mRNA_D-mesarthrocarpus_Contig1002.4.2 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1002.4.2 vs. uniprot
Match: A0A6H5KST8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST8_9PHAE) HSP 1 Score: 526 bits (1356), Expect = 5.460e-152 Identity = 446/1158 (38.51%), Postives = 549/1158 (47.41%), Query Frame = 1 Query: 1507 GQQGVVARLEGEADTVSLYSSPEGGRGVAPSLATQAGIHDAWFRAGGVRGLLYAMARVVDELA---EGTDTNESNGQSRDSKEQLGLGLGGDHGGEDNPGVSLLGELVKIMAALLASGPVHREEFLKVHGFHMLSIVLQRLPNPKENLSGTVVAACLHLLDVVDALQELELIGAALQGLVLDFRLWSEAGGGTQEQLLVGVERVAS-----KRAPQLRLFLGVQLLLDILRVHICMVDLAAVKPNPGEREGGGGKLHCSESSGDGRPHQREGTVALRTAWCE---GRGQRQGQGEGGRRDEGSEATA--IEGCVDSCTRMLLAMLMQGLSESCDVEGEGAGAWAGEGAGPRAEVGPGGPRGSTSSXXXXXXXXXXXXXXXXXXXNQGASSQPXXXXXXXGEVGAV------------------------VACLLECQSPVLQRGLVGVLLKLRVSH--PRSLRRELLWCNFASEVAPALLTKKGYTSNVREGTLDLTLWLLQEAKLAGEERLLVLPPSKSPPLPMAASAATTAHA--SVRSPPGXXXXXXEKGTAASPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AVALAVTRGVWGPLPSASQWAAPPVGESIVRVALRGGSVATGD----GCNAPGGEGRDGGGXGGED-----------------RASLWLSVPFVAALLPGASPDTRQEAVTSLNIVLKSDPAARKGLLQQCEHMWADCLMELALCDREWTXXXXXXXXXXXXXXXXXXXXXXSYAPSIKSNGMGGEWESIVGFGTGAISAPVTEIRSLCEELALASVGFLAAEAVSSRPRGWTIFRPVLAALGRAAWVCIGPDAGGRAWRCKALCKLSTTVLQHVSRGTGQWTELTLDGLNKVILLIEERLFPDEGQPCPW----------------------GASGPGAGARDGVGAGAGVVTSVSFSGLVSTCSQGGNTFGGRGXXXXXXXXDAMAATVNPLVDCLVEITRGLRCILSTKPLPA-GDKVPAAAVAAXXXXRPPTGXXXXXXXXXXXXXXXXXXXXXXDDDGLRGRARTALWPSLRVLGRIPALREVGADLSRVIYREVFSSLQTLLSLTEVDPTVGKDATLSAFLGLQRALSACDQDLSRTGPSAT 4722
G G +ARLEG V YS G VAP AT+ G++DAWFRAGG R LLY ARVVDELA ++GQ RD E L G LLGEL++ +A LL+SGPVHREEFL+V DA QE+EL+GAALQG++LDFRLWS+AG Q LL GV VA+ +R QLR F+G QLLLD+LRVH+C D A P +R + S H +G+V R + G G R G +E CV +C RML AML LS+ DV+ + A G G RA G G RG +S S G GAV V CL ECQSP LQRG++GVLL LR LRR+LL F E AP LL+KKGY+++VR L L+LWLL E AG+ER L L S+ T H SV + P XXXX +++P VALAV++ WG +P + P+GE +V VAL GG V+ G A X RASLWLS+PF+AALLPGASP TRQ+A S+NI LK + AARK LL+ E WAD L+ELALC+RE PS + G G WES+ FG GA+S PV E SLCEELAL + G + A+++ RPRGWTI RP+LA+L RA +G D GR W+ ALCKLS+TVLQ V+RG+G+WTELTLDGLNK++LL+EERLFP + G G GA +G + V S G ++F G A +++ LV+C++EI RGLR +LS +PLPA G + P AAV XXXX X D GLR RA ALWP+LR LGR+P LR+VG +LSRV+Y EVF SLQ LLSL EV P GK ATL AFL L++ALS CD+DLSR PSA+
Sbjct: 7 GSGGDLARLEGPVKHVVAYS----GVHVAPGPATKGGVYDAWFRAGGTRALLYTAARVVDELAAVASEASAKGASGQVRDRAEVLA-----------REGRELLGELLRTVAVLLSSGPVHREEFLQV-----------------------------------DAFQEVELLGAALQGVLLDFRLWSDAGVEAQALLLEGVSSVAAFWQAERRVAQLRAFVGPQLLLDVLRVHVCTADRAP--PRAQKRPSTSAAPPAASPS-----HAADGSVIARPVTPKSKRGSGFRDGSSXXXXXXXXXXXXGEPLERCVGACMRMLHAMLRSELSD--DVQAASSFIEA-AGGGDRAPGGALGSRGMDASERAKYVRMSFLEEDFGDSFGLDGSGWKDGVLREAGVDGAVEDPGSEVTAAAAAAAGEADGVNAAVVCLQECQSPDLQRGVLGVLLGLRKDGLIKDFLRRKLLRSMFLWEAAPILLSKKGYSTDVRRDCLALSLWLLWETHAAGDERSLAL------------SSKTRRHRRPSVSAFPASGXXXXXXNASSAPDLAKALDAENLVLGEDGGRGQGAADGGDAASGRDVLAAVRGQYWSAHLMLARTVALAVSQEAWGTIPGLLSPSPAPIGEDVVEVALSGGQVSAATEETVGKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRASLWLSLPFLAALLPGASPSTRQQAAMSINIALKGNVAARKALLRLSESSWADALIELALCERELDDPFAAGATGAAEGAASGGSLKR---PSSRGGGGCG-WESVERFGDGAVSTPVGE-TSLCEELALDAAGCVVADSIVERPRGWTILRPLLASLDRAVVQRVGLDRSGREWQRVALCKLSSTVLQRVARGSGRWTELTLDGLNKLMLLVEERLFPGDELAAXXXXXXXXXXXXXXXXXXXXXXEAGGLGVAGGAEEG-------------NRPVLGSSGGQSSFDMEGSWGEDG---TAAGSLSHLVECMLEIVRGLRSMLSNEPLPATGHRAPVAAVXXXXXXX-------------------------XGDVGLRTRACNALWPALRALGRVPVLRDVGTELSRVVYHEVFLSLQVLLSLPEVTPAAGKSATLEAFLSLRKALSVCDEDLSRPDPSAS 1046
BLAST of mRNA_D-mesarthrocarpus_Contig1002.4.2 vs. uniprot
Match: A0A6H5KTN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN6_9PHAE) HSP 1 Score: 282 bits (721), Expect = 3.170e-79 Identity = 198/520 (38.08%), Postives = 257/520 (49.42%), Query Frame = 1 Query: 79 DCATLLGLSSEKAPKTLVHDLEVIGAARPAEQEHTFDPLQDLLDSLVAWFLDESRSNRATDGDDLALCIRVVRWI-----------------------------------------------SRHTGSRERLVT--RPEGR--LEPLLVQAASNVGAGVEGITEALRIISGTWQGDGLRKLRFRQAFAEAIREHLDRVPVDVAFRFGRREGGAGIAADGGGGGKIKARLALPATLDWGAFRGYTVTMWLRPDPTADG-DSFLLFCFRNSAGVGVEAAL-GPTRAEEVEAGQGGTKEIGGRSEGEEWDLSFTREIKITSYHRSNLERGSSVKCRVGSLCGDVAENGAGXXXXXXXXXXXXGGWRLVTVSHGLPYVRRSGRLQVAVDAKVVLEAELPYPTATGQASGDVMLRSSFFDGMVGCAGAVALYEEELGLSALQTLFGAGPNHLGGTQPLPVAQPNXXXXXXPDSSGFHTQVLSGEGAKAAAEARILWAYLPQMCQDKVCHQWTPRGSTRLHKVVIS 1479
+ + + L + P +L+ L + E E + L ++DSLV WFL ESR+ R DGDDL LC+R W+ S G R+ T R +G L+ LL A +GAGV+GI ++L +++G G + +R R+AFA A+R HL V +D FRF + AG + GG RLALP L W +FR YTVTMW+R DP G D+ LF FRN+ GVGVEA L G A GR REI +TS+ R + S +CR G V G G GWR V VSHG PYV+RSGRL+V+VD VVL+ EL YP ATGQ S D M R F +G VG AG++ALY +EL + A++ L AGPNHLG QPLPVA +S +L +GAKAAA AR++ A+LP+MC D VC W P G+ LH VV++
Sbjct: 12 ELSLVAALQASSMPASLLQALRTLDQELGEETER--EALDGVVDSLVEWFLHESRAPRTADGDDLGLCLRAACWLAPRFANLSSCSDPRPQAVDETADELNNGSQATTTTTATPETPAPGEASEDLGERQGHTTAARDDGEEPLQLLLELGAGRLGAGVDGIRKSLSLMAGDL---GPKSMRVRRAFASALRAHLGTVRLDSVFRFDAPK--AGPPSGNGGVVSSPGRLALPPMLSWASFRKYTVTMWVRLDPAYSGADAATLFRFRNAEGVGVEATLSGAAAAPXXXXXXXXXXXXXGR-----------REIVVTSFQRKSF----SARCRFGPPAEAVHLGGGGVGDGGRQD-----GWRFVAVSHGQPYVKRSGRLRVSVDGGVVLDTELQYPPATGQGSKDPMSRCCFCEGFVGEAGSLALYGDELDMGAVRALLAAGPNHLGAAQPLPVA-----------TSDTLPPLLHTQGAKAAASARLVAAFLPRMCTDGVCPAWRPGGTVDLHNVVMA 493
BLAST of mRNA_D-mesarthrocarpus_Contig1002.4.2 vs. uniprot
Match: D8LFY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY6_ECTSI) HSP 1 Score: 186 bits (471), Expect = 1.900e-47 Identity = 147/454 (32.38%), Postives = 192/454 (42.29%), Query Frame = 1 Query: 79 DCATLLGLSSEKAPKTLVHDLEVIGAARPAEQEHTFDPLQDLLDSLVAWFLDESRSNRATDGDDLALCIRVVRWIS-----------------------------------------------RHTGSRERLVT--RPEGR--LEPLLVQAASNVGAGVEGITEALRIISGTWQGDGLRKLRFRQAFAEAIREHLDRVPVDVAFRFGRREGGAGIAADGGGGGKIKARLALPATLDWGAFRGYTVTMWLRPDPTADGDSFLLFCFRNSAGVGVEAALGPTRAEEVEAGQGGTKEIGGRSEGEEWDLSFTREIKITSYHRSNLERGSSVKCRVGSLCGDVAENGAGXXXXXXXXXXXXGGWRLVTVSHGLPYVRRSGRLQVAVDAKVVLEAELPYPTATGQASGDVMLRSSFFDGMVGCAGAVALYEEELGLSALQTLFGAGPNHLGGTQPLPVA 1287
+ + + L + P +L+ L + E E + L ++DSLV WFL ESR+ R DGDDL LC+R W++ G R+ T R +G L+ LL A +GAGV+GI +L +++G G LR +R R+AFA A+R HL V VD FRF + AG + GG RLALP L W +FR REI +TS+ R + S +C+ G V G G GWR V VSHG PYV+RSGRL+V+VD VVL+ EL YP ATGQ S D M R F +G VG AG++ALY +EL + A++ L AGPNHLG QPLPVA
Sbjct: 12 ELSLVAALQASSMPASLLQALRTLDQELGEETER--EALDGVVDSLVEWFLHESRAPRTADGDDLGLCLRAACWLAPRFADLSSSGSPRPQAADETAAALNDGSQAATATTATPETPAPGEAREDLGERQGQTTAARDDGEEPLQLLLELGAGRLGAGVDGIHRSLSLMAGALLG--LRSMRVRRAFASALRAHLGTVRVDSVFRFDAPK--AGPPSGNGGVVSSPGRLALPPMLSWASFR-------------------------------------------------------------------KREIVVTSFQRKSF----SARCKFGPPAEAVHLGGGGVGDGGRQD-----GWRFVAVSHGQPYVKRSGRLRVSVDGGVVLDTELHYPPATGQGSKDPMSRCCFCEGFVGEAGSLALYGDELDMGAVRALLAAGPNHLGAAQPLPVA 383
BLAST of mRNA_D-mesarthrocarpus_Contig1002.4.2 vs. uniprot
Match: D8LFY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY7_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 8.790e-8 Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1 Query: 1342 VLSGEGAKAAAEARILWAYLPQMCQDKVCHQWTPRGSTRLHKVVIS 1479
+LSG+GAKAAA AR++ A+LP+MC D VC W P G+ LH VV++
Sbjct: 1 MLSGQGAKAAASARLVAAFLPRMCTDGVCPAWRPGGTVDLHNVVMA 46 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1002.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig1002.4.2 >prot_D-mesarthrocarpus_Contig1002.4.2 ID=prot_D-mesarthrocarpus_Contig1002.4.2|Name=mRNA_D-mesarthrocarpus_Contig1002.4.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=1556bp MALRQHNDCATLLGLSSEKAPKTLVHDLEVIGAARPAEQEHTFDPLQDLLback to top mRNA from alignment at D-mesarthrocarpus_Contig1002:7734..25130+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig1002.4.2 ID=mRNA_D-mesarthrocarpus_Contig1002.4.2|Name=mRNA_D-mesarthrocarpus_Contig1002.4.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=17397bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1002:7734..25130+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1002:7734..25130+ >mRNA_D-mesarthrocarpus_Contig1002.4.2 ID=mRNA_D-mesarthrocarpus_Contig1002.4.2|Name=mRNA_D-mesarthrocarpus_Contig1002.4.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=4668bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1002:7734..25130+ (Discosporangium mesarthrocarpum MT17_79)back to top |