mRNA_D-dichotoma_M_contig93.20047.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig93.20047.1
Unique NamemRNA_D-dichotoma_M_contig93.20047.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig93.20047.1 vs. uniprot
Match: D7FTP2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP2_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 3.910e-30
Identity = 68/149 (45.64%), Postives = 100/149 (67.11%), Query Frame = 1 
Query:    1 RDFWVSYISDQAA--AGEGRGFDIPFVRDKLTEAGFVAHRRHIEQERPLEEDLLSLRIDLLPDYLRRWQKAKDAFDRIEVESAAAAAGEEEPGQVDRVAGISGTVNRADIQLLLGDAGEIATRLWLEQELSFASRRALVLCDVIEERRK 441
            R+FW+SY++DQA   A    G  + F    LT++GFV HRR +E + PLE DLL++ +DLLP+ L+RW + K+AFDRI+ E  +AA    E G   R     G+V+R + QLLL DAGE+ ++L +E+EL+ A+  A ++ +V+EERRK
Sbjct:  173 REFWLSYVADQAGPPAAADVGGAVSF-DGCLTQSGFVGHRRMVEADHPLEVDLLTMGLDLLPESLQRWLRVKNAFDRIDAEGVSAATERGERGAKSR-GDYDGSVDRGEAQLLLADAGEVMSKLRVEEELTLATMHAKLMLEVVEERRK 319
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BLAST of mRNA_D-dichotoma_M_contig93.20047.1 vs. uniprot
Match: A0A6U1BVW4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1BVW4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.390e-10
Identity = 52/146 (35.62%), Postives = 73/146 (50.00%), Query Frame = 1 
Query:   10 WVSYISDQAAAGEGRGFDIPFVRDKLTEAGFVAHRRHIEQERPLEEDLLSLRIDLLPDYLRRWQKAKDAFDRIEVESAAAAAGEEEPGQVDRVAGISGTVN--RADIQLLLGDAGEIATRLWLEQELSFASRRALVLCDVIEERRK 441
            W SY++D     E  G         LT   F+A+R  IE + PLE DLLS+ + LLPD L  W++ + AFDR+  E       EEE   + R AG     N  R + QL   D GEI + +  E+ L+    R  V+C+++   RK
Sbjct:  126 WRSYMTDMFGTDEAGG---------LTPGQFLAYREWIESQYPLEADLLSIGLPLLPDTLIAWKQCEAAFDRLADEGIT----EEEKFMLLR-AGEEYISNFPRCEFQLFAYDNGEIMSDMECERLLTTHQDRLAVMCELLGRHRK 257
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig93.20047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTP2_ECTSI3.910e-3045.64EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6U1BVW4_9STRA1.390e-1035.62Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig93contigD-dichotoma_M_contig93:573241..575517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-11_001660.1
Hectar predicted targeting categoryother localisation
Exons3
Model size442
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig93.20047.1prot_D-dichotoma_M_contig93.20047.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig93 573241..575516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931170.379091-CDS-D-dichotoma_M_contig93:573240..5734501622931170.379091-CDS-D-dichotoma_M_contig93:573240..573450Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 573241..573450 +
1690799647.068524-CDS-D-dichotoma_M_contig93:573240..5734501690799647.068524-CDS-D-dichotoma_M_contig93:573240..573450Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 573241..573450 +
1622931170.3934486-CDS-D-dichotoma_M_contig93:574698..5748571622931170.3934486-CDS-D-dichotoma_M_contig93:574698..574857Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 574699..574857 +
1690799647.0813413-CDS-D-dichotoma_M_contig93:574698..5748571690799647.0813413-CDS-D-dichotoma_M_contig93:574698..574857Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 574699..574857 +
1622931170.406132-CDS-D-dichotoma_M_contig93:575444..5755161622931170.406132-CDS-D-dichotoma_M_contig93:575444..575516Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 575445..575516 +
1690799647.1026766-CDS-D-dichotoma_M_contig93:575444..5755161690799647.1026766-CDS-D-dichotoma_M_contig93:575444..575516Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 575445..575516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig93.20047.1

>prot_D-dichotoma_M_contig93.20047.1 ID=prot_D-dichotoma_M_contig93.20047.1|Name=mRNA_D-dichotoma_M_contig93.20047.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=147bp
RDFWVSYISDQAAAGEGRGFDIPFVRDKLTEAGFVAHRRHIEQERPLEED
LLSLRIDLLPDYLRRWQKAKDAFDRIEVESAAAAAGEEEPGQVDRVAGIS
GTVNRADIQLLLGDAGEIATRLWLEQELSFASRRALVLCDVIEERRK
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mRNA from alignment at D-dichotoma_M_contig93:573241..575517+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig93.20047.1 ID=mRNA_D-dichotoma_M_contig93.20047.1|Name=mRNA_D-dichotoma_M_contig93.20047.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2277bp|location=Sequence derived from alignment at D-dichotoma_M_contig93:573241..575517+ (Dictyota dichotoma ODC1387m male)
AGGGACTTTTGGGTGAGTTACATCTCAGACCAGGCGGCTGCTGGCGAAGG
GAGAGGTTTCGATATCCCGTTCGTGCGCGACAAGCTCACCGAGGCGGGCT
TCGTTGCACACCGTCGTCATATTGAGCAAGAACGGCCGCTGGAGGAGGAT
CTCCTGTCTCTGAGGATCGACCTTCTACCTGACTACCTCCGACGATGGCA
AAAAGCTAAGGCAAGGCGTTCACACAACCTTTCGCCGTTGCTTGTTCCGC
CTCCGTGGAGTCATGTCCGCGGAGATCTAGATGTAGGAAGCGAAGCGATA
GATGGTTCGATGCCCGCATCGGCGCATGACCTTAAGTTTAGCCATGAGAG
CTTAACTCTTCCGGGCTAAGGCCGATCGACCCTTATAGCAATAGCACCCG
AATAGGAAGAGAACCATTTAATTTTTTCAATTTTAGAGCCGCCTTGGCAT
CGATTTTTGAGATTTCGAACAAAATACCTTGGATTTAAGTCCAACCCCTT
TTTTAGGCACTGGACAAATATAAGCGAGATACTGTAGTTGTACCATTAGA
AACCTTTCTTAGCTGCTGCTGGCCTTCAGATTCGGGTCGGGCCCGAATCG
GTGGTTTCGCCCGGGTATGAACTTCATGTTCGGGAGAGACCGCACAGAAT
CGGGGCCGCCCCGAACCTGAAAGCCCGGTTTCAGATGAACAAGAAACAAA
TTGTATAGCTGCGATGGCTCTCTTCATATTCGGGTGCCCGTAAGGGTCGA
TCGGCCTCAGTGATCACTCAGGACTCCAGCTCTACTTGGACTGACCGCAT
GCGCGCCGTCCATGTTTATCTCAAGTTGCCGTTTACCGGTCTTCCAAACT
CCTCCGAAGCTACAGGGGTTGAAATAATAAGAAATCGGATCTTCGATCGA
CTGCTCTTTGAATTCAAGCAAACGAGATCGAAGAGCCATTTTGTTACCGT
TTGTGAGTGCTGTGCGCGCCACAAGGTTGCACGTCAGATCGAAACAAGCG
TAGTGCTCAAGGGTGCGGTGTAACGGAGTACGTGAGGAAAAACACAGTCC
AAATCTCGCCCCAAAAAGAGTGCTCACAATATGTTTCGGACCAGATTCGG
AACATTTTTTTGTTCTGTTTTCTATGAATGTACATCCGATCATCCTCGTG
AACAATTTTATTGGGGTCAGATTTGAACCGTTTTTTCCCCCGCGTACTCC
GTCACACCCTTGAGCACTACTGTAGACGATTTGTATACTGAATCCAAGTA
AACAGGATTCACGATCTAGTTGCGATTTTCGAATTAACCGTACGTGGTCT
TCGGCGGGTGATCGATCGTATGAAGGAGTTGTAATGGAATGCGTTCGCGG
GATGCCATGCAGGCGAAGCGTTGGGCGTGGCCCCCTTATCGCACGTCACG
GTTTCGCTTGTGGCACGAGGTCGTGAGCCCGTGGCACGTCCCTATGCATG
TGTCACAGGACGCGTTTGATCGCATCGAGGTGGAGTCGGCGGCTGCCGCA
GCGGGGGAGGAAGAGCCCGGCCAGGTCGATCGAGTCGCCGGAATAAGCGG
GACGGTCAACAGGGCGGACATTCAACTTCTCCTCGGAGACGCCGGCGAGA
TTGCGACAAGGCTCTGGGTGAGAGGATACAGGTGCTTGCCTGTGTTGGAA
GGGTTTTCGATGAGAAAAAAAGGCGAGTTCCATGCACCGGAAGGGTTTTG
TGAAGTAGGGGGAGGGATAGGGTATTTCATCAAGGCTCTGGGTGAGAGGA
TACAGGTGCTTTCCTGTGTTGGAAGGGGATTATGATTAGAAAAAAAGGTG
GGTTGCATGTATCGGAAGGGGTTTGTGAAGTAGGGGGAGGGATAGGGGTA
TTTCATGACTGGGTAGGATGTCTCGTATCCGAGTGCCGTGTGTCGGCACC
CGAACAACGTCGTGGTGTATCGGTTATCGGATTTTGAGGCCATGGGATGG
GGTTGCTACAATTGTTTGCTTGTAGCTAGGAGATCCTCAGGTGTTCCATC
ACTTAGACGGCGTCATCGCACTGGACACATGGCCCTCTGTGGGTGCGGGG
CAGATTTCTTGGAACATTCCGGAGGGAGGCGTTGTCTCTATGGAATGTTT
CGACCCCCAGCGACTCCGCTTCCTTAGTCCTGGAGTTTTGGCAGGGGTCC
TTGAGGCTCAGCTAGTTGCTTGCCATGGTTCTGCTTCCTTGACACTCTCC
GCAGCTCGAACAAGAGTTATCCTTCGCATCTCGCCGGGCCCTGGTCCTCT
GCGACGTCATCGAAGAGCGACGCAAAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig93:573241..575517+

>mRNA_D-dichotoma_M_contig93.20047.1 ID=mRNA_D-dichotoma_M_contig93.20047.1|Name=mRNA_D-dichotoma_M_contig93.20047.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=882bp|location=Sequence derived from alignment at D-dichotoma_M_contig93:573241..575517+ (Dictyota dichotoma ODC1387m male)
AGGGACTTTTGGGTGAGTTACATCTCAGACCAGGCGGCTGCTGGCGAAGG
GAGAGGTTTCGATATCCCGTTCGTGCGCGACAAGCTCACCGAGGCGGGCT
TCGTTGCACACCGTCGTCATATTGAGCAAGAACGGCCGCTGGAGGAGGAT
CTCCTGTCTCTGAGGATCGACCTTCTACCTGACTACCTCCGACGATGGCA
AAAAGCTAAGAGGGACTTTTGGGTGAGTTACATCTCAGACCAGGCGGCTG
CTGGCGAAGGGAGAGGTTTCGATATCCCGTTCGTGCGCGACAAGCTCACC
GAGGCGGGCTTCGTTGCACACCGTCGTCATATTGAGCAAGAACGGCCGCT
GGAGGAGGATCTCCTGTCTCTGAGGATCGACCTTCTACCTGACTACCTCC
GACGATGGCAAAAAGCTAAGGACGCGTTTGATCGCATCGAGGTGGAGTCG
GCGGCTGCCGCAGCGGGGGAGGAAGAGCCCGGCCAGGTCGATCGAGTCGC
CGGAATAAGCGGGACGGTCAACAGGGCGGACATTCAACTTCTCCTCGGAG
ACGCCGGCGAGATTGCGACAAGGCTCTGGGACGCGTTTGATCGCATCGAG
GTGGAGTCGGCGGCTGCCGCAGCGGGGGAGGAAGAGCCCGGCCAGGTCGA
TCGAGTCGCCGGAATAAGCGGGACGGTCAACAGGGCGGACATTCAACTTC
TCCTCGGAGACGCCGGCGAGATTGCGACAAGGCTCTGGCTCGAACAAGAG
TTATCCTTCGCATCTCGCCGGGCCCTGGTCCTCTGCGACGTCATCGAAGA
GCGACGCAAACTCGAACAAGAGTTATCCTTCGCATCTCGCCGGGCCCTGG
TCCTCTGCGACGTCATCGAAGAGCGACGCAAA
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