mRNA_D-dichotoma_M_contig1099.844.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1099.844.1
Unique NamemRNA_D-dichotoma_M_contig1099.844.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1099.844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1099contigD-dichotoma_M_contig1099:198501..204257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-00_005760.1
Hectar predicted targeting categoryother localisation
Exons3
Model size299
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1099.844.1prot_D-dichotoma_M_contig1099.844.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1099 198529..204257 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927602.8735812-UTR-D-dichotoma_M_contig1099:198500..1985281622927602.8735812-UTR-D-dichotoma_M_contig1099:198500..198528Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1099 198501..198528 +
1690798057.565764-UTR-D-dichotoma_M_contig1099:198500..1985281690798057.565764-UTR-D-dichotoma_M_contig1099:198500..198528Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1099 198501..198528 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927602.8907604-CDS-D-dichotoma_M_contig1099:198528..1985621622927602.8907604-CDS-D-dichotoma_M_contig1099:198528..198562Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 198529..198562 +
1690798057.5789378-CDS-D-dichotoma_M_contig1099:198528..1985621690798057.5789378-CDS-D-dichotoma_M_contig1099:198528..198562Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 198529..198562 +
1622927602.9027522-CDS-D-dichotoma_M_contig1099:199471..1996561622927602.9027522-CDS-D-dichotoma_M_contig1099:199471..199656Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 199472..199656 +
1690798057.5872164-CDS-D-dichotoma_M_contig1099:199471..1996561690798057.5872164-CDS-D-dichotoma_M_contig1099:199471..199656Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 199472..199656 +
1622927602.9149234-CDS-D-dichotoma_M_contig1099:204206..2042571622927602.9149234-CDS-D-dichotoma_M_contig1099:204206..204257Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 204207..204257 +
1690798057.5983849-CDS-D-dichotoma_M_contig1099:204206..2042571690798057.5983849-CDS-D-dichotoma_M_contig1099:204206..204257Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 204207..204257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1099.844.1

>prot_D-dichotoma_M_contig1099.844.1 ID=prot_D-dichotoma_M_contig1099.844.1|Name=mRNA_D-dichotoma_M_contig1099.844.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=90bp
MLPRSGENRYYGHVTGGRVKGAIDGKGSTNVTVQDAANGQPSGGTYAPRG
EDHERKDSSSAEARLLQLAEETKVRHHDNEETHRAASNVV
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mRNA from alignment at D-dichotoma_M_contig1099:198501..204257+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1099.844.1 ID=mRNA_D-dichotoma_M_contig1099.844.1|Name=mRNA_D-dichotoma_M_contig1099.844.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=5757bp|location=Sequence derived from alignment at D-dichotoma_M_contig1099:198501..204257+ (Dictyota dichotoma ODC1387m male)
GCTCATCGTCTCGCCTGCTGCACCATCCATGTTACCTCGGTCTGGCGAAA
ACAGATATTACGGTGAGGATAATCACGATCGAAGGTTGCACGGTCACCGG
ACAGACGACGCATGTCAGCTCCCTCGGAGAGGAAGAACTTGGTAGTTCAC
GTGTCTACATATCTATTTTAAAAAATCTGCCTGTTTTGCTTCTGCTTCTT
CCAGACTCATTCCAGACTCATTCCAGACTCATTCCAGACTCATTCCAGAC
TCATTTCAGACTCATTCCAGACTCATTTCAGACTCATTCCAAACTCATTC
CAGACTCATTCCAGACTCATTCCAGACCCATTCCAATCGTCGACCTACAC
GAAATATGTGTCTCTCCTGTACCTATGCGTCGCACGTGTCAGTGTTTGCA
ATGTCATCATGTGGGTGCGTCAGGACCGAGAGATGTATGCACCGCCAGAC
GAATACTCGCCCGAAGCATCACTCCATGGATCGGGCTTGAATTAAGCGAA
CTCTCCAGCTCTGTGGCCCTTTATCTCCTCTGGCATGTTGTTGCCGGACG
TGAAGTGCAGGAACACCAACGTCCTCACGCATGGAAGTCATAGAGAAACC
CGAATAATTTGTCTATCTATACTTCCAAGCCCCAGTTCATTCATTGACTT
CACACGTTTCCAAGCAGGTGACTTTGCTTCACCACCCCGTCATGTAGATC
CATATGGGTTGAGCTCAATCCGAAGCAGGTAGACAACTCCGTCCTCTCCT
TTCTTTCCTTTCTTCCCGCGTTCCCGCTCATCCCTTCTACTTCGCCGTCT
GCGATCATGCGGTGAAAACGTCTCGAAAGCCATTCCTGACGGCAGCGAGT
ACATCTCGCTTCCCAGGATCACTTTAGCCGATTTTGGTGGTAGCGATCGA
AGGCTTTCACAACGATGGTTGTGACCCGCACGATGAAGGTGACGGAAATG
ACCTAGCTGATATCTCGGCAGGGCATGTCACTGGCGGGCGAGTCAAGGGT
GCTATTGACGGAAAAGGGAGCACGAATGTCACAGTCCAGGATGCAGCAAA
TGGGCAGCCCTCCGGTGGTACGTACGCGCCCCGTGGTGAAGACCATGAGC
GCAAGGACTCCTCCTCGGCGGAGGCAAGGCTTCTTCAGCTTGCGGAGGAG
ACCAAGGTACGCAAGGTTTCGATCCCATGGCTCCCTTTTCCGTCTCTTCC
GTGACTCCAAAGGCAGGAATCCTGAAGAATTGATTGGACGTCCGCCCGGG
CAGCTTCGTGACTTGACTTGACGTGACTTGACGTGACGTGACATGCATCG
TGTCGTGTCGTGTCGTGTCGTGTCGTGTCGTGTCGCGTCGTGTCGTGTCG
AGTCGAGTCGAGTCGAGTCGGGTCGAACTTAGCAAGGTCGCTTCAAACGT
CAGAGACAAAGACTCCATTCTGATGCAGCGGAATTCGAAAGGTTTGCGTC
CTATTGGACGTCCTTTTACCATCCAACAGGGCTCGAATCATCTGCGATGG
TAGGGGTGTTCAGCTTGGAGGGGGGACGGCTTACGATTTGCTTGCTCTCC
GCGTGGAACGAAGAGGGTGATGGAGAAAGAAGAGAAAGAGGAAAAAGAAA
TAGGAGAAAGAAAGAAGAGAAAGAGAGGAAAAGGAAAGAGGAGAAAGAAA
ACATTTTCCTATGTTGAATCATACAAGTTCCTGTCTTGCTCCACTTCAAC
ATTAGACTGTGGGCCTATTTTGAAGAACCTGATTGGAGGGATGTTGGAGA
GGCGCCGGTTTCCTCCTTCATAACTCGTCAGACTGCATCTGCAGCAGCAC
TAACAACATGCCTCTATTCAAGCGCGCCATCCTTCAGCGCAATAAGTTCA
AGTTCACATATATACATTCTCCGTTTTTTTATTCTATACAGTCAAACCTC
CAGATTAAGACACCACCTCATTAAGGTCCCCTCCAGATTAAGGCACCCCC
AAGGGTCGTACTAGCCCGAGGAATTTCAGCTCCCCTTGGGTTTCGATAAT
ACAGAAATTCATGACATAACATGAATATCAATAGTATGCCTGTGCGGCAA
GAATATCGCACTATACAGACAAAGTATGTGTGGTAGTTTGCTGTGTTTAA
TTCCGAAATTACTTGGCCATCCCTTGGCTAGATTAAGGCACCTTCTAGAT
TAAGGCACGTCCCACGGGTGTCTTAATGTGGAGGTTCGACTGTACTATAA
TATAGGGTTTCCCCTAGCGCGAATTCGGTTTGCAAAGTTTCGGTTTCAGT
AGCATCGTGAGTTCCGTGTGCAGAGATGGATCTTCGCATCTAGTGGGGAA
AAAATCGGATTTAAGTATGGCCTCGACATGTCGATAGGGTCTACAGCGCG
GTGAGCCAACTAGCACGCACGCCTTCCACAACAAGGTGAACCCCTTCGTA
ACTATGGGCAGATTTAACGGCGCGATCCCAGCTGCTCACAGATGGGATCC
TGGCCTGACTACCGTTCGATTTGACCCTCCGCGACCATGGGGCGTTCAGT
CGCGGGTTACCTATTCCGATTGATCATTTCCGATTGATCATACCAACCCT
AATCTAATCTTGCAACCAAAACCCACGCTAGCACCATCTTCCTTCGTGCA
CACACACCTCCTTCTTCCAGTTGCTATAATATTGTACAGGGTTTTCATTT
GCAAGATGACCTAAAAATCTTGTGTACGGGGAGGCATGGGACTGGAATGA
GTACGATAAAGATCAAGCTCTGCGAAAGATTTGCATTGGGTTTACTAATG
AATGCAGTGACATCCGCCATCGCCGCGGTAGAATAATGATCGGTCGATTT
AATTTTATGCTTACGACCACTATCTGATGCAGTGCGGCGAGGAAAACCCT
GTACAGTCGAGTCCCCTGACTAAGGCATACTCCCAAATTCAGATTAAGGT
CACCACAAGGATCGCACTAGCTGGAGAAAATTCAGGCCCCCGTGGGTTTT
GATGGTGTAGTTATTCATGACATAGCAAGTAATCCACGACATAGCATGGT
TGCACATGATCAAGGAACATCTTCACTACATAGAGGTAGAATGTGTGGTA
GTTTGCGGTGTTCCATGGACGCAACGAGAGGGCCGACCCTTGGTTAGATT
AAGGCCACCCCTCAGATTAAGGTCACCCCCAGGGGCATGCCTTAATATAT
AGGGGTTCAACTTTAATAACTACTCGTTGCACATCCTCCTTGTGAGTAGC
ATCAAGCAGCTTCGGTCGTCTCCTTGGTTCATTATCCCTCCTCTCGGTGC
CTCGGTGCCTCGGTGCCTTCAAGCCTATACCACCACCACCGTCACCACCA
TCTTATCATCGTCCAAAGCAAGCTCTTGGCAGTTTCTTCGCACTCGTTCA
TCAGCCCAGGCTCAGCCAGGTAGATTCTTGTGCACCTATGCGTCGAGCGG
CGAAATTGGTAGCTCTCGTGGACACGAGAAATATAAGCTACAGTACAGTA
GAGTACAGTACAGGAGGCGTCCGTGAACGTTTTATCTTGGATGTAGCATA
AGTGACCTCTTCTTGAAAGATCCATGAAGAGACGATCCCCCAGGTCCTAT
GATGATGCCCATTCTGCCTCCCAAACTCAGGAGGAACGCCAGAACTAAAC
AGTCATTTTCGCTAGGATTAGTATGATGCCATAGACCCCATTCCCACGGT
CGACCCCATTTTCAAAAATCGCTCGTAGACTATGTTGTCAATATATTGTG
AAAGAAAGTGGTGAGTAAACATTTGAGAAGTGAGACGATATCGTAGGGTT
TGGCCTGTTGGTGGGGAATTAGTATGTTTGGAATATCCCACTGCTGCCTG
TTACAGTCACACGTTTTGAAATTGATAGCCACAGAACTGTTTGTTCACAG
TTAAAAAATATGTGTGCAGATTTCGGCGTCAAACCCGAAATGAATGACGA
ATGACATTTAATCACCATAAGATATTTTATCTTGAATGAAGAATGGAATA
ATAGTCGTTTCTAATAATTCTATTCTCACGCCTTTTTTTTTCTGGCGAAG
GTTGCTGACGCATTTGGGATGAGTAAGGGACGCCATCACGAGGTTTGGCG
GAGAAATTCGTTAAGCCGAGTGTCGTATAGAGTATTAGATACTGATGACC
AAATCATATCGAGATTTTTACGGAGATGCGCCGCACAAAACGAAATTGTA
CCAGAAAAGCATCTTCACTACGCCGTAAAAAAATGGTTGCACCTCCTTTT
TTGAGCTACATAACGTACCTAGGCGAGGTTCTTGTAAGCCCGTAGAGCAC
GTGACGTGGCGTTTACTCCTGCGTTGGCTGATTAGTGTGATGCTTTCAGA
TTCACAACACTCAATACACAGCAAGAGCTATCCAATATGAAGGTTTTCTA
GTTTATCGGCTAAACCAGCTTGTATGAGTCGCTAAACTTTTCCACGGTCG
TTAAGCGGCAACCACATGCAAATTTGCTCGAGGATGATACAGGAGTTTAT
GCTGACATATGGCCTTCCATTTGATTCCGAGAAGCAGTGCTTACGGGAGT
AATGATTTGAAACCATAAACCTCGGAGTTTCATTTTAGCTATTGTTTACC
ATTAGATAGGTCGCTAAGGATTAGACATGAAACGGTTTCTCGAATTCTCG
GGTAATTTGAATTTCGGATAAACTGGGTTAAATACGTTTGTTTTCCAAAC
GTGCCATTTCAACGGAATCCTTTTATCTGGTCATGAAACTTGATCGATGT
GGGATCTATTCAATCGCCAGAAAAGAACAGGCACCATTTAAAACAAAAAT
CGAGTCAATGCTGGCTCCCAGAATTTATTTGAACGATGGACTCCACGGTG
TAATTTAGGGTTTCCCTGCCACGATTTCAGCTGCAAACTACATACTGTGC
TTTAGGTTTGGTCGTCCGAAAACTCCTGTTGGTAAGAAATGACCCCTTTA
TCTTCTATTAGGGCTGGGAAAATGACGATATAGACTCCTTGTCGTTCAAA
GTGAGCTAGCGAGGAGGTTACCAAGCACTCTGCTGGTCGCTATATCTAGG
GAGCTCTTCATACAAATCGGGTTTACTAGAACGGGAACCCTCACTTGGGT
TGAGCTCTGAAATTTATCTTGGATTAAGTACAGAATACTTCGGGGTAATT
TATTTCGCAATGGTAGTCTGCGCCCCAGTGAAGAAAACGGAACTATATCG
TTTATACCAAACTCGTCCATGACTCACACATCCAAACTCATCCTGATTTC
CCGCCATGAAACCCTTATCAAACTTTCTTGTGAGTGATGATCGAATATAA
CAAGATGAGATCATGTAGCGCACCACATCATGAATTAGACTACGTGACAA
CAAATAAGATTCAATTAGGGTCCATGTCTCAATTATAAACTTGTGTTCCG
ACATTGCCAAAATGTTGTTTGTCGCGGTGAGGTTCCCATTTTTGACAAAC
CACTCACGGTTGTATCTCCGCCTTGAATGACTTCACCTTCAACATTTGTG
ACTAGTCGCACAACGCACACGGTAAGAAAACCCTGTGCCTCCATGCTGGA
AAGCAATTGGTACAATAGTATCTGCGGACGATAAAACAAAATATGGACGG
GAAACTACCTTCCTACAGTACCAGCTACTAACTTACCGGATGTAGCTCTC
ACGTAAATTTGGTTAACTTAATCTGCACTGCGTAGCCGTGTTCGTGCTGC
AGATGCTGTGGCGGAGGAAATTAACAGTTTTTGTGTATCGGTCGCCATCG
GCGCAGGTTCGTCATCATGATAACGAGGAAACGCATAGAGCAGCATCGAA
CGTGGTC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1099:198501..204257+

>mRNA_D-dichotoma_M_contig1099.844.1 ID=mRNA_D-dichotoma_M_contig1099.844.1|Name=mRNA_D-dichotoma_M_contig1099.844.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=540bp|location=Sequence derived from alignment at D-dichotoma_M_contig1099:198501..204257+ (Dictyota dichotoma ODC1387m male)
ATGTTACCTCGGTCTGGCGAAAACAGATATTACGATGTTACCTCGGTCTG
GCGAAAACAGATATTACGGGCATGTCACTGGCGGGCGAGTCAAGGGTGCT
ATTGACGGAAAAGGGAGCACGAATGTCACAGTCCAGGATGCAGCAAATGG
GCAGCCCTCCGGTGGTACGTACGCGCCCCGTGGTGAAGACCATGAGCGCA
AGGACTCCTCCTCGGCGGAGGCAAGGCTTCTTCAGCTTGCGGAGGAGACC
AAGGGCATGTCACTGGCGGGCGAGTCAAGGGTGCTATTGACGGAAAAGGG
AGCACGAATGTCACAGTCCAGGATGCAGCAAATGGGCAGCCCTCCGGTGG
TACGTACGCGCCCCGTGGTGAAGACCATGAGCGCAAGGACTCCTCCTCGG
CGGAGGCAAGGCTTCTTCAGCTTGCGGAGGAGACCAAGGTTCGTCATCAT
GATAACGAGGAAACGCATAGAGCAGCATCGAACGTGGTCGTTCGTCATCA
TGATAACGAGGAAACGCATAGAGCAGCATCGAACGTGGTC
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