mRNA_D-dichotoma_M_contig929.20032.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig929.20032.1
Unique NamemRNA_D-dichotoma_M_contig929.20032.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig929.20032.1 vs. uniprot
Match: D8LNX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX1_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.550e-10
Identity = 44/93 (47.31%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:   76 EEDPHLHALECDGSSGGFDEGFNELARAPRRMVAAKLPRKPRTRDRRRVQLKPNLRGPRDRGGHLIVPTVFRKHLPPPPFGETMGHGLKLRRD 354
            E+DPHL   +  G+ G                    LPRK  ++ RR V  KP LR PRDRG    +PTV RKHLPPPP GETMGHGL   RD
Sbjct:  626 EDDPHLRLFKEGGNIGXXXXXXXXXXXX----XXXXLPRKRGSKQRRGVLAKPELRRPRDRGTQPPIPTVTRKHLPPPPLGETMGHGLSPPRD 714
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BLAST of mRNA_D-dichotoma_M_contig929.20032.1 vs. uniprot
Match: A0A6H5KSZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.780e-9
Identity = 37/57 (64.91%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:  184 LPRKPRTRDRRRVQLKPNLRGPRDRGGHLIVPTVFRKHLPPPPFGETMGHGLKLRRD 354
            LPRK  ++ RR V  KP LR PRDRG    +PTV RKHLPPPP GETMGHGL   RD
Sbjct:  473 LPRKRGSKQRRGVLAKPELRRPRDRGTQPPIPTVKRKHLPPPPLGETMGHGLSPPRD 529
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig929.20032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNX1_ECTSI2.550e-1047.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSZ6_9PHAE2.780e-964.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig929contigD-dichotoma_M_contig929:138221..143021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1475
Cds size861
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig929.20032.1prot_D-dichotoma_M_contig929.20032.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig929 138829..143015 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.4710157-UTR-D-dichotoma_M_contig929:138220..1388281622931166.4710157-UTR-D-dichotoma_M_contig929:138220..138828Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig929 138221..138828 -
1690799645.1477387-UTR-D-dichotoma_M_contig929:138220..1388281690799645.1477387-UTR-D-dichotoma_M_contig929:138220..138828Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig929 138221..138828 -
1622931166.5828724-UTR-D-dichotoma_M_contig929:143015..1430211622931166.5828724-UTR-D-dichotoma_M_contig929:143015..143021Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig929 143016..143021 -
1690799645.1964571-UTR-D-dichotoma_M_contig929:143015..1430211690799645.1964571-UTR-D-dichotoma_M_contig929:143015..143021Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig929 143016..143021 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931166.4848466-CDS-D-dichotoma_M_contig929:138828..1394431622931166.4848466-CDS-D-dichotoma_M_contig929:138828..139443Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig929 138829..139443 -
1690799645.1566849-CDS-D-dichotoma_M_contig929:138828..1394431690799645.1566849-CDS-D-dichotoma_M_contig929:138828..139443Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig929 138829..139443 -
1622931166.513032-CDS-D-dichotoma_M_contig929:140730..1409181622931166.513032-CDS-D-dichotoma_M_contig929:140730..140918Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig929 140731..140918 -
1690799645.169278-CDS-D-dichotoma_M_contig929:140730..1409181690799645.169278-CDS-D-dichotoma_M_contig929:140730..140918Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig929 140731..140918 -
1622931166.565555-CDS-D-dichotoma_M_contig929:142957..1430151622931166.565555-CDS-D-dichotoma_M_contig929:142957..143015Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig929 142958..143015 -
1690799645.1842165-CDS-D-dichotoma_M_contig929:142957..1430151690799645.1842165-CDS-D-dichotoma_M_contig929:142957..143015Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig929 142958..143015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig929.20032.1

>prot_D-dichotoma_M_contig929.20032.1 ID=prot_D-dichotoma_M_contig929.20032.1|Name=mRNA_D-dichotoma_M_contig929.20032.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=287bp
MRRGARSRNKSRVPGRARQARSPEEDPHLHALECDGSSGGFDEGFNELAR
APRRMVAAKLPRKPRTRDRRRVQLKPNLRGPRDRGGHLIVPTVFRKHLPP
PPFGETMGHGLKLRRDDKTRSKVRVAPGVASTVRHPDKYDEGEQPQQRTH
QQQASALSGDGPHESETPQQSQPPCLETLKSRVTGTSPLLQPEQGSNPRW
RSGQEHEHGTEGHHRQLISVHPQEGQIFRDRGRYRRRRQRDRGGDEGLIR
SERSPETIQALMRIDEKTPARHHNLRCPHEIEGQKR*
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mRNA from alignment at D-dichotoma_M_contig929:138221..143021-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig929.20032.1 ID=mRNA_D-dichotoma_M_contig929.20032.1|Name=mRNA_D-dichotoma_M_contig929.20032.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=4801bp|location=Sequence derived from alignment at D-dichotoma_M_contig929:138221..143021- (Dictyota dichotoma ODC1387m male)
GGATCCATGAGGCGAGGAGCTCGCAGTCGCAACAAAAGTCGGGTGCCAGG
AAGAGCTCGGCAAGGTAGGGAGCAGGCAGCAGGCGTTGTTCGTGTTCGAC
AGAAAAAGGGGGCCGGAGCAGCTCGTATCTTGACCTTGCTCAGGAAGCAC
AGAAATTGTTCAAGATTATTCAATATTTTCCTCAAATATCCCTCATACGC
CAAACGCTGCTGTTGCTGATGACTATGTAATGTACAGTACTGGGCATAGC
ACTTTAATAAAGTGTTTGCGGAATTTTCAATTATAGTTTAATTTACCGTT
AACAGAAACCGACGATAACGGACGCTAGATTCGGCGATGTCCGAGTTAAA
CTTTAGAACAGCCAACTAGAGTCTCTTCCCGGGTATTCGTGATGATCACC
GGCACAACCAGTCCAACCTACACCCAACGACATAATCCCGCCGCACTTTT
TACCGAGAGGGTTCCATGAATATGCTGAATTTTGGGGTTAACTTCGGGGA
TCTTCATGGAAATCCTCCCAAATTCCTAAAATTTTCTTGGTGCCGTTCGT
AAAGGGGCAACTCAGGTGAAGTTAGCGATAAAGTAAACTCGTTTGCAAAA
AACTCTACAACTCTAAATCTCATCAGATCAGATTTCGCCGAACCTGGTTT
CCGTTGTCGTCGGTTTCTGGTGACGATAAATTAAACTCTATATAAAATTT
TCGCAAACACTTTAATGGCTCTTTAACCCTTTAAACGCCGGGGTTGGATT
AACCCATACTAAAATCAAGATAGAAGACCCTACTGGGCGCTAAACGGGTT
AACGTTGTATCTTGGATTCAGTATTGACCTCTTCAAAGATTCATGAAAGT
GCTACAGTACTATCAAAGATAACAATCGGGCTCTTTTCACGGCTACATAC
TAAATCCAAGTAAAAAAAAATAAGGAGCCCGATTGTAGTATGTAGCCTGT
TCAGCGTTGCGAGATGCTCTCTTATTTATCCCTCCGAACCCAAAACAATT
CAACCCGCGAGGTCGCTCGCGGACACACTCTTGGGATTGCAATGCACTCT
TCTCCAGCGTCCGCCTAGGCTCGACCCGCCCTTCTTGCGTCGCCGTAGAG
CAGAGGACATCAACGCCGGCGCGAAGGGCTCGATCATCCCACACGGTGCC
GACTCGTACCCACCCACGGGGTGTCCTGTACCGCTGGTCCCTACCAGCTG
GACCAGCCAAGCATGAGATATTTTAGTTGTTCGCCCATGCGCAATCCAAC
AATTGGAGTTAGGCCATGAAAGTTTGACCTGGAACTTTGTGTACAGAGAG
CAACACATTCACGGCCGTTCCAGTGGATTTTTGTTTCGAATATGAGTGAC
TTAGGACGATATTAAGGCGAATATGGTGTGCAAACGGACCGATATTGAAT
TAAAAAGAGAAAATGTCAACTTGGAACGGCCGTCAGTTTGTTCCTAGGGC
TATAAGTGCTGTGTATGCAAAACATCAGCTCAAATATCGAAGATCTAGGC
GGCGCGTGGCGCGATTTCCTCCCAGTTGCGGAACTATACTAAATTCAAGT
ATAAACAAAAAAAAATGATGTAACTTTTGGACGGCAGTGAATTACGCACT
GAAAGGACTATTGAGCATATCCTGTGGTCAGTGACAATGGTATCCCAAAC
CCTCAGGTCAAAACTCGAACGACTGGGTCAGGTATGGCATGGTAACCTCT
CAAGCTAAGTAGATTAAACTCAAGTGTAATCAACAATCGGTTACCACACA
TCTCACGTCCATGGAGAATGACAATATGCTTGATTCTCATCGCCAAGAAA
CGATTTGAAATTTTGGTTCCAAGGGCGGGCTAATTTCCTACTTGCATGGG
ACGTTTGCCAACAACGAAGGACGCCTTTCTAACACCCTGTGAAGGTAACC
AATTGGAATCTCATGAGGATGGGTGCAGAGAAGAGGATGAGGTGATTGCA
TATATATATATATATATATATATATATGCCTTTTGCTCTTTCTAGTTCCC
TCTTGTTCTTGAGATATGCTTGGGCGGTGAATTGCGAGTCACTGGGCTGG
CCCAGCTGGTATTGATGAAGAAGACGACGCGAACGCCTCCTCCCTCTGTG
CAGCTCGAAGCCCGGAGGAGGACCCCCATCTTCATGCTCTAGAATGTGAC
GGTTCATCCGGAGGCTTCGATGAGGGATTCAACGAACTAGCGCGAGCACC
TCGGCGGATGGTCGCCGCCAAGCTGCCGCGCAAGCCGAGGACTCGAGATC
GACGTCGGGTGCAGCTCAAACCGAACCTCCGTGGGCCGAGAGTGAGTCAG
TCCAAGCCGTGATGCTCACCACACCTCATCAGCACCAGTCAGTGAAACGG
ATTCACCATCTCGAGCGAAAAAACATACCCTGATATATACTACTACTCCC
AACTCCCAACCAGGGCAGAAACTAATACAGTAGAGGGGTCCAGATAGGAC
CGCCCGGTTACGGCCTTAACTCAGAAAATAGGCGAACGCGACAGGTACGA
TCAATTCATGAGCGCCGCAAATCACCACAACACTACCACTTCCGATTATT
TCTGTACAGTAGTACAGTACTGTGGTTTCACCTGCACCTGCTCATGAAAC
CACTTGCTCAACGGCGGGGATGAACATTGCATCCGAACCCAGGGGATGAC
TCCATTTCCTCTTTTTGTGCTACCATGATCTGGCCCAAACTCGCTACCAC
GCGCTACTTCGGGCGGCCCTATCTGGAACCCTCTACTGTAATGCAGTGTA
GCAGCTACCCTTCATCTCGACGGGAATCATCGTCCAAAAAGTTAAAGCCA
TGCGTACAGTAGCTCCCAAACGTGGCGGGAGGTAGCTAGCTAGGAATGGT
GGGACGTAGGTAGACCCTTGACCGACGAGTCAGTGGATATCGACATGAGA
GGTTTTGCTTCAACAAGGTCAGCTTCAGACGCGCCGCACGTTCCTCAAAT
GCAAGGAGCCTTCGCAGCCTGCTGGTAGTGACATTTTATATGGTATATTC
TACTGCAACAAGAAGCAGTCGAGGGCCAGAGATAACCAAACTTCCGATAA
CCAATGGACTATAGATAACCAAGACCATTGGTAGAACAAGAAGGGGAAAT
GCAGCCCTCCCCTGGGTTTGGATGCAATCATTTGAGGGAAGCGTGCATGG
CATACTTTCCCGGACGATGGAAGTACAGGTTATCAGCTTTTGCGGGAATT
ATACGTTCTGGTTATTTGCCGCATTCATGGATGAAATGGCCTTTGCTCGG
TAGACTTGAGATCACCAAAATCTCTAGATAACCAAAGACCAGGCTTTGGC
TTTCTCTGGACCTCGACTGTATATATATTAAAGCCCTAAGAGAGCATCCC
GTAAGAGAACCGAATACACGCTTAAAGAGGTAACTAACGGTAAGGGTACG
GATTGGGGTTACGTCCGGGTCACGTGAAGGGTGACCATCCGTTGGTAGGT
TGCGAAGGCGGCAGGGTTCTGTACATTCCATACTGTGTTAAGATGCTTTG
GGCGGGTGTAGGCTGACGAAGGCAGCTCCCAAACGCTGACTCCTCCCTAT
TGGATGTTTTGGGCTTCTCGTCCGGCAGGATCGAGGCGGGCACCTGATCG
TGCCCACCGTCTTCCGGAAGCATCTCCCTCCACCTCCGTTCGGCGAAACG
ATGGGTCACGGCCTCAAACTCCGGCGAGACGACAAGACAAGATCAAAGGT
GCGGGTTGCCCCAGGCGTGGCGTCGACCGTCCGCCATCCTGACAAATATG
ATGAAGGAGAGCAGCCGCAGCAGCGAACCCATCAGCAGCAAGCTTCAGCT
CTATCCGGGGATGGCCCACACGAAAGCGAAACCCCGCAGCAATCCCAGCC
GCCGTGCTTGGAAACCCTCAAGTCTAGGGTGACAGGAACATCCCCTCTTC
TCCAACCAGAGCAAGGCTCTAATCCCCGGTGGAGATCTGGCCAGGAACAC
GAACACGGGACCGAGGGCCACCATCGGCAGCTGATCTCTGTTCACCCTCA
GGAAGGACAAATCTTCCGAGATCGAGGACGATACCGCCGGCGGCGGCAGC
GGGATCGGGGTGGCGACGAGGGCCTGATACGCTCCGAGCGATCACCCGAG
ACGATCCAGGCACTGATGCGGATCGATGAAAAGACCCCCGCGCGCCATCA
CAACCTTCGATGTCCACATGAGATCGAGGGTCAGAAAAGGTAGAGAGAGA
GAGGATAGATACTACTACGTGAACGTCTCGGTGTTTTCGAACGGTGCTTA
ACCCTATAGTACATTATTCCCCGCCCTTAGAACCCACACTGACTAGTGAA
CCCCGACACCCTACTCGGGTGCTTGGAGTATTCCAAATATTGACGTCCCC
GACCGATAGAGGTTATGTAAACATCACAAGGAAAGCCCTTGTTTCACGTC
TTCGCGGGAGCGACGCATTTCAGGCACGGGATGAAATGGACCAATGGGAG
TCGAGCCCGTTCAGCACACCGTGTGTTGACAGTATCAGTATAGACGGAGC
AGTGTTCTCTGTATGTCGCCATTGTAGTGATCTATGACTTGGGCATTGTC
TGATATCGAGCCGCGGTCATAGCCTGGTTACTTGTGACTAATAGGTGGTA
ATCGAGGAGGCGGTCATCCGCGAAAGTCTGTTGTCAATGATAATCATAAT
CTTCATGGGTAGGGCCCCATAGATACTATACCAGCAAAAGGCGTATTGCA
TGTTGTGTAGTTTGTGTGTCCTCCGTATCTGATGCTATCTTCGAGGAGGT
CGCTGGGCGTGTTGTCTGAACCATGTAGCACACACACACCAGCGCATGCG
G
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig929:138221..143021-

>mRNA_D-dichotoma_M_contig929.20032.1 ID=mRNA_D-dichotoma_M_contig929.20032.1|Name=mRNA_D-dichotoma_M_contig929.20032.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1722bp|location=Sequence derived from alignment at D-dichotoma_M_contig929:138221..143021- (Dictyota dichotoma ODC1387m male)
ATGAGGCGAGGAGCTCGCAGTCGCAACAAAAGTCGGGTGCCAGGAAGAGC
TCGGCAAGATGAGGCGAGGAGCTCGCAGTCGCAACAAAAGTCGGGTGCCA
GGAAGAGCTCGGCAAGCTCGAAGCCCGGAGGAGGACCCCCATCTTCATGC
TCTAGAATGTGACGGTTCATCCGGAGGCTTCGATGAGGGATTCAACGAAC
TAGCGCGAGCACCTCGGCGGATGGTCGCCGCCAAGCTGCCGCGCAAGCCG
AGGACTCGAGATCGACGTCGGGTGCAGCTCAAACCGAACCTCCGTGGGCC
GAGACTCGAAGCCCGGAGGAGGACCCCCATCTTCATGCTCTAGAATGTGA
CGGTTCATCCGGAGGCTTCGATGAGGGATTCAACGAACTAGCGCGAGCAC
CTCGGCGGATGGTCGCCGCCAAGCTGCCGCGCAAGCCGAGGACTCGAGAT
CGACGTCGGGTGCAGCTCAAACCGAACCTCCGTGGGCCGAGAGATCGAGG
CGGGCACCTGATCGTGCCCACCGTCTTCCGGAAGCATCTCCCTCCACCTC
CGTTCGGCGAAACGATGGGTCACGGCCTCAAACTCCGGCGAGACGACAAG
ACAAGATCAAAGGTGCGGGTTGCCCCAGGCGTGGCGTCGACCGTCCGCCA
TCCTGACAAATATGATGAAGGAGAGCAGCCGCAGCAGCGAACCCATCAGC
AGCAAGCTTCAGCTCTATCCGGGGATGGCCCACACGAAAGCGAAACCCCG
CAGCAATCCCAGCCGCCGTGCTTGGAAACCCTCAAGTCTAGGGTGACAGG
AACATCCCCTCTTCTCCAACCAGAGCAAGGCTCTAATCCCCGGTGGAGAT
CTGGCCAGGAACACGAACACGGGACCGAGGGCCACCATCGGCAGCTGATC
TCTGTTCACCCTCAGGAAGGACAAATCTTCCGAGATCGAGGACGATACCG
CCGGCGGCGGCAGCGGGATCGGGGTGGCGACGAGGGCCTGATACGCTCCG
AGCGATCACCCGAGACGATCCAGGCACTGATGCGGATCGATGAAAAGACC
CCCGCGCGCCATCACAACCTTCGATGTCCACATGAGATCGAGGGTCAGAA
AAGGTAGGATCGAGGCGGGCACCTGATCGTGCCCACCGTCTTCCGGAAGC
ATCTCCCTCCACCTCCGTTCGGCGAAACGATGGGTCACGGCCTCAAACTC
CGGCGAGACGACAAGACAAGATCAAAGGTGCGGGTTGCCCCAGGCGTGGC
GTCGACCGTCCGCCATCCTGACAAATATGATGAAGGAGAGCAGCCGCAGC
AGCGAACCCATCAGCAGCAAGCTTCAGCTCTATCCGGGGATGGCCCACAC
GAAAGCGAAACCCCGCAGCAATCCCAGCCGCCGTGCTTGGAAACCCTCAA
GTCTAGGGTGACAGGAACATCCCCTCTTCTCCAACCAGAGCAAGGCTCTA
ATCCCCGGTGGAGATCTGGCCAGGAACACGAACACGGGACCGAGGGCCAC
CATCGGCAGCTGATCTCTGTTCACCCTCAGGAAGGACAAATCTTCCGAGA
TCGAGGACGATACCGCCGGCGGCGGCAGCGGGATCGGGGTGGCGACGAGG
GCCTGATACGCTCCGAGCGATCACCCGAGACGATCCAGGCACTGATGCGG
ATCGATGAAAAGACCCCCGCGCGCCATCACAACCTTCGATGTCCACATGA
GATCGAGGGTCAGAAAAGGTAG
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