mRNA_D-mesarthrocarpus_Contig10014.3.2 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10014.3.2 vs. uniprot
Match: D7FNH6_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH6_ECTSI) HSP 1 Score: 178 bits (451), Expect = 2.490e-48 Identity = 110/240 (45.83%), Postives = 150/240 (62.50%), Query Frame = 3 Query: 120 LDSMRELDEAAAPNAIAQSVEVDERKSLARRIRTCLALILFLHITGASVIGQVYPKVVLDFYRGDDAGASTFNGWLTGLVSMLQFVGVPGLSAASDSIGRRTVMALALVMHSSSALLLAVNPSSILLVTVCQVASSASAVLLPVSQAVIADLARI-TGGGGSELTHGLGAVGAVFGLAIFVGPLLGGALSSFHAQAACLICATLCFLALLCLLWYGWEETARKPGLRRLACGAEAEAGAG 836 LD A+ A A SV K R+R L++ LFLHI G ++I QVYPKVVL+ + D+ AS F GWLT + ++Q + +P L ASD IGRR ++A AL + + S+ L + PSSI +V+VCQV S + +LP+SQAV+ DL+ GG E+THGLG +GA FGLA+ VGP+LGG+L+ HA AC + A++ L +L L ++GWEETA P + A GA A A AG Sbjct: 20 LDGTAATTTASDGGAAATSVPRGLTKG--DRVRRRLSVCLFLHIVGVAIISQVYPKVVLEHFDHDNGEASRFTGWLTLVSCIVQLIAIPTLCGASDVIGRRAILAGALALTAVSSFSLGLAPSSIAVVSVCQVVSGVANAILPISQAVVIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSVLGVLSLKFFGWEETA--PAATQGAGGATANASAG 255
BLAST of mRNA_D-mesarthrocarpus_Contig10014.3.2 vs. uniprot
Match: A0A6H5L7V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V6_9PHAE) HSP 1 Score: 137 bits (346), Expect = 5.090e-35 Identity = 81/198 (40.91%), Postives = 119/198 (60.10%), Query Frame = 3 Query: 186 DERKSLARRIRTCLALILFLHITGASVIGQVYPKVVLDFYRGDDAGASTFNGWLTGLVSMLQFVGVPGLSAASDSIGRRTVMALALVMHSSSALLLAVNPSSILLVTVCQVASSASAVLLPVSQAVIADLARITGGGGSELTHGLGAVGAVFGLAIFVGPLLGGALSSFHAQAACLICATLCFLALLCLLWYGWEETA 779 D ++ R++ C+ L + GAS++ QVYPK++L GDD AS + GWL VS++Q + VP +S +SD +GR+ V+ A V+H+SS L LA S++ TVC++A+S V+LPVSQA++ DL+ G G THGLG L G ++GG+L+ H AACL+ A +LL L+ +GW ETA Sbjct: 27 DAAAAVHRKLTACILL----YTIGASMMTQVYPKIILLSSGGDDGEASKYRGWLAAGVSVIQLLFVPAISGSSDVVGRKVVVCFAQVLHASSVLALAAMADSLVWATVCRLATSVCIVILPVSQAIMIDLSPDRGKGA---THGLGIAFGACALGFSAGDIIGGSLAEHHRGAACLVSAAFATASLLSLMLFGWRETA 217
BLAST of mRNA_D-mesarthrocarpus_Contig10014.3.2 vs. uniprot
Match: D7FNH7_ECTSI (Tetracycline-efflux transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH7_ECTSI) HSP 1 Score: 132 bits (332), Expect = 3.010e-31 Identity = 79/191 (41.36%), Postives = 112/191 (58.64%), Query Frame = 3 Query: 207 RRIRTCLALILFLHITGASVIGQVYPKVVLDFYRGDDAGASTFNGWLTGLVSMLQFVGVPGLSAASDSIGRRTVMALALVMHSSSALLLAVNPSSILLVTVCQVASSASAVLLPVSQAVIADLARITGGGGSELTHGLGAVGAVFGLAIFVGPLLGGALSSFHAQAACLICATLCFLALLCLLWYGWEETA 779 R++ C+ L + GAS++ QVYPK++L GDD AS + GWL VS++Q + VP +S SD +GR+ V+ A V+H+ S L LA S+ TVC++A+S V+LPVSQA++ DL+ G G THGLG L G ++GG+L+ H AACL+ A +LL L +GW ETA Sbjct: 74 RKLTACILL----YTIGASMMTQVYPKIILLSCGGDDGEASKYRGWLAAGVSVIQLIFVPAISGWSDVVGRKAVVCFAQVLHAGSVLALAAMADSLAWATVCRLATSVCIVILPVSQAIMIDLSPDRGKGA---THGLGIAFGASALGFSAGDIIGGSLTEHHRGAACLVSAAFSAASLLSLALFGWRETA 257
BLAST of mRNA_D-mesarthrocarpus_Contig10014.3.2 vs. uniprot
Match: A0A835YXD6_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXD6_9STRA) HSP 1 Score: 110 bits (276), Expect = 9.840e-24 Identity = 73/186 (39.25%), Postives = 102/186 (54.84%), Query Frame = 3 Query: 261 SVIGQVYPKVVLDFYRGDDAGASTFNGWLTGLVSMLQFVGVPGLSAASDSIGRRTVMALALVMHSSSALLLAVNPSSILLVTVCQVASSASAVLLPVSQAVIADLARITGGGGSELTHGLGAVGAVFGLAIFVGPLLGGALSSFHAQAACLICATLCFLA-----------LLCLLW---YGWEET 776 ++ QVYPKVVL +Y GDD ++F GW++G SMLQFV P L+A+ D GRR ++ A + + +P++I L V + V++PVSQA+I+D+ R G + HG G + FGL + +GPLLGG L++ H AAC A LA LL LL +GWEET Sbjct: 202 AIQAQVYPKVVLSYYGGDDGKTASFLGWVSGGSSMLQFVLSPSLTASCDVRGRRGLLLAAAGAQALICFIWGFSPNNIGLAAAVAVITGMCGVVIPVSQAIISDVTRHDG---AAAAHGFGVIAGTFGLGLCIGPLLGGWLTNVHRPAACFTAAGAALLAHCWWRWWAGTALLALLVATVWGWEET 384
BLAST of mRNA_D-mesarthrocarpus_Contig10014.3.2 vs. uniprot
Match: A0A3M1ENR2_9CHLR (MFS transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1ENR2_9CHLR) HSP 1 Score: 66.2 bits (160), Expect = 1.130e-8 Identity = 53/165 (32.12%), Postives = 86/165 (52.12%), Query Frame = 3 Query: 210 RIRTCLALILFLHIT-GA---SVIGQVYPKVVLDFYRGDDAGASTFNGWLTGLVSMLQFVGVPGLSAASDSIGRRTVMALALVMHSSSALLLAVNPSSILLVTVCQVASSASAVLLPVSQAVIADLARITGGGGSELTHGLGAVGAVFGLAIFVGPLLGGALSSF 692 R R + L+LF+ + GA +++G P + F D + A W+ + + +G P ++ SD GRR++ AL + + S+ +LL+A++PS +L+ V + + PV+ AVI D G + LG +GAVFGLA +GP+LGG L F Sbjct: 5 RTRNRILLVLFVGVLMGALDIAIVGPALPAIQTTFGANDRSIA-----WVFTIYVLFNLIGTPLMAKLSDDFGRRSIYALDVALFSAGSLLVALSPSFGVLLVGRAVQGFGAGGIFPVASAVIGDTFPPEKRGSA-----LGLIGAVFGLAFIIGPILGGVLLIF 159
BLAST of mRNA_D-mesarthrocarpus_Contig10014.3.2 vs. uniprot
Match: A0A4D9CSS8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSS8_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.690e-8 Identity = 52/170 (30.59%), Postives = 91/170 (53.53%), Query Frame = 3 Query: 195 KSLARRIRTCLALILFLHITGASVIGQVYPKVVLDFYRGDDAGASTFNGWLTGLVSMLQFVGVPGLSAASDSIGRRTVMALALVMHSSSALLLAVNPS--SILLVTVCQVASSASAVLLPVSQAVIADLARITGGGGS-ELTHGLGAVGAVFGLAIFVGPLLGGALSSFH 695 K L R + C AL F HI+ V+ + +++L+ + + + + F G G+ +QF P L SDS+GRR ++ L+L++H +S +++A+ P+ S+L+ + + AS V L + A++ADL G G EL G +G GL++ +GP +G L + Sbjct: 64 KQLVRTKKLCRALGFFYHIS-FGVLFTTFTELLLNDFGNNYSQTAAFLGVCAGVERGVQFFSSPVLGNLSDSVGRRPILLLSLLLHFASLMVVAILPTRHSVLIYFLI---NGASNVTLGMINAIVADLCSAQGKTGEGELAQQYGRLGMAIGLSMILGPAIGPVLQKVN 229
BLAST of mRNA_D-mesarthrocarpus_Contig10014.3.2 vs. uniprot
Match: A0A523ME07_9GAMM (MFS transporter n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523ME07_9GAMM) HSP 1 Score: 64.7 bits (156), Expect = 3.650e-8 Identity = 47/140 (33.57%), Postives = 75/140 (53.57%), Query Frame = 3 Query: 264 VIGQVYPKVVLDFYRGDDAGASTFNGWLTGLVSMLQFVGVPGLSAASDSIGRRTVMALALVMHSSSALLLAVNPSSILLVTVCQVASSASAVLLPVSQAVIADLARITGGGGSELTHGLGAVGAVFGLAIFVGPLLGGAL 683 ++G P + Y D+ G S W+ G+ + Q VG P ++ SD GRR V + + ++++LL+A++P+ +L+T + + +LPV+ AVI D G LG +GAVFG+A +GPLLGG L Sbjct: 31 IVGPALPAIQTT-YGADERGLS----WVFGIYILFQLVGAPVIAKFSDRQGRRAVYIACVAVFAAASLLVAMSPTFAVLLTGRAIQGFCAGGILPVAIAVIGDTFPAERRG-----RALGLIGAVFGIAFLLGPLLGGIL 160
BLAST of mRNA_D-mesarthrocarpus_Contig10014.3.2 vs. uniprot
Match: A0A2E5V9Z7_9GAMM (MFS transporter n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E5V9Z7_9GAMM) HSP 1 Score: 63.9 bits (154), Expect = 6.420e-8 Identity = 51/160 (31.87%), Postives = 78/160 (48.75%), Query Frame = 3 Query: 213 IRTCLALILFLHITGASVIGQVYPKVVLDFYRGDDAGASTFNGWLTGLVSMLQFVGVPGLSAASDSIGRRTVMALALVMHSSSALLLAVNPSSILLVTVCQVASSASAVLLPVSQAVIADLARITGGGGSELTHGLGAVGAVFGLAIFVGPLLGGALSSF 692 I T L L + + ++IG P + F D+A + W+ G+ + Q +G P +S SD GRR + S+L++A + S +L+ + ++ +LPVS A+IAD G LG +GAVFGLA +GP+LG L SF Sbjct: 9 ITTILFLAVLMAALDIAIIGPALPAIQQSFLVDDNALS-----WVFGIYILFQLLGAPIISKLSDRYGRRKTFVYCVAFFGFSSLIVAASGSFYMLLLGRSLQGFSAGGILPVSSAIIADSFPEKHRG-----KALGLIGAVFGLAFLLGPILGALLLSF 158
BLAST of mRNA_D-mesarthrocarpus_Contig10014.3.2 vs. uniprot
Match: UPI001F0E2D0A (MFS transporter n=1 Tax=Candidatus Chloroploca sp. Khr17 TaxID=2496869 RepID=UPI001F0E2D0A) HSP 1 Score: 63.9 bits (154), Expect = 6.610e-8 Identity = 52/170 (30.59%), Postives = 87/170 (51.18%), Query Frame = 3 Query: 195 KSLARRIRTCLALILFLHITGAS----VIGQVYPKVVLDFYRGDDAGASTFNGWLTGLVSMLQFVGVPGLSAASDSIGRRTVMALALVMHSSSALLLAVNPSSILLVTVCQVASSASAVLLPVSQAVIADLARITGGGGSELTHGLGAVGAVFGLAIFVGPLLGGALSSF 692 K A+ RT + +LF+ + A+ ++G P + DF + A A W+ L + VG P ++A SD +GRR + L++ + +L++A+ PS +L+ V ++ + PV+ AV+ D G + LG +GAVFG+A +GP+LGG L F Sbjct: 3 KETAQPPRTYVLGLLFVGVLMAALDIAIVGPALPAIQRDFQVSEQALA-----WVFSLYVLGNLVGTPAIAALSDHLGRRRIYTLSIAGFALGSLIVALAPSFAVLLIGRLVQGISAGGIFPVASAVVGDTFPPEKRGSA-----LGLLGAVFGIAFLIGPILGGVLLLF 162
BLAST of mRNA_D-mesarthrocarpus_Contig10014.3.2 vs. uniprot
Match: A0A3M1S0I8_9GAMM (MFS transporter n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1S0I8_9GAMM) HSP 1 Score: 63.2 bits (152), Expect = 1.190e-7 Identity = 56/163 (34.36%), Postives = 82/163 (50.31%), Query Frame = 3 Query: 204 ARRIRTCLALILFLHITGA---SVIGQVYPKVVLDFYRGDDAGASTFNGWLTGLVSMLQFVGVPGLSAASDSIGRRTVMALALVMHSSSALLLAVNPSSILLVTVCQVASSASAVLLPVSQAVIADLARITGGGGSELTHGLGAVGAVFGLAIFVGPLLGGAL 683 A++ R LAL+ + GA ++IG P + DF D+ S WL + + Q +G P L+ SD GRR + AL++ + +LLL + P L+ + + + PV+ AVI D GG+ LG +GAVFGLA VGP+LGG L Sbjct: 3 AQQARKVLALLFVGVLMGALDLAIIGPALPAIQADFDM-DNRQLS----WLFNIYVLTQLIGTPLLAKLSDRYGRRLIYALSVGGFALGSLLLVIAPGIGFLMLARAIQGFGAGGIFPVAAAVIGDTFPPEKRGGA-----LGLIGAVFGLAFLVGPVLGGIL 155 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10014.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10014.3.2 >prot_D-mesarthrocarpus_Contig10014.3.2 ID=prot_D-mesarthrocarpus_Contig10014.3.2|Name=mRNA_D-mesarthrocarpus_Contig10014.3.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=236bp MRELDEAAAPNAIAQSVEVDERKSLARRIRTCLALILFLHITGASVIGQVback to top mRNA from alignment at D-mesarthrocarpus_Contig10014:2521..4303+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10014.3.2 ID=mRNA_D-mesarthrocarpus_Contig10014.3.2|Name=mRNA_D-mesarthrocarpus_Contig10014.3.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1783bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10014:2521..4303+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10014:2521..4303+ >mRNA_D-mesarthrocarpus_Contig10014.3.2 ID=mRNA_D-mesarthrocarpus_Contig10014.3.2|Name=mRNA_D-mesarthrocarpus_Contig10014.3.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=708bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10014:2521..4303+ (Discosporangium mesarthrocarpum MT17_79)back to top |