mRNA_D-dichotoma_M_contig924.19980.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig924.19980.1 vs. uniprot
Match: D7G262_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G262_ECTSI) HSP 1 Score: 193 bits (490), Expect = 5.780e-51 Identity = 107/219 (48.86%), Postives = 143/219 (65.30%), Query Frame = 1
Query: 280 VRADCDELK-AISLPLTGDLTVTLTEANAPCDNIAEGELEDFVIEGGALTLTGLDVATFSNVRFTVMDGASLIFDFDKTEFGPNSDFIFEDSFGEYMLEIMEGGYAEFSGEFLATGVRNYFSVFLN--AGSLEFKSDAEFLEPGTNLFRDNTGKLRFRGNVNMVDAMLLGINNIGGTVRIAGDSNFENIGSSFDGADGAAVANRDDGIAIFDGTAVFNN 927
VRA CD+L+ A+S PLTGD T+ L+ +A C + + ELE+F +EGG LTLTG F+N++FT+MD A LIFD+D TEFGPN + EDSFG YM++++ GG EF GE ATG+ N SVF N G++EF +A F + GTN+FR N G+LRF G+ + + L I+N GG+VRI G SFDG G +N D G AIF G A+F++
Sbjct: 18 VRASCDDLRTALSSPLTGDTTLELS-GDADCPILEDNELEEFTVEGGTLTLTGPSTTKFTNLKFTIMDQAGLIFDYDTTEFGPNLGYEQEDSFGGYMVQVLSGGSVEFLGEMAATGLANMRSVFYNEAGGNIEFADNAVFDDIGTNVFRSNLGRLRFYGDATFTNNIYLAIDNEGGSVRIXXXXXXVENGRSFDGHSGGGFSNTDGGTAIFRGPALFSS 235
BLAST of mRNA_D-dichotoma_M_contig924.19980.1 vs. uniprot
Match: D7FHY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY2_ECTSI) HSP 1 Score: 108 bits (269), Expect = 2.300e-21 Identity = 96/265 (36.23%), Postives = 134/265 (50.57%), Query Frame = 1
Query: 229 LISGAAVGCVLVVTSTVVRADCDELKA----ISLPLTGDLTVTLTEANAPCDNIAEGELEDFVIEGG-ALTLTGLD-VATFSNVRFTVMDGASLIFDFDKTEFGPNSDFIFEDSFGEYMLEIMEGGYAEFSGEFLATGVRNYFSVFLNAGSLEFKSDAEFLEPGTNLFRDNTGKLRFRGNVNMVDAMLLGINNIG--GTVRIAGDSNFENIGSSFDGADGAAVANRDDGIAIFDGTAVFNNVYSQENGGAVFNEGKMKFYSKARF 999
+I A+ + ++ STV +CD++ A +S DL T+ + P ++ AE EL IE G LT+ + F N+RF V +GASLIFD T GPNS + G+++ ++ EGG F+G+F A+ V N SVF N GS+EFK D+ F G N+FR N N G VR + + F + FDGA G A+ N G AIF AVF++ + + G AV N GKM+FY KA F
Sbjct: 5 VIGRCALLALALMASTVRSQECDDIDAYFGDVSSVTEIDLG-TIIRVDCPSNDDAE-ELPYITIESGKTLTVKSEESFVRFVNLRFIVEEGASLIFDMPVTRVGPNSGQ--SEGAGDFVFDVAEGGSLTFNGKFRASQVSNVRSVFYNRGSIEFKDDSLFNNNG-NVFRSNXXXXXXXXXXXXXXXXXXXXXNDGEDSFVRFSKTATFIDNAGFFDGAWGCAIDNG--GTAIFRDDAVFSD-HDCDEGAAVSNTGKMRFYGKAYF 261
BLAST of mRNA_D-dichotoma_M_contig924.19980.1 vs. uniprot
Match: A0A6H5J6U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6U2_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 4.710e-19 Identity = 46/87 (52.87%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 283 RADCDELK-AISLPLTGDLTVTLTEANAPCDNIAEGELEDFVIEGGALTLTGLDVATFSNVRFTVMDGASLIFDFDKTEFGPNSDFI 540
RA CD+L+ A+S PLTGD T+ L+ +A C + + ELE+F +EGG LTLTG F+N++FT+MD A LIFD+D TEFGPN ++
Sbjct: 5 RASCDDLRSALSSPLTGDTTLELS-GDADCPILEDNELEEFTVEGGTLTLTGPSTTKFTNLKFTIMDQAGLIFDYDTTEFGPNLGYV 90
BLAST of mRNA_D-dichotoma_M_contig924.19980.1 vs. uniprot
Match: A0A6H5JB77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB77_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 3.040e-11 Identity = 136/307 (44.30%), Postives = 164/307 (53.42%), Query Frame = 1
Query: 565 MLEIMEGGYAEFSGEFLATGVRNYFSVFLN--AGSLEFKSDAEFLEPGTNLFRDNTGKLRFRGNVNMVDAMLLGINNIGGTVRIAGDSNFENIGSSFDGADGAAVANRDDGIAIFDGTAVFNNVYSQENGGAVFNEGKMKFYSKARFFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALGVGGG--------GTVRFSRWXXXXXXXXXXXXXXXXXGATNL---------------------ENDGEPSSVEFRKPTKVRIEGNVKTETELGCNSIFVEEGSEVIGYPVDEDVDICEES 1392
M++++ GG EF GE ATG+ N SVF N GS+E LRF G+ + + L I+N GG+VRI G++ F G SFDG G +N D GIAIF G A+F++ E+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G VR + XXXXXXXXXXXXXXXXX +DG S +EFRKP +V I N KT ELGCNS++V+E S +IG+ VD D+CEES
Sbjct: 1 MVQVLTGGSVEFLGEMAATGLANMRSVFYNEAGGSIE---------------------LRFYGDATFTNNIYLAIDNDGGSVRINGEATFVENGRSFDGHSGGGFSNTDGGIAIFRGPALFSSNTCDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKFRGAVRATGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVVGSSDGG-SVIEFRKPARVDISINEKTGDELGCNSVYVDETSSIIGFNVD---DVCEES 282 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig924.19980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig924.19980.1 >prot_D-dichotoma_M_contig924.19980.1 ID=prot_D-dichotoma_M_contig924.19980.1|Name=mRNA_D-dichotoma_M_contig924.19980.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=391bp MKLISGAAVGCVLVVTSTVVRADCDELKAISLPLTGDLTVTLTEANAPCDback to top mRNA from alignment at D-dichotoma_M_contig924:206984..229178- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig924.19980.1 ID=mRNA_D-dichotoma_M_contig924.19980.1|Name=mRNA_D-dichotoma_M_contig924.19980.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=22195bp|location=Sequence derived from alignment at D-dichotoma_M_contig924:206984..229178- (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig924:206984..229178- >mRNA_D-dichotoma_M_contig924.19980.1 ID=mRNA_D-dichotoma_M_contig924.19980.1|Name=mRNA_D-dichotoma_M_contig924.19980.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=2346bp|location=Sequence derived from alignment at D-dichotoma_M_contig924:206984..229178- (Dictyota dichotoma ODC1387m male)back to top |