mRNA_D-dichotoma_M_contig93.20039.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig93.20039.1
Unique NamemRNA_D-dichotoma_M_contig93.20039.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig93.20039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig93contigD-dichotoma_M_contig93:181584..182589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size327
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig93.20039.1prot_D-dichotoma_M_contig93.20039.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig93 181584..182131 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.0959098-CDS-D-dichotoma_M_contig93:181583..1816781622931168.0959098-CDS-D-dichotoma_M_contig93:181583..181678Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 181584..181678 -
1690799645.9045742-CDS-D-dichotoma_M_contig93:181583..1816781690799645.9045742-CDS-D-dichotoma_M_contig93:181583..181678Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 181584..181678 -
1622931168.1104665-CDS-D-dichotoma_M_contig93:182028..1821311622931168.1104665-CDS-D-dichotoma_M_contig93:182028..182131Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 182029..182131 -
1690799645.913793-CDS-D-dichotoma_M_contig93:182028..1821311690799645.913793-CDS-D-dichotoma_M_contig93:182028..182131Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 182029..182131 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.1290092-UTR-D-dichotoma_M_contig93:182131..1822211622931168.1290092-UTR-D-dichotoma_M_contig93:182131..182221Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig93 182132..182221 -
1690799645.924813-UTR-D-dichotoma_M_contig93:182131..1822211690799645.924813-UTR-D-dichotoma_M_contig93:182131..182221Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig93 182132..182221 -
1622931168.14861-UTR-D-dichotoma_M_contig93:182550..1825891622931168.14861-UTR-D-dichotoma_M_contig93:182550..182589Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig93 182551..182589 -
1690799645.9348962-UTR-D-dichotoma_M_contig93:182550..1825891690799645.9348962-UTR-D-dichotoma_M_contig93:182550..182589Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig93 182551..182589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig93.20039.1

>prot_D-dichotoma_M_contig93.20039.1 ID=prot_D-dichotoma_M_contig93.20039.1|Name=mRNA_D-dichotoma_M_contig93.20039.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=66bp
MAFLNIAQHHSVMTTAEENRLTALDLLQKNMDDRVLFTNAGLILEDDPVV
SNYMAMRRTSNSPTS*
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mRNA from alignment at D-dichotoma_M_contig93:181584..182589-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig93.20039.1 ID=mRNA_D-dichotoma_M_contig93.20039.1|Name=mRNA_D-dichotoma_M_contig93.20039.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1006bp|location=Sequence derived from alignment at D-dichotoma_M_contig93:181584..182589- (Dictyota dichotoma ODC1387m male)
CCGGAGCACCAACTGACACCGAGAAGCACACCGCTCCGAGTAAGTATTTT
TACTTGTGTGTCTCTTGCTTACATAGCTTGTTTGTTGTAGAGACTCAGGC
TTTGTGTGTGGGCGGTGTGGACGTGTTAGCAGTGATGTGGTCAACGAGAA
GGGTGTGGGCTGCGATCAAAGTACCATCTCATCTAAAAGAGCTACAGCAG
CAGTCATCCTAACTTTGCGATTCCTCTCATACCATGAGGGTTCCTTCAGT
TCGCTAGTGTCGCGATTCTGTATGTTCTCGCGTGTGAACCGTTCCACCAA
TGTTCTGCTTCTCTTAATTACATCTTGGTTCTTTCTATCCGACTGTTGTT
ATTGCTTTTGTACTGCAGGCCGATCATGTGGAAGCTTCTTAACATCGACG
TGTTTGGTGGAGGGAACAACGTTGAATTGGACCTTCGTCACCCCGCGGAC
TGCCTTCGATGGCCTTTCTCAACATCGCCCAACACCACTCGGTCATGACC
ACAGCCGAGGAGAACCGCTTAACTGCTCTTGACCTTCTCCAGAAAAACAT
GGACGACCGAGGTACCCTGGTGGTCCCCTTACCTGACTTTGAGTTCGAGC
GGACACGCCTTAAAGTTGATTCCTCGGGGTCAAGACAAACAAGTATGGTC
TGATATGGCTGGATTTCCTCCAAGGGAGGCTAAAAAATAGTTTGGCGTTG
GCTCTCGCATAAACTGTCGATTTGCTGGGTGTTGCATGTGGTATCCCTCT
GCCGTTTTCTTGAGTTAGTTTTGACGCGGCCTCTATTTTTGAAGTTTCCG
TCAAAATCGGACATGCTTCCTATGCCGACGAAGATTAGTTCGTAGCCGCG
TCTCCCTTTCGACTCGTCTGCGTGATTGTATCCCCCCGCCCGATTGGGTT
CATTGCCAAAGTTTTGTTCACTAATGCAGGGCTAATACTCGAGGACGACC
CGGTCGTTTCTAACTACATGGCTATGCGTCGGACGTCGAATTCCCCAACG
AGCTGA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig93:181584..182589-

>mRNA_D-dichotoma_M_contig93.20039.1 ID=mRNA_D-dichotoma_M_contig93.20039.1|Name=mRNA_D-dichotoma_M_contig93.20039.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=396bp|location=Sequence derived from alignment at D-dichotoma_M_contig93:181584..182589- (Dictyota dichotoma ODC1387m male)
ATGGCCTTTCTCAACATCGCCCAACACCACTCGGTCATGACCACAGCCGA
GGAGAACCGCTTAACTGCTCTTGACCTTCTCCAGAAAAACATGGACGACC
GAGATGGCCTTTCTCAACATCGCCCAACACCACTCGGTCATGACCACAGC
CGAGGAGAACCGCTTAACTGCTCTTGACCTTCTCCAGAAAAACATGGACG
ACCGAGTTTTGTTCACTAATGCAGGGCTAATACTCGAGGACGACCCGGTC
GTTTCTAACTACATGGCTATGCGTCGGACGTCGAATTCCCCAACGAGCTG
ATTTTGTTCACTAATGCAGGGCTAATACTCGAGGACGACCCGGTCGTTTC
TAACTACATGGCTATGCGTCGGACGTCGAATTCCCCAACGAGCTGA
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