mRNA_D-dichotoma_M_contig110.884.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig110.884.1
Unique NamemRNA_D-dichotoma_M_contig110.884.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig110.884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig110contigD-dichotoma_M_contig110:571372..572110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size638
Cds size387
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig110.884.1prot_D-dichotoma_M_contig110.884.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig110 571372..571758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927610.9054003-CDS-D-dichotoma_M_contig110:571371..5717581622927610.9054003-CDS-D-dichotoma_M_contig110:571371..571758Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 571372..571758 +
1690798060.5147696-CDS-D-dichotoma_M_contig110:571371..5717581690798060.5147696-CDS-D-dichotoma_M_contig110:571371..571758Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 571372..571758 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927610.9163358-UTR-D-dichotoma_M_contig110:571758..5719371622927610.9163358-UTR-D-dichotoma_M_contig110:571758..571937Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 571759..571937 +
1690798060.5280828-UTR-D-dichotoma_M_contig110:571758..5719371690798060.5280828-UTR-D-dichotoma_M_contig110:571758..571937Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 571759..571937 +
1622927610.9263737-UTR-D-dichotoma_M_contig110:572039..5721101622927610.9263737-UTR-D-dichotoma_M_contig110:572039..572110Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 572040..572110 +
1690798060.5373673-UTR-D-dichotoma_M_contig110:572039..5721101690798060.5373673-UTR-D-dichotoma_M_contig110:572039..572110Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 572040..572110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig110.884.1

>prot_D-dichotoma_M_contig110.884.1 ID=prot_D-dichotoma_M_contig110.884.1|Name=mRNA_D-dichotoma_M_contig110.884.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=129bp
LRFLSASVFWLSNHSLISRWNRHFRLLHTPVLWRRALPRHTAGLSSRATK
CPRCNVRVPVVCCQLPTRGTRFSRLISGRNCRFAHRPSVGQLRFITDHHR
VTSRHWWNSRFGGRPLGSVARHCWASSG*
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mRNA from alignment at D-dichotoma_M_contig110:571372..572110+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig110.884.1 ID=mRNA_D-dichotoma_M_contig110.884.1|Name=mRNA_D-dichotoma_M_contig110.884.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=739bp|location=Sequence derived from alignment at D-dichotoma_M_contig110:571372..572110+ (Dictyota dichotoma ODC1387m male)
CTTCGCTTCCTCAGCGCCTCCGTCTTCTGGCTCAGCAATCACTCCCTCAT
CTCTCGATGGAACAGACATTTTCGCCTCCTCCACACCCCCGTCCTCTGGC
GCAGAGCTCTTCCTCGCCATACTGCGGGTCTGAGCTCTCGTGCGACCAAG
TGTCCGAGGTGCAACGTCCGGGTCCCTGTTGTATGTTGCCAACTGCCGAC
GCGTGGAACGCGCTTTAGCCGTCTCATCAGCGGACGTAACTGCCGGTTCG
CTCACCGGCCCAGCGTTGGGCAGCTCAGGTTCATCACTGACCATCACCGG
GTCACCAGCAGGCACTGGTGGAATAGCCGGTTCGGCGGCCGGCCTCTCGG
GTCCGTCGCCAGGCATTGCTGGGCCAGCAGTGGGTGAAGTCGGTGCATCA
AGGGACACCTCCGGCCCAGCACCCGACTCGCGATTTGCAACGTCGAGCCC
ACCGTCATCTCTGTCGCTGTCGCTGTCGGATCCACTGTCGCCGCTGCTGC
TTCCAGCTCCGCCATCGCTATCACTGCTTGAAGTCTCCAAGCGCTCGTCG
CTCGAAGTCTCTGGAGGCTCCGGTGCATCGGAACACCTTCCATTACAGCA
GTCACAGCGCTTCATCCCCCCTCGCTTGGACCTCCCCCCTTGTTCCGTGC
TGGGAGCCTCCACCGGAGTCTTCAACGCGGCAGAAATCACGGGGGCCTCC
CAGGACACGTCGCGCGTGATCACGACCGTGCCCGTCTCT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig110:571372..572110+

>mRNA_D-dichotoma_M_contig110.884.1 ID=mRNA_D-dichotoma_M_contig110.884.1|Name=mRNA_D-dichotoma_M_contig110.884.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=774bp|location=Sequence derived from alignment at D-dichotoma_M_contig110:571372..572110+ (Dictyota dichotoma ODC1387m male)
CTTCGCTTCCTCAGCGCCTCCGTCTTCTGGCTCAGCAATCACTCCCTCAT
CTCTCGATGGAACAGACATTTTCGCCTCCTCCACACCCCCGTCCTCTGGC
GCAGAGCTCTTCCTCGCCATACTGCGGGTCTGAGCTCTCGTGCGACCAAG
TGTCCGAGGTGCAACGTCCGGGTCCCTGTTGTATGTTGCCAACTGCCGAC
GCGTGGAACGCGCTTTAGCCGTCTCATCAGCGGACGTAACTGCCGGTTCG
CTCACCGGCCCAGCGTTGGGCAGCTCAGGTTCATCACTGACCATCACCGG
GTCACCAGCAGGCACTGGTGGAATAGCCGGTTCGGCGGCCGGCCTCTCGG
GTCCGTCGCCAGGCATTGCTGGGCCAGCAGTGGGTGACTTCGCTTCCTCA
GCGCCTCCGTCTTCTGGCTCAGCAATCACTCCCTCATCTCTCGATGGAAC
AGACATTTTCGCCTCCTCCACACCCCCGTCCTCTGGCGCAGAGCTCTTCC
TCGCCATACTGCGGGTCTGAGCTCTCGTGCGACCAAGTGTCCGAGGTGCA
ACGTCCGGGTCCCTGTTGTATGTTGCCAACTGCCGACGCGTGGAACGCGC
TTTAGCCGTCTCATCAGCGGACGTAACTGCCGGTTCGCTCACCGGCCCAG
CGTTGGGCAGCTCAGGTTCATCACTGACCATCACCGGGTCACCAGCAGGC
ACTGGTGGAATAGCCGGTTCGGCGGCCGGCCTCTCGGGTCCGTCGCCAGG
CATTGCTGGGCCAGCAGTGGGTGA
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