHVY+L G ER+++ + ++ + GV +A+ P+ L ELK G + +++LCHYNEGRVL+TD+DGMYNDF++ A + GGNV + ++ V TS LAN V +L + G Q + IH Q+R LTW +P+ + +LKA++G++ L++P SVLE+S + C +L Sbjct: 3 SVHVYALLGSERRQLVKHVEQVCKTAGVKQVAVTPKKLQLKELKSDAFGLD--ASLVILCHYNEGRVLITDRDGMYNDFLVVASKNAGGNVLLVVSGVDTSDGELANTSFVDSLVWEGAQNAVGEIHTQRRLLTWNGSPSSFHKEHILKAVQGQLEPLQLPHSVLEHSSLAQPKKGFLCAIL 182
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Match: A0A7S2XXL6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXL6_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.080e-30 Identity = 72/181 (39.78%), Postives = 113/181 (62.43%), Query Frame = 3 Query: 180 FAVHVYSLDGKERKRVARSLQG-RFGGVGMIAIPRALLRTELKGIKLGNEDRPGMIVLCHYNEGRVLLTDQDGMYNDFILEACRVTGGNVFVALAPVTTSATVLANERLVTALAYTGGQQGLLSIHLQQRFLTWGKTPNETQLQIMLKAMRGEIAALEVPASVLEYSGQRRWTSTSFCNLL 719 + V +YSLD +ER ++ ++ G G ++ L RT LK + L + P MI+LCHYNEGR+LLTDQDG+YN+FI EA + TGGNVF+ + +++S VLA++R+V++L + GQ + I +R LTW P+ QL+ + A+RG++ LE P ++L + ++ +C LL Sbjct: 4 YRVDIYSLDRRERYVLSETMNGIACGEKKLVLNSNPLSRTMLKDMVLCSG--PDMIILCHYNEGRLLLTDQDGLYNNFIKEAVKATGGNVFLVVTGLSSSGGVLADKRVVSSLV-SNGQSSIQYIDSARRLLTWDGAPSRDQLEHLQLAVRGKVDPLETPETILRHCFAKK-VKAFYCVLL 180
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Match: A0A7S1XMY7_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMY7_9STRA) HSP 1 Score: 129 bits (325), Expect = 2.960e-30 Identity = 67/168 (39.88%), Postives = 110/168 (65.48%), Query Frame = 3 Query: 186 VHVYSLDGKERKRVARSLQG--RFGGVGMIAI-PRALLRTELK-GIKLGNEDRPGMIVLCHYNEGRVLLTDQDGMYNDFILEACRVTGGNVFVALAPVTTSATVLANERLVTALAYTGGQQGLLSIHLQQRFLTWGKTPNETQLQIMLKAMRGEIAALEVPASVLEYS 677 V VY++ G ER+ + ++++ + G+G + + P LL +LK G+++G + +++LCHYNEGRVLLTD+DGMYNDF++ A R GGN+ + ++ V T LAN V +L + G Q + ++ Q R LTW TP+ + +LKA++G+++ LE+P SV+EY+ Sbjct: 114 VEVYAVLGSERRALVKAVEKVCKSAGLGDVQVLPEKLLLKDLKEGVEVGAD--ASLVILCHYNEGRVLLTDRDGMYNDFLVVAHRNCGGNILLVISGVETEGDSLANTAFVDSLVWEGAQNAMGELNTQGRLLTWKGTPSSAHKEQILKALQGQLSPLELPESVIEYA 279
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Match: A0A7S2SN66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN66_9STRA) HSP 1 Score: 112 bits (281), Expect = 3.670e-25 Identity = 67/161 (41.61%), Postives = 97/161 (60.25%), Query Frame = 3 Query: 192 VYSLDGKERKRVARSLQGRFGGVGMIAIPRALLRTELKGIKLGNE-DRPGMIVLCHYNEGRVLLTDQDGMYNDFILEACRVTGGNVFVALAPVTTSATVLANERLVTALAYTGGQQGLLSIHLQQRFLTWGKTPNETQLQIMLKAMRGE--IAALEVPASV 665 VY+LD +E + VA +L+ R G G A+ R L E++ + + D P I+LCH+ EGR LLTD DG+YN F+ +A + GNVF+AL ++T VLAN +V L + GGQ + SIH +RFLT+ P E QLQ + ++ E +A L VP+ + Sbjct: 14 VYTLDPEEHRGVAEALE-RSTGCG--AVVRPLRLKEVRHFRFPRDTDTPDAIILCHFAEGRTLLTDTDGLYNAFLSQAVPMVHGNVFLALTNISTPPEVLANSEVVAELVHQGGQGSIGSIHSARRFLTFQDEPAELQLQHIASSLAHEAPVAPLSVPSGI 171
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Match: A0A7S3JRP1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRP1_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.840e-16 Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = 3 Query: 321 NEDRPGMIVLCHYNEGRVLLTDQDGMYNDFILEACRVTGGNVFVALAPVTTSATVLANERLVTALAYTGGQQGLLSIHLQQRFLTWGKTPNETQLQIMLKAMRGEI--AALEVPASVLEYSGQRR 689 N +I+LCHY +GR LLTD DG+YN F++EA TGG VFVAL V LA L+ L + G Q + +H Q+RF TW P++ Q+ I++ A + E L++P S+ E++ R Sbjct: 46 NVKEKDVILLCHYFDGRTLLTDNDGLYNTFLVEAVAATGGYVFVALTGVPADDR-LARLDLINQLTHDG-QTSISELHRQKRFFTWDSFPSKAQVNIIVSAAKDEKEQCPLQLPISIKEHAAAYR 168
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Match: A0A0G4EHK5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EHK5_VITBC) HSP 1 Score: 69.7 bits (169), Expect = 2.330e-10 Identity = 39/113 (34.51%), Postives = 65/113 (57.52%), Query Frame = 3 Query: 288 LRTELKGIKLGNEDRP-GMIVLCHYNEGRVLLTDQDGMYNDFILEAC-RVTGGNVFVALAPVTTSATVLANERLVTALAYTGGQQGLLSIHLQQRFLTWGKTPNETQLQIMLK 620 ++ +L+G L M+V+ H NEGR+LLTD++G+YND +L+AC T NV + + V TS L + LV LA+ Q + ++ R +T+ +TP++ Q +L+ Sbjct: 1 MKAQLRGFLLAERKTAVDMVVIVHRNEGRLLLTDRNGLYND-VLQACWHATNANVVIIVTKVPTSPDTLNDSALVATLAHHADQPTIGALSAAGRLITYDQTPSQRQADYLLE 112 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1004.3.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig1004.3.4 >prot_D-mesarthrocarpus_Contig1004.3.4 ID=prot_D-mesarthrocarpus_Contig1004.3.4|Name=mRNA_D-mesarthrocarpus_Contig1004.3.4|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=204bp MDSGDDVLPADSKLEPPTRFAEPFAVHVYSLDGKERKRVARSLQGRFGGVback to top mRNA from alignment at D-mesarthrocarpus_Contig1004:4281..7164- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig1004.3.4 ID=mRNA_D-mesarthrocarpus_Contig1004.3.4|Name=mRNA_D-mesarthrocarpus_Contig1004.3.4|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2884bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1004:4281..7164- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1004:4281..7164- >mRNA_D-mesarthrocarpus_Contig1004.3.4 ID=mRNA_D-mesarthrocarpus_Contig1004.3.4|Name=mRNA_D-mesarthrocarpus_Contig1004.3.4|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=612bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1004:4281..7164- (Discosporangium mesarthrocarpum MT17_79)back to top |