mRNA_D-dichotoma_M_contig998.20575.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig998.20575.1
Unique NamemRNA_D-dichotoma_M_contig998.20575.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig998.20575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig998contigD-dichotoma_M_contig998:175986..176476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size493
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931269.0500581-CDS-D-dichotoma_M_contig998:175985..1762941622931269.0500581-CDS-D-dichotoma_M_contig998:175985..176294Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig998 175986..176294 +
1690799695.4355469-CDS-D-dichotoma_M_contig998:175985..1762941690799695.4355469-CDS-D-dichotoma_M_contig998:175985..176294Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig998 175986..176294 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931269.070379-UTR-D-dichotoma_M_contig998:176294..1764761622931269.070379-UTR-D-dichotoma_M_contig998:176294..176476Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig998 176295..176476 +
1690799695.4491434-UTR-D-dichotoma_M_contig998:176294..1764761690799695.4491434-UTR-D-dichotoma_M_contig998:176294..176476Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig998 176295..176476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig998.20575.1prot_D-dichotoma_M_contig998.20575.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig998 175986..176294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig998.20575.1

>prot_D-dichotoma_M_contig998.20575.1 ID=prot_D-dichotoma_M_contig998.20575.1|Name=mRNA_D-dichotoma_M_contig998.20575.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=103bp
GKLGINRYLRASKFKSKGGWSITRKASNETREAGKEKPKNSKTTAKLEHN
SQGGRVINSSTRLVTPTKKKRGIRCNGIVDQLGSIRSVPGTFGNERSVGL
LW*
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mRNA from alignment at D-dichotoma_M_contig998:175986..176476+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig998.20575.1 ID=mRNA_D-dichotoma_M_contig998.20575.1|Name=mRNA_D-dichotoma_M_contig998.20575.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=491bp|location=Sequence derived from alignment at D-dichotoma_M_contig998:175986..176476+ (Dictyota dichotoma ODC1387m male)
GGGAAACTAGGTATAAATAGGTATCTACGTGCAAGTAAGTTCAAAAGCAA
AGGGGGTTGGTCTATCACAAGAAAAGCAAGCAACGAAACCAGGGAAGCGG
GGAAGGAGAAACCGAAGAACAGTAAGACAACCGCAAAACTCGAACACAAT
AGTCAGGGAGGGAGGGTCATCAACAGCTCCACCAGGCTCGTGACACCAAC
TAAAAAGAAACGAGGCATAAGGTGCAATGGTATCGTAGATCAGCTTGGAT
CCATCCGCAGTGTCCCTGGGACTTTTGGGAACGAACGCTCCGTAGGTCTA
TTGTGGTAGAAAATAGTCTCAGGCGAGTCAAGTGAAGAATGCACCTTCCT
GGGCTCTAAACACGGACCACGATCCTCGAACTGACCGGCCTGTGCAAGTA
CGATAGCTTACTCAGACAGTCGGTTCCAAGACAGAAGAGGACATCAATGC
TCAAACAACGCGGAGCAAACAAACACTATAATCCGCACAAA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig998:175986..176476+

>mRNA_D-dichotoma_M_contig998.20575.1 ID=mRNA_D-dichotoma_M_contig998.20575.1|Name=mRNA_D-dichotoma_M_contig998.20575.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=618bp|location=Sequence derived from alignment at D-dichotoma_M_contig998:175986..176476+ (Dictyota dichotoma ODC1387m male)
GGGAAACTAGGTATAAATAGGTATCTACGTGCAAGTAAGTTCAAAAGCAA
AGGGGGTTGGTCTATCACAAGAAAAGCAAGCAACGAAACCAGGGAAGCGG
GGAAGGAGAAACCGAAGAACAGTAAGACAACCGCAAAACTCGAACACAAT
AGTCAGGGAGGGAGGGTCATCAACAGCTCCACCAGGCTCGTGACACCAAC
TAAAAAGAAACGAGGCATAAGGTGCAATGGTATCGTAGATCAGCTTGGAT
CCATCCGCAGTGTCCCTGGGACTTTTGGGAACGAACGCTCCGTAGGTCTA
TTGTGGTAGGGGAAACTAGGTATAAATAGGTATCTACGTGCAAGTAAGTT
CAAAAGCAAAGGGGGTTGGTCTATCACAAGAAAAGCAAGCAACGAAACCA
GGGAAGCGGGGAAGGAGAAACCGAAGAACAGTAAGACAACCGCAAAACTC
GAACACAATAGTCAGGGAGGGAGGGTCATCAACAGCTCCACCAGGCTCGT
GACACCAACTAAAAAGAAACGAGGCATAAGGTGCAATGGTATCGTAGATC
AGCTTGGATCCATCCGCAGTGTCCCTGGGACTTTTGGGAACGAACGCTCC
GTAGGTCTATTGTGGTAG
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