mRNA_D-mesarthrocarpus_Contig10023.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_D-mesarthrocarpus_Contig10023.1.1
Unique Name	mRNA_D-mesarthrocarpus_Contig10023.1.1
Type	mRNA
Organism	Discosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)

Homology

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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A835YN33_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN33_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.310e-16
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 1

Query:   85 RLVHPPKRSQSEQRFRGMGPRGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMSKTRRMIEA 345
            R   P +R     R+ G GP+ VSK + RA LE  FDRP++ A RALGVS+TI+KRLCR+ GI +WPYRQ+  +   ++K  ++++A
Sbjct:   15 RKKSPAQREPLHVRYYGNGPKSVSKHMTRAKLEALFDRPVEHAARALGVSSTIIKRLCRRHGIPKWPYRQLLRLETQIAKQEQILQA 101

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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: D8LJT6_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT6_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.430e-14
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1

Query:  145 RGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAM 318
            RG SKRV    LE YF+ P++E  + +GVSTTI+KRLCRK GI RWPYRQI SVNK++
Sbjct:  100 RGFSKRVTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSI 157

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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A6H5K0H9_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H9_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 6.350e-14
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1

Query:  145 RGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAM 318
            RG SKRV    LE YF+ P+++  + +GVSTTI+KRLCRK GI RWPYRQI SVNK++
Sbjct:  102 RGFSKRVTLRDLERYFEYPIEDVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSI 159

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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A835YUV9_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 9.700e-13
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1

Query:  154 SKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMS 321
            SK + R  LE+ F+RP+ EA + LGVSTTIVKRLCR+ GI +WP+R +  V + MS
Sbjct:    1 SKSMKRETLESLFNRPVTEAAKELGVSTTIVKRLCRRYGIQKWPFRSLVRVQRTMS 56

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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A835YTV5_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTV5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.280e-12
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 1

Query:  163 VNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSV 306
            + RA LE  FDRP+++A RALGVS+TI+KRLCR+ GI +WPYRQ+  +
Sbjct:    1 MTRAKLEVLFDRPVEQAARALGVSSTIIKRLCRRHGIPKWPYRQLLRI 48

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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A835YW93_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW93_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.810e-11
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 1

Query:  145 RGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMSKTRRM 336
            R VS+RV+ AVLE  ++ PL  A + L VS T++K+LCR+ GI RWP+RQI S++K M K + M
Sbjct:    6 REVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQEM 69

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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A3F2RQU3_9STRA (RWP-RK domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQU3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.780e-10
Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = 1

Query:   88 LVHPPKRSQSEQRFRGMGPRGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMS 321
            LV PP R  S            ++ +N  +L+ +F+RPL +A  + GV TT++K++CR+ GIS WPYR+IC + K+++
Sbjct:   15 LVMPPTRPISN----------ATRNINFGMLQPHFERPLQQAADSFGVCTTLLKKICRRNGISNWPYRKICGLRKSIA 82

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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A421GA03_9STRA (RWP-RK domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GA03_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.420e-9
Identity = 29/90 (32.22%), Postives = 53/90 (58.89%), Query Frame = 1

Query:  178 LETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMSKTRRMIEAAKNPQNLRKLKVKMRWLEDQMQHLFADPTPLGNF 447
            L  +F +P+ E  R LG+ TT +K++CR++GI RWP+RQI S+ + +    ++   A  PQ   K + ++  L+++ + + A+P   G  
Sbjct:   95 LRAHFGKPIVEVARELGICTTFLKKICRRLGIKRWPHRQIRSLARTIQMLEQVEAVATTPQEKNKYETQIAQLKEKQRAVMANPDANGKL 184

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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: K8YW24_NANGC (Rwp-rk domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YW24_NANGC)

HSP 1 Score: 65.5 bits (158), Expect = 2.190e-9
Identity = 35/104 (33.65%), Postives = 61/104 (58.65%), Query Frame = 1

Query:  157 KRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMSKTRRMIEAAK--------NPQNLRKLKVKMRWLEDQMQHLFADPTPLGN 444
            K V+   L  YFDRP+++A RALG+ +T++K++CR+  I RWPYRQ+ S+++ +   +  +  A+        +P+   +L  ++R LE +   L    T LG+
Sbjct:  325 KSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSLDRTLECLKVAMTTARASAGQPGHDPKEEARLCQQIRVLEARKVELIESSTTLGS 428

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BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Match: A0A0Q3PUU3_BRADI (Uncharacterized protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3PUU3_BRADI)

HSP 1 Score: 65.5 bits (158), Expect = 2.250e-9
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 1

Query:  109 SQSEQRFRGMGPRGVSKRVNRAVLETYFDRPLDEAGRALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMSKTRR 333
            SQ E++  G   R   K V    L+ YF   L +A R+LGV  T +KR+CR+ GISRWP+R+I  VN+A+SK RR
Sbjct:  496 SQPEKKKTG---RKAGKPVGLKELQGYFSGSLKDAARSLGVCPTTMKRICRQHGISRWPFRKISKVNRALSKIRR 567

The following BLAST results are available for this feature:

BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot

BLAST of mRNA_D-mesarthrocarpus_Contig10023.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
A0A835YN33_9STRA	1.310e-16	47.13	RWP-RK domain-containing protein n=1 Tax=Tribonema...	[more]
D8LJT6_ECTSI	2.430e-14	63.79	Putative NIN-like transcription factor n=1 Tax=Ect...	[more]
A0A6H5K0H9_9PHAE	6.350e-14	62.07	RWP-RK domain-containing protein n=1 Tax=Ectocarpu...	[more]
A0A835YUV9_9STRA	9.700e-13	55.36	RWP-RK domain-containing protein (Fragment) n=1 Ta...	[more]
A0A835YTV5_9STRA	1.280e-12	60.42	RWP-RK domain-containing protein n=1 Tax=Tribonema...	[more]
A0A835YW93_9STRA	3.810e-11	51.56	RWP-RK domain-containing protein (Fragment) n=1 Ta...	[more]
A0A3F2RQU3_9STRA	1.780e-10	38.46	RWP-RK domain-containing protein n=1 Tax=Phytophth...	[more]
A0A421GA03_9STRA	1.420e-9	32.22	RWP-RK domain-containing protein n=1 Tax=Phytophth...	[more]
K8YW24_NANGC	2.190e-9	33.65	Rwp-rk domain-containing protein n=1 Tax=Nannochlo...	[more]
A0A0Q3PUU3_BRADI	2.250e-9	48.00	Uncharacterized protein n=2 Tax=Brachypodium dista...	[more]

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Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-mesarthrocarpus_Contig10023:68..1414-
coding sequence from alignment at D-mesarthrocarpus_Contig10023:68..1414-

protein sequence of mRNA_D-mesarthrocarpus_Contig10023.1.1

>prot_D-mesarthrocarpus_Contig10023.1.1 ID=prot_D-mesarthrocarpus_Contig10023.1.1|Name=mRNA_D-mesarthrocarpus_Contig10023.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=142bp
MTPRPRRLVHPPKRSQSEQRFRGMGPRGVSKRVNRAVLETYFDRPLDEAG
RALGVSTTIVKRLCRKMGISRWPYRQICSVNKAMSKTRRMIEAAKNPQNL
RKLKVKMRWLEDQMQHLFADPTPLGNFGAYSQADPNQSEEE*

mRNA from alignment at D-mesarthrocarpus_Contig10023:68..1414-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-mesarthrocarpus_Contig10023.1.1 ID=mRNA_D-mesarthrocarpus_Contig10023.1.1|Name=mRNA_D-mesarthrocarpus_Contig10023.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1347bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10023:68..1414- (Discosporangium mesarthrocarpum MT17_79)
TAGCACGTTACGGCGGCTGGGAGACGCCGTGCTCGTGCAGTGGTCTACGG
CCTCAGCTAACCAAGGATGACTCCACGACCGAGGCGCCTGGTACATCCCC
CCAAACGCTCCCAGTCGGAACAGCGTTTCCGGGGGATGGGTCCAAGAGGC
GTATCCAAGCGGGTCAACCGAGCTGTCCTCGAAACTTACTTCGACCGTCC
CCTCGACGAAGCCGGCAGAGCCCTGGGGGTCTCAACCACTATCGTGAAAC
GCCTGTGCAGGAAGATGGGCATCAGCAGATGGCCCTACCGCCAGATATGC
AGCGTCAACAAGGCCATGTCGAAGACGAGAAGGATGATCGAGGCCGCGAA
AAACCCCCAAAACCTTCGCAAACTCAAGGTGATAACGATATCGTACTCTT
TGTGCCGGTCCCTCTGTGAGCTCCAGTGGCGAGTTTAGATACCGATGAAT
ATCTACTAAGCACAAAATACTCGTCTTTGCACCCCTGCCTTGATGCAGAC
ATCGATAACCGGGATCTTCTCGGCCACTTGCAAACATGGACACCAATCTT
GTTCACCGGAATAAACGATCAGGGACATGATATCTTGTACGTGGCGAGCT
GCCCTCGTCCAAAAAAAAGACAACTTAACAGCTACAACTACCTTAATCGG
GCTTGAATACGGTATCTGAAGCATCGCGATCCTGGCCAGATCTTCCAACA
CGAGACTGCCTCGAGAAAGTGCTCGAAGCTCTGTTATGTTTTTTCTCCCA
CCTTCCATCACTCCTTCCCTTTCGGATTGCGTTTCATCAAATGGTTCCCG
ATGCCCCTTGGGTCCCTGGCTGTCCCCTTCCCTCCCAATCATCCATCCTG
CCAAACATACTTTCTAACTTTGATAACCCCTATCCAAATTCCCTCACTCC
TTCTGACCTGTTTCCTACCCAACCATCCCGCCAAACCGTTTCCCACTTTC
ATCTCTCCCATCCAAAATCCATCAACCCCTTGGCCTGTTTCATGCTCAAC
CCTCCCGCCAAACCCACTTTTTTTCCCTTTGATAACCCCCATTTAAATCC
CCTCACCCCTCTGACCTGTTTCCGATCTAACCATCACGCCAAACCCGCCT
CTCACTTTCAACTCCGGCCTAAATTCCCTGAAATCCTATTGCCTATTTCC
TTCCCTATCTTCCCTACAACCCCCTTTGCTTCTCTTTGATAACCCCCGTC
TAACTTCCCTCCCCCCCTCTGCGTTCCCCACAGGTCAAGATGCGATGGTT
GGAGGATCAGATGCAGCATCTGTTCGCTGACCCAACCCCCCTGGGCAACT
TTGGGGCCTACTCCCAAGCTGATCCAAACCAGTCAGAGGAAGAATAG

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10023:68..1414-

>mRNA_D-mesarthrocarpus_Contig10023.1.1 ID=mRNA_D-mesarthrocarpus_Contig10023.1.1|Name=mRNA_D-mesarthrocarpus_Contig10023.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=426bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10023:68..1414- (Discosporangium mesarthrocarpum MT17_79)
ATGACTCCACGACCGAGGCGCCTGGTACATCCCCCCAAACGCTCCCAGTC
GGAACAGCGTTTCCGGGGGATGGGTCCAAGAGGCGTATCCAAGCGGGTCA
ACCGAGCTGTCCTCGAAACTTACTTCGACCGTCCCCTCGACGAAGCCGGC
AGAGCCCTGGGGGTCTCAACCACTATCGTGAAACGCCTGTGCAGGAAGAT
GGGCATCAGCAGATGGCCCTACCGCCAGATATGCAGCGTCAACAAGGCCA
TGTCGAAGACGAGAAGGATGATCGAGGCCGCGAAAAACCCCCAAAACCTT
CGCAAACTCAAGGTCAAGATGCGATGGTTGGAGGATCAGATGCAGCATCT
GTTCGCTGACCCAACCCCCCTGGGCAACTTTGGGGCCTACTCCCAAGCTG
ATCCAAACCAGTCAGAGGAAGAATAG