mRNA_D-dichotoma_M_contig1008.148.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1008.148.1
Unique NamemRNA_D-dichotoma_M_contig1008.148.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig1008.148.1 vs. uniprot
Match: A0A6H5JCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK9_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.090e-23
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    4 NAFRRALR-GDSPARVEPMRVQLKPGASAVKAKPRRYDPVKSSWLASCVAALLAFGLEFRNLQAEWSSPAMAVPKKDSFRLVSDYKALN 267
            NAFR  +R GD PA VEP+RV LKPGA  VKA+PR Y+P+K++WLA C+A+ +  GL F N+QA  +S AMA PKK  +RL+SD++A N
Sbjct:  513 NAFRPGMRPGDPPANVEPLRVTLKPGALPVKARPRTYNPIKTAWLAGCMASPVVLGLVFLNMQAVSASAAMATPKKGGYRLLSDFRAAN 601          
BLAST of mRNA_D-dichotoma_M_contig1008.148.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.430e-20
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    4 NAFRRALRGDSPARVEPMRVQLKPGASAVKAKPRRYDPVKSSWLASCVAALLAFGLEFRNLQAEWSSPAMAVPKKD----SFRLVSDYKALN 267
            N FRR +RGD PA V PM V+LK GA  VKA+ R Y+P K+ WL +C+AAL+A GL + NLQA W+S  M  PK+     ++R V D++A+N
Sbjct:  631 NVFRRGVRGDPPANVPPMTVKLKTGAKPVKARLRTYNPDKTKWLTTCLAALVALGLVYVNLQAIWASAIMLTPKRSGDKVTYRFVGDFRAVN 722          
BLAST of mRNA_D-dichotoma_M_contig1008.148.1 vs. uniprot
Match: A0A2P4XAG4_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XAG4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.820e-12
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    4 NAFRRALRGDSPARVEPMRVQLKPGASAVKAKPRRYDPVKSSWLASCVAALLAFGLEFRNLQAEWSSPAMAVPK----KDSFRLVSDYKALN 267
            + +R  L  D PA+VEP+R++LK GASAVK++PR+Y P   ++L    A L+  G  + N  + W+SP + V K    KD +R   DY+ +N
Sbjct:  474 DVWRLDLGNDPPAKVEPLRIRLKSGASAVKSRPRQYPPAVRTFLKDFNAKLVDLGWVYENPNSRWASPVLPVRKAGVSKDEYRQTCDYRLVN 565          
BLAST of mRNA_D-dichotoma_M_contig1008.148.1 vs. uniprot
Match: A0A6A3KVD3_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KVD3_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.670e-10
Identity = 33/88 (37.50%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   10 FRRALRGDSPARVEPMRVQLKPGASAVKAKPRRYDPVKSSWLASCVAALLAFGLEFRNLQAEWSSPAMAV--PKKDSFRLVSDYKALN 267
            +R  L  D PARV P++++LK GA+  + K R+Y P KS++L S    L+  G  + N ++ W  PA+ +  P  D FR  +DY+  N
Sbjct:  550 WRLELGNDPPARVPPLKIKLKAGATPYRCKVRQYSPSKSAFLESFNRKLVELGWVYENRESRWCCPALPIKKPNIDEFRQTTDYRPFN 637          
BLAST of mRNA_D-dichotoma_M_contig1008.148.1 vs. uniprot
Match: A0A6A4Z9W7_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9W7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 6.800e-10
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 1
Query:    4 NAFRRALRGDSPARVEPMRVQLKPGASAVKAKPRRYDPVKSSWLASCVAALLAFGLEFRNLQAEWSSPAMAVPKKD--SFRLVSDYKALN 267
            + FR     D P +VEP++VQLKPG+  VK+  RRY P   ++L   V  L   GL +RN ++ W++    VPKKD    R+  D + +N
Sbjct:  470 DVFRLKFGRDPPVKVEPLKVQLKPGSVPVKSGLRRYPPTHVAYLEKHVRELEEAGLVYRNTRSRWAAAPRIVPKKDPGDLRMTIDSRPIN 559          
BLAST of mRNA_D-dichotoma_M_contig1008.148.1 vs. uniprot
Match: H3H656_PHYRM (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H656_PHYRM)

HSP 1 Score: 62.8 bits (151), Expect = 1.750e-9
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query:    4 NAFRRALRGDSPARVEPMRVQLKPGASAVKAKPRRYDPVKSSWLASCVAALLAFGLEFRNLQAEWSSPAMAVPKKD 231
            ++FR     D P RV PM+V+LKPGA+ ++A+PRRY P   ++L      L+  GL F+N ++ W+S    V KK+
Sbjct:  641 DSFRLEFGHDPPVRVAPMQVRLKPGATPIRAQPRRYSPNDRAFLDRHTTTLMKHGLIFKNHRSRWASAPRIVKKKE 716          
BLAST of mRNA_D-dichotoma_M_contig1008.148.1 vs. uniprot
Match: H3H4S7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4S7_PHYRM)

HSP 1 Score: 62.8 bits (151), Expect = 1.780e-9
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query:    4 NAFRRALRGDSPARVEPMRVQLKPGASAVKAKPRRYDPVKSSWLASCVAALLAFGLEFRNLQAEWSSPAMAVPKKD 231
            ++FR     D P RV PM+V+LKPGA+ ++A+PRRY P   ++L      L+  GL F+N ++ W+S    V KK+
Sbjct:  643 DSFRLEFGHDPPVRVAPMQVRLKPGATPIRAQPRRYSPNDRAFLDRHTTTLMKHGLIFKNHRSRWASAPRIVKKKE 718          
BLAST of mRNA_D-dichotoma_M_contig1008.148.1 vs. uniprot
Match: A0A225UZC5_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UZC5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.130e-8
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 1
Query:   10 FRRALRGDSPARVEPMRVQLKPGASAVKAKPRRYDPVKSSWLASCVAALLAFGLEFRNLQAEWSSPAMAV--PKKDSFRLVSDYKALN 267
            +R  L  D PA+V P+ V+LK GA++ + KPR+Y P   ++L    A L   G  + N Q+ W+S A+ V  P  + +R  SDY+++N
Sbjct:  487 WRLKLGNDPPAKVPPLLVRLKDGATSQRCKPRQYPPHLRAFLRDFNAELERMGWVYENPQSRWASAALPVKKPGSEEYRQTSDYRSVN 574          
BLAST of mRNA_D-dichotoma_M_contig1008.148.1 vs. uniprot
Match: A0A225UMF8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UMF8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 9.550e-8
Identity = 29/86 (33.72%), Postives = 49/86 (56.98%), Query Frame = 1
Query:   16 RALRGDSPARVEPMRVQLKPGASAVKAKPRRYDPVKSSWLASCVAALLAFGLEFRNLQAEWSSPAMAV--PKKDSFRLVSDYKALN 267
            +A+  D PA+V P+ ++LK GA+  + KPR+Y P    +L      L+  G  F N  + W+ PA+    P K+++R  +DY+ +N
Sbjct:    4 KAVENDPPAKVPPLDIRLKKGATPCRCKPRQYPPRLREFLKEFNDELVHLGWVFENPPSRWACPALPAHKPGKENYRQTNDYQPVN 89          
BLAST of mRNA_D-dichotoma_M_contig1008.148.1 vs. uniprot
Match: A0A329RAD8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RAD8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.300e-7
Identity = 32/91 (35.16%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    4 NAFRRALRGDSPARVEPMRVQLKPGASAVKAKPRRYDPVKSSWLASCVAALLAFGLEFRNLQAEWSSPAMAVPK---KDSFRLVSDYKALN 267
            + +R A+  D PA+VEP+RV LKP A   ++ PR+Y  +++ ++   V +L+  GL  +N  + W+   + V K    D FRL  DY  +N
Sbjct:   86 DVWRAAVGPDPPAKVEPLRVTLKPDAVPYRSPPRKYASLQAQFIREYVKSLVDNGLVEQNNSSRWAWAVVPVHKPGTSDKFRLTIDYSLIN 176          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1008.148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JCK9_9PHAE1.090e-2357.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE1.430e-2051.09Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A2P4XAG4_9STRA1.820e-1240.22Reverse transcriptase domain-containing protein n=... [more]
A0A6A3KVD3_9STRA3.670e-1037.50Reverse transcriptase domain-containing protein n=... [more]
A0A6A4Z9W7_9STRA6.800e-1038.89Reverse transcriptase domain-containing protein n=... [more]
H3H656_PHYRM1.750e-940.79Reverse transcriptase domain-containing protein n=... [more]
H3H4S7_PHYRM1.780e-940.79Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A225UZC5_9STRA1.130e-837.50Reverse transcriptase domain-containing protein n=... [more]
A0A225UMF8_9STRA9.550e-833.72Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A329RAD8_9STRA1.300e-735.16Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1008contigD-dichotoma_M_contig1008:64952..65221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue2.7e-10
Seed eggNOG ortholog164328.Phyra85982
EggNOG free text desc.transposition
EggNOG OGs2RRYP@2759,3QHSD@4776,COG2801@1
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927485.4298472-CDS-D-dichotoma_M_contig1008:64951..652211622927485.4298472-CDS-D-dichotoma_M_contig1008:64951..65221Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1008 64952..65221 +
1690797995.3500566-CDS-D-dichotoma_M_contig1008:64951..652211690797995.3500566-CDS-D-dichotoma_M_contig1008:64951..65221Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1008 64952..65221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1008.148.1prot_D-dichotoma_M_contig1008.148.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1008 64952..65221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1008.148.1

>prot_D-dichotoma_M_contig1008.148.1 ID=prot_D-dichotoma_M_contig1008.148.1|Name=mRNA_D-dichotoma_M_contig1008.148.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=90bp
VNAFRRALRGDSPARVEPMRVQLKPGASAVKAKPRRYDPVKSSWLASCVA
ALLAFGLEFRNLQAEWSSPAMAVPKKDSFRLVSDYKALN*
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mRNA from alignment at D-dichotoma_M_contig1008:64952..65221+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1008.148.1 ID=mRNA_D-dichotoma_M_contig1008.148.1|Name=mRNA_D-dichotoma_M_contig1008.148.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=270bp|location=Sequence derived from alignment at D-dichotoma_M_contig1008:64952..65221+ (Dictyota dichotoma ODC1387m male)
GTCAACGCGTTTCGTCGAGCGCTGCGGGGTGATTCCCCTGCGCGCGTGGA GCCCATGCGTGTCCAGCTGAAGCCTGGAGCGTCCGCGGTGAAGGCCAAGC CGCGGCGTTACGATCCAGTGAAGTCGAGTTGGTTGGCGTCGTGTGTGGCG GCTCTTTTGGCGTTCGGGCTCGAGTTTCGGAACTTGCAGGCGGAGTGGTC TAGTCCAGCCATGGCAGTGCCGAAAAAAGACTCGTTCCGCCTGGTGAGCG ACTACAAGGCGTTGAACTAA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1008:64952..65221+

>mRNA_D-dichotoma_M_contig1008.148.1 ID=mRNA_D-dichotoma_M_contig1008.148.1|Name=mRNA_D-dichotoma_M_contig1008.148.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=540bp|location=Sequence derived from alignment at D-dichotoma_M_contig1008:64952..65221+ (Dictyota dichotoma ODC1387m male)
GTCAACGCGTTTCGTCGAGCGCTGCGGGGTGATTCCCCTGCGCGCGTGGA
GCCCATGCGTGTCCAGCTGAAGCCTGGAGCGTCCGCGGTGAAGGCCAAGC
CGCGGCGTTACGATCCAGTGAAGTCGAGTTGGTTGGCGTCGTGTGTGGCG
GCTCTTTTGGCGTTCGGGCTCGAGTTTCGGAACTTGCAGGCGGAGTGGTC
TAGTCCAGCCATGGCAGTGCCGAAAAAAGACTCGTTCCGCCTGGTGAGCG
ACTACAAGGCGTTGAACTAAGTCAACGCGTTTCGTCGAGCGCTGCGGGGT
GATTCCCCTGCGCGCGTGGAGCCCATGCGTGTCCAGCTGAAGCCTGGAGC
GTCCGCGGTGAAGGCCAAGCCGCGGCGTTACGATCCAGTGAAGTCGAGTT
GGTTGGCGTCGTGTGTGGCGGCTCTTTTGGCGTTCGGGCTCGAGTTTCGG
AACTTGCAGGCGGAGTGGTCTAGTCCAGCCATGGCAGTGCCGAAAAAAGA
CTCGTTCCGCCTGGTGAGCGACTACAAGGCGTTGAACTAA
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