prot_D-dichotoma_M_contig1.11.1 (polypeptide) Dictyota dichotoma ODC1387m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-dichotoma_M_contig1.11.1
Unique Nameprot_D-dichotoma_M_contig1.11.1
Typepolypeptide
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Sequence length238
Homology
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BLAST of mRNA_D-dichotoma_M_contig1.11.1 vs. uniprot
Match: D7FMG4_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG4_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 2.960e-44
Identity = 88/188 (46.81%), Postives = 113/188 (60.11%), Query Frame = 0 
Query:   58 IVDEDSGCRAMVPYRARPRPWSMLASADLPGRTRPALLALSPP-----PFPFPSYGAEG-DSYGSEPGRPSTAAAVPHPEIPAEVFPLIFQFMDAQTLCNASSACRGWNQQGNDDRYWRRLCRSRFNVVPDAFAPPPDPIKRLYRLQYDSLRALRKGCQN--TYHTMPSPISAHTSAQILLGLVANAV 237
            + +   GCRA+VPY A P      A + LP    P LLAL P      P  + S      +S  S P       A    +IP EVFP+ FQ+MDA TLC  SS  R W +QGNDD+YWR LCR+RFNV+PDAFAPPPDPIKRLY+LQ+ S +A+ +G +    +   P  I  HTSAQ+L+GL+A+ +
Sbjct:   81 LPEAGPGCRALVPYTASP------ARSRLPLPAHPPLLALPPSLGCDAPSLYSSCSLSSCNSSSSSPNGSFKGGAARRVDIPLEVFPIAFQYMDALTLCTVSSVSREWKKQGNDDQYWRHLCRARFNVIPDAFAPPPDPIKRLYQLQHGSFKAMCRGDRRHGLHSGAPPVIPRHTSAQLLVGLLASNI 262
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1.11.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMG4_ECTSI2.960e-4446.81F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 132..172
e-value: 0.005
score: 26.0
IPR001810F-box domainPFAMPF12937F-box-likecoord: 130..174
e-value: 1.7E-8
score: 34.2
IPR001810F-box domainPROSITEPS50181FBOXcoord: 126..172
score: 10.16
NoneNo IPR availableGENE3D1.20.1280.50coord: 126..207
e-value: 8.3E-12
score: 46.9
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 131..214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1contigD-dichotoma_M_contig1:339265..355258 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1.11.1mRNA_D-dichotoma_M_contig1.11.1Dictyota dichotoma ODC1387m malemRNAD-dichotoma_M_contig1 337254..357559 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-dichotoma_M_contig1.11.1 ID=prot_D-dichotoma_M_contig1.11.1|Name=mRNA_D-dichotoma_M_contig1.11.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=238bp
MERTEETTAGRVEKRAYPSPRGTSRSSSAATSPSAAPSYKGSRLSGCRAG
AGAGRQRIVDEDSGCRAMVPYRARPRPWSMLASADLPGRTRPALLALSPP
PFPFPSYGAEGDSYGSEPGRPSTAAAVPHPEIPAEVFPLIFQFMDAQTLC
NASSACRGWNQQGNDDRYWRRLCRSRFNVVPDAFAPPPDPIKRLYRLQYD
SLRALRKGCQNTYHTMPSPISAHTSAQILLGLVANAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR036047F-box-like_dom_sf