mRNA_D-mesarthrocarpus_Contig10009.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match: D8LB97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 6.670e-17 Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 1 Query: 4 AGGQQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDV 120 AG QQT++RVIVTGLPPSASWQDLKDHMRKAG+PTYTDV Sbjct: 110 AGFQQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDV 148
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match: A0A835YQ88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ88_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 5.920e-16 Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1 Query: 1 MAGGQQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDV 120 M GG+QT+ RVIVTGLPPSASWQDLKDHMRKAGD YTDV Sbjct: 95 MGGGRQTEWRVIVTGLPPSASWQDLKDHMRKAGDVVYTDV 134
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match: A0A836CC30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC30_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.010e-15 Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1 Query: 1 MAGGQQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDV 120 M GG+QT+ RVIVTGLPPSASWQDLKDHMRKAGD YTDV Sbjct: 114 MGGGRQTEWRVIVTGLPPSASWQDLKDHMRKAGDVVYTDV 153
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match: A0A2A6CR05_PRIPA (Rsp-3 n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=A0A2A6CR05_PRIPA) HSP 1 Score: 72.8 bits (177), Expect = 3.900e-14 Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1 Query: 7 GGQQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDV 120 GG++T HRVIVTGLPP+ SWQDLKDHMR+AGD YTDV Sbjct: 123 GGRRTSHRVIVTGLPPTGSWQDLKDHMREAGDVCYTDV 160
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match: D8LPT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT5_ECTSI) HSP 1 Score: 70.5 bits (171), Expect = 3.980e-13 Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1 Query: 7 GGQQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDV 120 GG+QT++R +VTGLP SASWQDLKDHMRKAGD Y DV Sbjct: 188 GGRQTEYRAVVTGLPQSASWQDLKDHMRKAGDVNYADV 225
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match: A0A821HWE8_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821HWE8_9NEOB) HSP 1 Score: 66.2 bits (160), Expect = 1.020e-12 Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1 Query: 16 QTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDV 120 QT++RV+V+GLPPS SWQDLKDHMRKAGD Y DV Sbjct: 68 QTEYRVLVSGLPPSGSWQDLKDHMRKAGDVCYADV 102
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match: A0A0N5AVR9_9BILA (Uncharacterized protein n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5AVR9_9BILA) HSP 1 Score: 68.2 bits (165), Expect = 1.440e-12 Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 1 Query: 7 GGQQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDVV 123 G ++T++RVI+TGLPPS SWQDLKDHMR+AGD Y+DV Sbjct: 112 GSRRTNYRVIITGLPPSGSWQDLKDHMREAGDVCYSDVT 150
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match: A0A7S0RPW5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RPW5_9CHLO) HSP 1 Score: 67.8 bits (164), Expect = 1.540e-12 Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 Query: 13 QQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDVV 123 ++TD+RVIVTGLP SASWQDLKDHMRKAGD T+T V+ Sbjct: 110 RRTDYRVIVTGLPLSASWQDLKDHMRKAGDVTFTQVM 146
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match: F1KVJ6_ASCSU (Serine/arginine-rich splicing factor 1 n=2 Tax=Ascaris suum TaxID=6253 RepID=F1KVJ6_ASCSU) HSP 1 Score: 67.4 bits (163), Expect = 2.640e-12 Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 Query: 4 AGGQQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDVV 123 +GG++T++RVIVTGLP S SWQDLKDHMR+AGD Y D+ Sbjct: 115 SGGRRTNYRVIVTGLPTSGSWQDLKDHMREAGDVCYADIT 154
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match: UPI0009A265F1 (serine/arginine-rich splicing factor 1-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A265F1) HSP 1 Score: 66.2 bits (160), Expect = 3.340e-12 Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 Query: 13 QQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDVVG 126 +++D RVIV+GLPPS SWQDLKDHMR+AGD Y DV+G Sbjct: 110 RRSDFRVIVSGLPPSGSWQDLKDHMREAGDVCYADVLG 147 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10009.3.1 >prot_D-mesarthrocarpus_Contig10009.3.1 ID=prot_D-mesarthrocarpus_Contig10009.3.1|Name=mRNA_D-mesarthrocarpus_Contig10009.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=48bp MAGGQQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDVVGLNSWG*back to top mRNA from alignment at D-mesarthrocarpus_Contig10009:4058..4201+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10009.3.1 ID=mRNA_D-mesarthrocarpus_Contig10009.3.1|Name=mRNA_D-mesarthrocarpus_Contig10009.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=144bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10009:4058..4201+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10009:4058..4201+ >mRNA_D-mesarthrocarpus_Contig10009.3.1 ID=mRNA_D-mesarthrocarpus_Contig10009.3.1|Name=mRNA_D-mesarthrocarpus_Contig10009.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=144bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10009:4058..4201+ (Discosporangium mesarthrocarpum MT17_79)back to top |