mRNA_D-dichotoma_M_contig1099.846.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1099.846.1
Unique NamemRNA_D-dichotoma_M_contig1099.846.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1099.846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1099contigD-dichotoma_M_contig1099:216949..217434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size486
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1099.846.1prot_D-dichotoma_M_contig1099.846.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1099 217026..217370 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927603.0955586-UTR-D-dichotoma_M_contig1099:216948..2170251622927603.0955586-UTR-D-dichotoma_M_contig1099:216948..217025Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1099 216949..217025 +
1690798057.6574605-UTR-D-dichotoma_M_contig1099:216948..2170251690798057.6574605-UTR-D-dichotoma_M_contig1099:216948..217025Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1099 216949..217025 +
1622927603.117572-UTR-D-dichotoma_M_contig1099:217370..2174341622927603.117572-UTR-D-dichotoma_M_contig1099:217370..217434Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1099 217371..217434 +
1690798057.6788337-UTR-D-dichotoma_M_contig1099:217370..2174341690798057.6788337-UTR-D-dichotoma_M_contig1099:217370..217434Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1099 217371..217434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927603.1068802-CDS-D-dichotoma_M_contig1099:217025..2173701622927603.1068802-CDS-D-dichotoma_M_contig1099:217025..217370Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 217026..217370 +
1690798057.6675038-CDS-D-dichotoma_M_contig1099:217025..2173701690798057.6675038-CDS-D-dichotoma_M_contig1099:217025..217370Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 217026..217370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1099.846.1

>prot_D-dichotoma_M_contig1099.846.1 ID=prot_D-dichotoma_M_contig1099.846.1|Name=mRNA_D-dichotoma_M_contig1099.846.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=115bp
MHSLRGERRVHLGLLLLSRLKADQAPRVSASQKLRFAPHASLSISKGQYQ
ATRLKFEWAVRVSCLGSVISGPNATNGSGELRRVVDGGCGGCRGGGGGVY
RMISIGNGGHESVS*
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mRNA from alignment at D-dichotoma_M_contig1099:216949..217434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1099.846.1 ID=mRNA_D-dichotoma_M_contig1099.846.1|Name=mRNA_D-dichotoma_M_contig1099.846.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=486bp|location=Sequence derived from alignment at D-dichotoma_M_contig1099:216949..217434+ (Dictyota dichotoma ODC1387m male)
GGGGACGATCGTACCGCGACTGTCAGGGACGCTGGCGGTGATGCTGTGGG
CGTCCCTAAAGATAGACGACGTTTGTCATGCATTCTCTTAGAGGCGAGAG
GCGAGTACACCTTGGGCTACTTCTGCTATCGAGACTCAAGGCAGACCAGG
CCCCCAGGGTTTCCGCGTCCCAGAAGCTTAGATTCGCTCCGCACGCTTCA
CTCTCGATTTCGAAGGGTCAGTACCAAGCAACGCGCTTGAAATTTGAGTG
GGCTGTGAGGGTCAGTTGTCTTGGAAGCGTCATTTCTGGGCCCAACGCGA
CAAACGGCAGCGGCGAATTACGGCGGGTAGTAGATGGTGGTTGCGGCGGT
TGTCGTGGTGGTGGTGGTGGCGTCTATCGGATGATCTCGATCGGCAATGG
AGGACACGAAAGCGTCAGTTGAACGGCGGTACCTTGTGTCTCTGCCCAAG
AGGACCTTTTGACGGGTGATATGTGATATATCCTAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1099:216949..217434+

>mRNA_D-dichotoma_M_contig1099.846.1 ID=mRNA_D-dichotoma_M_contig1099.846.1|Name=mRNA_D-dichotoma_M_contig1099.846.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=690bp|location=Sequence derived from alignment at D-dichotoma_M_contig1099:216949..217434+ (Dictyota dichotoma ODC1387m male)
ATGCATTCTCTTAGAGGCGAGAGGCGAGTACACCTTGGGCTACTTCTGCT
ATCGAGACTCAAGGCAGACCAGGCCCCCAGGGTTTCCGCGTCCCAGAAGC
TTAGATTCGCTCCGCACGCTTCACTCTCGATTTCGAAGGGTCAGTACCAA
GCAACGCGCTTGAAATTTGAGTGGGCTGTGAGGGTCAGTTGTCTTGGAAG
CGTCATTTCTGGGCCCAACGCGACAAACGGCAGCGGCGAATTACGGCGGG
TAGTAGATGGTGGTTGCGGCGGTTGTCGTGGTGGTGGTGGTGGCGTCTAT
CGGATGATCTCGATCGGCAATGGAGGACACGAAAGCGTCAGTTGAATGCA
TTCTCTTAGAGGCGAGAGGCGAGTACACCTTGGGCTACTTCTGCTATCGA
GACTCAAGGCAGACCAGGCCCCCAGGGTTTCCGCGTCCCAGAAGCTTAGA
TTCGCTCCGCACGCTTCACTCTCGATTTCGAAGGGTCAGTACCAAGCAAC
GCGCTTGAAATTTGAGTGGGCTGTGAGGGTCAGTTGTCTTGGAAGCGTCA
TTTCTGGGCCCAACGCGACAAACGGCAGCGGCGAATTACGGCGGGTAGTA
GATGGTGGTTGCGGCGGTTGTCGTGGTGGTGGTGGTGGCGTCTATCGGAT
GATCTCGATCGGCAATGGAGGACACGAAAGCGTCAGTTGA
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