mRNA_D-mesarthrocarpus_Contig10003.1.2 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match: D7G5S1_ECTSI (Putaive LSm10 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S1_ECTSI) HSP 1 Score: 110 bits (275), Expect = 8.820e-28 Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = 3 Query: 159 RAKRVPQLEKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMR--KKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVSTV 503
R K+ LEKTLAIL+Q MRG+ +VVEMKND EI+G+LEETD++MK + L S + P+ +M ++T G V+ M++ VQGKM+RYVHIPD VDAI L KH+ T+
Sbjct: 12 RQKKTSPLEKTLAILIQSMRGNKIVVEMKNDAEISGILEETDRNMKAATVWLAAYGLTCSRAGPAPSLSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTM 128
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match: A0A6H5JYY5_9PHAE (Sm domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY5_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 4.840e-13 Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 3 Query: 240 MKNDVEITGVLEETDKDMKL-VIDFFLCIRLLLSASLPSDCQTMRKKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVSTV 503
MKND EI+G+LEETD++M L ++D ++T G V+ M++ VQGKM+RYVHIPD VDAI L KH+ T+
Sbjct: 1 MKNDAEISGILEETDRNMNLSMVDV--------------------RQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTM 69
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match: UPI000E456FA5 (U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=UPI000E456FA5) HSP 1 Score: 58.2 bits (139), Expect = 1.100e-7 Identity = 33/108 (30.56%), Postives = 59/108 (54.63%), Query Frame = 3 Query: 183 EKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMRKKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVSTVH 506
E ++ +L+QG++G V+++N E T + + +D F+ IRL + + + W +G + ++ FV G+ VRYVHIPD VD +KT+H ++ +H
Sbjct: 29 ENSMVLLLQGLQGEVTTVDLRN--------ESTAQGRVVNVDAFMNIRL----------EEVLYRDW-RGNLTQLQDLFVTGRNVRYVHIPDHVDIMKTMHNQLAKIH 117
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match: A0A131X8Y5_9ACAR (Putative small nuclear ribonucleoprotein smd1 n=1 Tax=Hyalomma excavatum TaxID=257692 RepID=A0A131X8Y5_9ACAR) HSP 1 Score: 55.8 bits (133), Expect = 7.800e-7 Identity = 31/101 (30.69%), Postives = 51/101 (50.50%), Query Frame = 3 Query: 180 LEKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMRKKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTL 482
+ K+L +++Q +RG +E++N++ I G +E D M + + SD + G +T FVQG+ VRYVHIPDD+D + +L
Sbjct: 10 ISKSLVLMLQSLRGRQTTIELRNELSIYGTVENVDAFMNVDL---------------SDATVVGPN-----GEETYASFFVQGRQVRYVHIPDDIDMVASL 90
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match: A0A6I9PRP2_9TELE (U7 snRNA-associated Sm-like protein LSm10 n=3 Tax=Notothenioidei TaxID=8205 RepID=A0A6I9PRP2_9TELE) HSP 1 Score: 55.8 bits (133), Expect = 8.260e-7 Identity = 32/108 (29.63%), Postives = 57/108 (52.78%), Query Frame = 3 Query: 183 EKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMRKKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVSTVH 506
E ++ +L+QG++G VE++N+ G + +D F+ +RL D T + + + +K M F+ G+ +RYVHIPD VD +KT+ H++ +H
Sbjct: 30 ENSMVVLLQGLQGEVTTVELRNESSARGRVVN--------VDAFMNVRL--------DDVTYKDRRGKSSQLKDM---FITGRNIRYVHIPDHVDIMKTIEGHLAKIH 118
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match: A0A7I4A3P4_PHYPA (Sm domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4A3P4_PHYPA) HSP 1 Score: 57.0 bits (136), Expect = 8.850e-7 Identity = 32/107 (29.91%), Postives = 58/107 (54.21%), Query Frame = 3 Query: 183 EKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMRKKTWE--QGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVS 497
E+TL ++Q + G ++VE++ND+ I G+L++ D M ++I + T E +G K + + F++G +R+VHIPD+VD +K + + VS
Sbjct: 81 ERTLVCVIQALMGLELLVELRNDLSIRGILDDCDNAMNVII---------------------KDATVEDVEGVQKQLPLVFLRGSNIRFVHIPDNVDIMKLVEERVS 166
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match: UPI00140222DA (U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI00140222DA) HSP 1 Score: 55.1 bits (131), Expect = 1.140e-6 Identity = 34/108 (31.48%), Postives = 55/108 (50.93%), Query Frame = 3 Query: 183 EKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMRKKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVSTVH 506
E +L IL+QG+ GH VE++++ + G + +D F+ +RL S L +D G ++ FV G+ VRYVHIPD++ I T+H + +H
Sbjct: 14 ENSLIILLQGIHGHVTTVELRDESSVRGRIVN--------VDAFMNVRL--SEVLYTD---------RAGKALQLDDFFVTGRNVRYVHIPDEISIIDTIHSQLQKIH 102
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match: A0A4W6CCR8_LATCA (Organic solute carrier partner 1a n=2 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6CCR8_LATCA) HSP 1 Score: 55.1 bits (131), Expect = 1.220e-6 Identity = 30/108 (27.78%), Postives = 58/108 (53.70%), Query Frame = 3 Query: 183 EKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMRKKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVSTVH 506
E ++ +L+QG++G V+++N E T + + +D F+ +RL + + + W +G V ++ F+ G+ +RYVHIPD VD +KT+ ++ +H
Sbjct: 16 ENSMVVLLQGLQGEVTTVDLRN--------ESTARGRVVNVDAFMNVRL----------EDVLYRDW-RGQVTRLQDLFITGRNIRYVHIPDHVDIMKTIQSQLAKIH 104
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match: A0A8C4DJ85_DICLA (Organic solute carrier partner 1a n=2 Tax=Moronidae TaxID=42148 RepID=A0A8C4DJ85_DICLA) HSP 1 Score: 54.7 bits (130), Expect = 1.410e-6 Identity = 33/108 (30.56%), Postives = 58/108 (53.70%), Query Frame = 3 Query: 183 EKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMRKKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVSTVH 506
E ++ +L+QG++G V++KN E T + + +D F+ IRL D R + +G + ++ F+ G+ VRYVHIPD+VD +KT+ ++ +H
Sbjct: 7 ENSMVVLLQGLQGQVTTVDLKN--------ESTARGRVVNVDAFMNIRL--------DNVLYRDR---RGQLTQLQDLFITGRNVRYVHIPDNVDIMKTIQSQLARIH 95
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match: UPI001B3A82A0 (U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Toxotes jaculatrix TaxID=941984 RepID=UPI001B3A82A0) HSP 1 Score: 55.1 bits (131), Expect = 1.570e-6 Identity = 30/108 (27.78%), Postives = 58/108 (53.70%), Query Frame = 3 Query: 183 EKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMRKKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVSTVH 506
E ++ +L+QG++G V+M+N E T + + +D F+ IR+ + + + W +G + ++ F+ G+ VRY+HIPD VD +KT+ ++ +H
Sbjct: 29 ENSMVVLLQGLQGEVTTVDMRN--------ESTARGRVVSVDAFMNIRM----------EEVLYRDW-RGQLTQLQDMFITGRNVRYIHIPDHVDIMKTIQSQLAKIH 117 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10003.1.2 >prot_D-mesarthrocarpus_Contig10003.1.2 ID=prot_D-mesarthrocarpus_Contig10003.1.2|Name=mRNA_D-mesarthrocarpus_Contig10003.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=167bp MSEERLPLRPARNSPLPPLAEEREGSGKGTETSTGERIERTKRRRAKRVPback to top mRNA from alignment at D-mesarthrocarpus_Contig10003:345..3119- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10003.1.2 ID=mRNA_D-mesarthrocarpus_Contig10003.1.2|Name=mRNA_D-mesarthrocarpus_Contig10003.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2775bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10003:345..3119- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10003:345..3119- >mRNA_D-mesarthrocarpus_Contig10003.1.2 ID=mRNA_D-mesarthrocarpus_Contig10003.1.2|Name=mRNA_D-mesarthrocarpus_Contig10003.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=501bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10003:345..3119- (Discosporangium mesarthrocarpum MT17_79)back to top |