Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10031.2.1 vs. uniprot
Match:
D7FKI7_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKI7_ECTSI)
HSP 1 Score: 83.2 bits (204), Expect = 8.790e-14
Identity = 50/118 (42.37%), Postives = 62/118 (52.54%), Query Frame = 1
Query: 1 GNWTEALSRALSRQGSPERPDRGSGGGGWGGVAFRDSEEEVGSEEDASVARFVLMLLQYNFPFVSHVRGDMTACLQQLSTQGMEEDSSGHSRGSKGRGSPAKAVDLLDSVLIGTEAER 354
G + SRALSR G G A +D EEE+G EED V R VLMLLQYNFPF+SHVRGDM A L++LS Q + E H+ + L LIG +++R
Sbjct: 534 GGFFGGFSRALSR------------GYGHAAAASKDGEEEIGREEDVQVTRLVLMLLQYNFPFISHVRGDMAAILEELSAQALAEKEGQHADN-------GDFHETLHGALIGADSDR 632
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10031.2.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 8.79e-14 / Id = 42.37 Sequence D7FKI7_ECTSI
Match Name E-value Identity Description
D7FKI7_ECTSI 8.790e-14 42.37 Rab-GAP TBC domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 0 Seed ortholog 2880.D7FKI7 Preferred name TBC1D23 PFAMs RabGAP-TBC,Rhodanese Model size 998 Max annot lvl 2759|Eukaryota Hectar predicted targeting category other localisation GOs GO:0000003,GO:0001667,GO:0001817,GO:0001819,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006928,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007417,GO:0007420,GO:0008047,GO:0008150,GO:0009790,GO:0009888,GO:0009987,GO:0010631,GO:0012505,GO:0016043,GO:0016192,GO:0016197,GO:0016477,GO:0016482,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0030695,GO:0030707,GO:0030855,GO:0031175,GO:0031347,GO:0031984,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0032675,GO:0032680,GO:0032755,GO:0040011,GO:0042147,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046907,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048568,GO:0048583,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050727,GO:0050789,GO:0050790,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0060322,GO:0060429,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0080134,GO:0090130,GO:0090132,GO:0098772,GO:0098791,GO:0120036,GO:1903555,GO:1990403 Exons 2 Evalue 1.64e-16 EggNOG OGs KOG3636@1|root,KOG3636@2759|Eukaryota Description embryonic brain development Cds size 390 COG category S
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789149.505442-UTR-D-mesarthrocarpus_Contig10031:2659..3266 1680789149.505442-UTR-D-mesarthrocarpus_Contig10031:2659..3266 Discosporangium mesarthrocarpum MT17_79 UTR D-mesarthrocarpus_Contig10031 2660..3266 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789149.5196378-CDS-D-mesarthrocarpus_Contig10031:3266..3413 1680789149.5196378-CDS-D-mesarthrocarpus_Contig10031:3266..3413 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10031 3267..3413 - 1680789149.5351636-CDS-D-mesarthrocarpus_Contig10031:4245..4488 1680789149.5351636-CDS-D-mesarthrocarpus_Contig10031:4245..4488 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10031 4246..4488 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10031.2.1
>prot_D-mesarthrocarpus_Contig10031.2.1 ID=prot_D-mesarthrocarpus_Contig10031.2.1|Name=mRNA_D-mesarthrocarpus_Contig10031.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=130bp
GNWTEALSRALSRQGSPERPDRGSGGGGWGGVAFRDSEEEVGSEEDASVA back to top mRNA from alignment at D-mesarthrocarpus_Contig10031:2660..4488-
Legend: polypeptide CDS UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10031.2.1 ID=mRNA_D-mesarthrocarpus_Contig10031.2.1|Name=mRNA_D-mesarthrocarpus_Contig10031.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1829bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10031:2660..4488- (Discosporangium mesarthrocarpum MT17_79)GGCAACTGGACAGAGGCGTTGTCGAGGGCGTTATCTCGCCAGGGATCGCC
GGAGAGGCCAGACCGAGGCAGTGGGGGGGGCGGCTGGGGAGGTGTGGCGT
TCAGGGATTCGGAGGAGGAGGTGGGGAGTGAGGAGGATGCAAGCGTGGCA
CGTTTTGTCCTGATGCTGCTCCAGTACAACTTCCCCTTCGTCAGCCACGT
GAGGGGCGACATGACAGCCTGCCTGCAGCAGTTGAGCACGCAG GTAGGTA
GGTGTGTGTGTGTACCTGTTGAGGAATTTTCATCCCGCCGCCGCCGCCGC
CGCCGCCGCCGCCGCTGCAGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCAACTGCGGTCTCTGCCGGAGTTGCGAGAATAGTTGCGCAACGGCAG
TTACAACGGCGGTTACAGCGGCAGTTTCAGCGGTACTGTTGCTGCTTTTG
CAGAGATTGGACACCGAAGGGTTAATCTGGTGCAGAACCGGTTAGCGTGG
GCGTTGACAGTGCTGGGCTTATGTCGATCCAAGGTTTTACGTGCCCCCTC
GCAAGTGCGAGAGCACCTGTGCAGAGAGAGAGGGGAAAAAACACCCTGCG
AACCTTAGGGTCGATCCCTGTCCGCGAACGCGGCTGCGGTACTTAGACTG
GAGTCCTAGCGTACCCCTGCTGACAGGGGGGTTGGAGCCGAAAGGAAAGA
CCACACCAGCGGGGATAAGAAAAAGAGCCACAGGTTGGAGGCCGTACGTA
GATTTACTGCGGCATAGGGAGATAACAAACAAGGTCAATCTGATCGTTGT
AATTGGTGAAAAGTAAGGGTTGGGGTTGATTGAGAGGCCGGTTTTGAAGT
CCAATACGTGCTTGTCCAACAAGAGTGACTTTCTGTTTTCTGCCTCTCCA
ACAAGAGTGACTTTCCATTTCTGCCTCTCCAACAAGAGTGACCTTCCCAT
CTCTGCCTCTCTAACACAACAATAGTATTTATTTATAATGATATAACAAC
AATGATGATCACCTCTACTGCACATATTGGTCTGGAGTGACATTCCCGTT
TCCCTCTGCGTGTGCCTCTACCTAGGGCATGGAGGAGGACTCGTCTGGGC
ATAGCAGAGGAAGCAAGGGAAGGGGCAGTCCGGCCAAGGCTGTTGACCTG
CTCGACAGCGTTCTGATTGGCACTGAAGCGGAGAGGTACTGGCTCTTTAT
TCCAATAAGTACGTTAGCGTAA GGGTAATGATAAGATAGAAACACCGCGC
GCTTCTAAGAGCCTGTGCAACATGCACACACAAGACGTGTGGTACATTTT
CAAGAATGCCATGCCTGACCCCGCCTCTGTGTGCTGCAGTGGTGGTAAGG
TGTGAATGGACCTCACTGCATCTTTCCTTCACACGACGACTTGATTCTGT
TAATGTCAAGGGGAGAGAGAGAGAAAGAGAAAGAGAAAAAGAAAAAGAGA
GAAAGAGAAAGAGAGAAAGAGAGATAATCCAGAAGAGAGAGGTAGAGAGA
GAGAGAGACTACTACCAAGCAGAGCTAAAAATAAGGGGGGGAAACAAGCA
GTGAGAAACAAGCAGTGAGAAACAAGCAGTGAGAAAGTGCTTCGACAGGC
AGCATGTTTTCAAGGCACGCTGACTGTAGTCCAACAATCGTAGGACCACT
AACCCTAACCCTAACCCTAACCCTAACCCTAACCCTACAAACTTTCAAGC
GCGAGTGTGTTTTCGAGGAAAGCTATCCCCCCTCCCCTGACAAGAACAAG
AACGCTTTGGAAATCCAAGCGATTTTTTCCAAGAAAAGTGCCCCTACGCC
AAAGGCTATCAAATAGGAACAACTCCCGG back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10031:2660..4488-
>mRNA_D-mesarthrocarpus_Contig10031.2.1 ID=mRNA_D-mesarthrocarpus_Contig10031.2.1|Name=mRNA_D-mesarthrocarpus_Contig10031.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=390bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10031:2660..4488- (Discosporangium mesarthrocarpum MT17_79) back to top