mRNA_D-dichotoma_M_contig1088.754.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1088.754.1
Unique NamemRNA_D-dichotoma_M_contig1088.754.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig1088.754.1 vs. uniprot
Match: A0A817Y2J9_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817Y2J9_9BILA)

HSP 1 Score: 85.9 bits (211), Expect = 1.670e-16
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 3
Query:   15 EQTAEMLFPAGEKNSQDYHKNMDCDVFFTWLEKRLWPTFETLYKDHKMILILDNAPYHHGMEDGWKSPLKMSKTECAALLSELGIGSIQVTR 290
            EQTAEM++ A + N  DYHKNM+   F  WL   L+PTF+ L+   KMIL+LDNA YHH     +  P KM+K+E A  L    I +I+V R
Sbjct:  298 EQTAEMIWSADKANG-DYHKNMNSTNFLLWLNNYLFPTFQLLFPSKKMILVLDNASYHHARGPDYIDPHKMNKSEVAEKLLSYNIDNIEVER 388          
BLAST of mRNA_D-dichotoma_M_contig1088.754.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.730e-16
Identity = 62/165 (37.58%), Postives = 85/165 (51.52%), Query Frame = 3
Query:   15 EQTAEMLFPAGEKNSQDYHKNMDCDVFFTWLEKRLWPTFETLYKDHKMILILDNAPYHHGMEDGWKSPLKMSKTECAALLSELGIGSIQVTRKDDKTE--KDEKITFDVPCKGRTFVNAP----KGSTIPEVRQATFMALRDMRPDDILTRAERWFKKNDAGYML 491
            E+TAEML+ A ++ + DYH  M   +F  WLE+RL P F+  Y + KMIL+LDNA YHHG +     P   SK    ALL +     I V R+   +   + +K TF VP  G TF  A     KG + PEV  AT    +   P  ++ + E +   N  G+ L
Sbjct:  352 EETAEMLWQA-KRATGDYHDAMTDKMFMEWLERRLAPAFKAKYGNKKMILVLDNASYHHGYDAEVGVPESNSKGYNTALLRKYKCRKITVEREVTSSAGVRSKKYTFQVPATG-TFPQANSKCGKGVSGPEVALATRAFFQLKHPTKLMEKVETFM--NGRGWQL 512          
BLAST of mRNA_D-dichotoma_M_contig1088.754.1 vs. uniprot
Match: A0A815R6A0_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A815R6A0_9BILA)

HSP 1 Score: 81.3 bits (199), Expect = 4.960e-15
Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 3
Query:    3 VISDEQTAEMLFPAGEKNSQDYHKNMDCDVFFTWLEKRLWPTFETLYKDHKMILILDNAPYHHGMEDGWKSPLKMSKTECAALLSELGIGSIQVTR 290
             I  E+TAEM++ A + N  +YHKNMD   F  WL   L+PTF+ L+   KMIL+LDNA YHH     +  P KM+K+E    L    I +I+V R
Sbjct:  115 AIGVEKTAEMIWFADKANG-NYHKNMDSANFLLWLHDHLFPTFQLLFSSKKMILVLDNASYHHARALDFIDPYKMNKSEVTEKLLFYNIDNIEVER 209          
BLAST of mRNA_D-dichotoma_M_contig1088.754.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.540e-13
Identity = 58/160 (36.25%), Postives = 82/160 (51.25%), Query Frame = 3
Query:    6 ISDEQTAEMLFPAGEKNSQDYHKNMDCDVFFTWLEKRLWPTFETL--YKDHKMILILDNAPYHHGMEDGWKSPLKMSKTECAALLSELGIGSIQVTRKDDKTEKDEKITFDVPCK-GRTFV--NAPKGSTIPEVRQATFMALRDMRPDDILTRAERWFKK 470
            + DE+TAE L+ A +    DYH  M   +F  WLE RL P +  +  ++  KMIL+LDNA YHHG +   K P   +K     LL + G  SI+V RK+ +    E   F+VP + G +F   N   G +  EV  AT   +R   P+ +  R   + KK
Sbjct:  379 MEDEETAEFLWQA-KLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFEGKKMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRKFGAKSIRVKRKEGEQGFVEH-NFEVPSEPGSSFPAGNREGGVSRAEVATATREYIRLNYPERLEERVVTFMKK 536          
BLAST of mRNA_D-dichotoma_M_contig1088.754.1 vs. uniprot
Match: A0A6H5KEG4_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG4_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.110e-13
Identity = 53/138 (38.41%), Postives = 72/138 (52.17%), Query Frame = 3
Query:    6 ISDEQTAEMLFPAGEKNSQDYHKNMDCDVFFTWLEKRLWPTFETL--YKDHKMILILDNAPYHHGMEDGWKSPLKMSKTECAALLSELGIGSIQVTRKDDKTEKDEKITFDVPCK-GRTFV--NAPKGSTIPEVRQAT 404
            + DE+TAE L+ A +    DYH  M   +F  WLE RL P +  +  +K  +MIL+LDNA YHHG +   K P   +K     LL   G  SI+V RK+ +    E   F+VP + G +F   N   G +  EV  AT
Sbjct:    1 MEDEETAEFLWQA-KLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVE-YNFEVPTEPGSSFPAGNREGGVSRAEVATAT 136          
BLAST of mRNA_D-dichotoma_M_contig1088.754.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.510e-13
Identity = 56/160 (35.00%), Postives = 81/160 (50.62%), Query Frame = 3
Query:    6 ISDEQTAEMLFPAGEKNSQDYHKNMDCDVFFTWLEKRLWPTFETL--YKDHKMILILDNAPYHHGMEDGWKSPLKMSKTECAALLSELGIGSIQVTRKDDKTEKDEKITFDVPCK-GRTFV--NAPKGSTIPEVRQATFMALRDMRPDDILTRAERWFKK 470
            + DE+TAE L+ A +    DYH  M   +F  WLE RL P +  +  +K  +MIL+LDNA YHHG +   K P   +K     LL   G  SI+V RK+ +    E+  F+VP + G +F   N   G +  EV  AT   +    P+ +  R   + +K
Sbjct:  240 MEDEETAEFLWQA-KLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVKRKEGEQGVVEE-NFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRK 397          
BLAST of mRNA_D-dichotoma_M_contig1088.754.1 vs. uniprot
Match: A0A6H5KRM6_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRM6_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.240e-12
Identity = 54/160 (33.75%), Postives = 82/160 (51.25%), Query Frame = 3
Query:    6 ISDEQTAEMLFPAGEKNSQDYHKNMDCDVFFTWLEKRLWPTFETL--YKDHKMILILDNAPYHHGMEDGWKSPLKMSKTECAALLSELGIGSIQVTRKDDKTEKDEKITFDVPCK-GRTFV--NAPKGSTIPEVRQATFMALRDMRPDDILTRAERWFKK 470
            + DE+TAE+++ A +    DYH  M   +F  WLE RL P +  +  +K ++MIL+LDNA YHHG +   K P   +K +   LL   G   I+V RK+ +    E   F+VP + G +F   N   G +  EV  AT   +    P+ +  R   + +K
Sbjct:  287 MEDEETAEIMWQA-KLAKGDYHAAMTDSMFMEWLEHRLSPAYNAILEFKGNRMILVLDNASYHHGFDAEVKVPETNTKKQNVDLLRMFGAKPIRVRRKEGEQGSVE-YNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRK 444          
BLAST of mRNA_D-dichotoma_M_contig1088.754.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.320e-12
Identity = 56/160 (35.00%), Postives = 80/160 (50.00%), Query Frame = 3
Query:    6 ISDEQTAEMLFPAGEKNSQDYHKNMDCDVFFTWLEKRLWPTFETL--YKDHKMILILDNAPYHHGMEDGWKSPLKMSKTECAALLSELGIGSIQVTRKDDKTEKDEKITFDVPCK-GRTFV--NAPKGSTIPEVRQATFMALRDMRPDDILTRAERWFKK 470
            + DE+TAE L+ A +    DYH  M   +F  WLE RL P +  +  +K  +MIL+LDNA YHHG +   K P   +K     LL   G  SI+V RK+ +    E   F+VP + G +F   N   G +  EV  AT   +    P+ +  R   + +K
Sbjct:  345 MEDEETAEFLWQA-KLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVE-YNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRK 502          
BLAST of mRNA_D-dichotoma_M_contig1088.754.1 vs. uniprot
Match: A0A6H5KUM1_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM1_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.020e-12
Identity = 55/160 (34.38%), Postives = 79/160 (49.38%), Query Frame = 3
Query:    6 ISDEQTAEMLFPAGEKNSQDYHKNMDCDVFFTWLEKRLWPTFETL--YKDHKMILILDNAPYHHGMEDGWKSPLKMSKTECAALLSELGIGSIQVTRKDDKTEKDEKITFDVPCK-GRTFV--NAPKGSTIPEVRQATFMALRDMRPDDILTRAERWFKK 470
            + DE+TAE L+ A +    DYH  M   +F  WLE RL P +  +  +K  +MIL+LDNA YHHG +   K P   +K     LL   G  SI+V RK+ +        F+VP + G +F   N   G +  EV  AT   +    P+ +  R   + +K
Sbjct:  128 MKDEETAEFLWQA-KLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGRQMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGE---QGVYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRK 283          
BLAST of mRNA_D-dichotoma_M_contig1088.754.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.430e-12
Identity = 55/160 (34.38%), Postives = 79/160 (49.38%), Query Frame = 3
Query:    6 ISDEQTAEMLFPAGEKNSQDYHKNMDCDVFFTWLEKRLWPTFETL--YKDHKMILILDNAPYHHGMEDGWKSPLKMSKTECAALLSELGIGSIQVTRKDDKTEKDEKITFDVPCK-GRTFV--NAPKGSTIPEVRQATFMALRDMRPDDILTRAERWFKK 470
            + DE+TAE L+ A +    DYH  M   +F  WLE RL P +  +  +K  +MIL+LDNA YHHG +   K P   +K     LL   G  SI+V RK+ +        F+VP + G +F   N   G +  EV  AT   +    P+ +  R   + +K
Sbjct:   75 MEDEETAEFLWQA-KLAKGDYHAAMTDSMFMEWLEHRLNPAYNAIPEFKGKRMILVLDNASYHHGFDAQVKLPESNTKKHNVDLLRMFGAKSIRVKRKEGE---QGVYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRK 230          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1088.754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A817Y2J9_9BILA1.670e-1647.83Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
D8LQ25_ECTSI1.730e-1637.58Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A815R6A0_9BILA4.960e-1544.79Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
D8LNM6_ECTSI1.540e-1336.25DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KEG4_9PHAE3.110e-1338.41DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKL0_9PHAE6.510e-1335.00DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KRM6_9PHAE1.240e-1233.75DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KIM5_9PHAE1.320e-1235.00DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5KUM1_9PHAE2.020e-1234.38DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KHE7_9PHAE2.430e-1234.38DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1088contigD-dichotoma_M_contig1088:154269..154759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size493
Cds size462
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927587.5430293-UTR-D-dichotoma_M_contig1088:154268..1542971622927587.5430293-UTR-D-dichotoma_M_contig1088:154268..154297Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1088 154269..154297 +
1690798050.2178698-UTR-D-dichotoma_M_contig1088:154268..1542971690798050.2178698-UTR-D-dichotoma_M_contig1088:154268..154297Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1088 154269..154297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927587.554947-CDS-D-dichotoma_M_contig1088:154297..1547591622927587.554947-CDS-D-dichotoma_M_contig1088:154297..154759Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1088 154298..154759 +
1690798050.2253523-CDS-D-dichotoma_M_contig1088:154297..1547591690798050.2253523-CDS-D-dichotoma_M_contig1088:154297..154759Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1088 154298..154759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1088.754.1prot_D-dichotoma_M_contig1088.754.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1088 154298..154759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1088.754.1

>prot_D-dichotoma_M_contig1088.754.1 ID=prot_D-dichotoma_M_contig1088.754.1|Name=mRNA_D-dichotoma_M_contig1088.754.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=154bp
MLFPAGEKNSQDYHKNMDCDVFFTWLEKRLWPTFETLYKDHKMILILDNA
PYHHGMEDGWKSPLKMSKTECAALLSELGIGSIQVTRKDDKTEKDEKITF
DVPCKGRTFVNAPKGSTIPEVRQATFMALRDMRPDDILTRAERWFKKNDA
GYML
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mRNA from alignment at D-dichotoma_M_contig1088:154269..154759+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1088.754.1 ID=mRNA_D-dichotoma_M_contig1088.754.1|Name=mRNA_D-dichotoma_M_contig1088.754.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=491bp|location=Sequence derived from alignment at D-dichotoma_M_contig1088:154269..154759+ (Dictyota dichotoma ODC1387m male)
TCGTGATTTCTGATGAGCAGACGGCAGAGATGCTGTTTCCTGCGGGGGAA AAGAACTCGCAAGATTACCATAAAAACATGGATTGCGACGTTTTCTTCAC ATGGCTGGAAAAGCGCTTGTGGCCAACGTTCGAGACTTTGTATAAGGATC ACAAAATGATCCTCATCTTGGACAACGCTCCGTACCATCACGGAATGGAG GACGGGTGGAAAAGCCCATTGAAGATGAGCAAGACGGAGTGCGCTGCCTT GCTTTCCGAATTAGGGATCGGATCCATTCAAGTCACTCGGAAAGATGACA AGACGGAGAAAGACGAGAAGATCACTTTCGACGTACCCTGCAAAGGGAGA ACATTCGTCAACGCTCCGAAAGGGTCCACAATCCCTGAGGTCCGGCAGGC CACTTTCATGGCACTTCGAGACATGCGCCCAGATGATATTCTTACCCGCG CGGAAAGGTGGTTCAAGAAAAATGATGCGGGATACATGTTG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1088:154269..154759+

>mRNA_D-dichotoma_M_contig1088.754.1 ID=mRNA_D-dichotoma_M_contig1088.754.1|Name=mRNA_D-dichotoma_M_contig1088.754.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=924bp|location=Sequence derived from alignment at D-dichotoma_M_contig1088:154269..154759+ (Dictyota dichotoma ODC1387m male)
ATGCTGTTTCCTGCGGGGGAAAAGAACTCGCAAGATTACCATAAAAACAT
GGATTGCGACGTTTTCTTCACATGGCTGGAAAAGCGCTTGTGGCCAACGT
TCGAGACTTTGTATAAGGATCACAAAATGATCCTCATCTTGGACAACGCT
CCGTACCATCACGGAATGGAGGACGGGTGGAAAAGCCCATTGAAGATGAG
CAAGACGGAGTGCGCTGCCTTGCTTTCCGAATTAGGGATCGGATCCATTC
AAGTCACTCGGAAAGATGACAAGACGGAGAAAGACGAGAAGATCACTTTC
GACGTACCCTGCAAAGGGAGAACATTCGTCAACGCTCCGAAAGGGTCCAC
AATCCCTGAGGTCCGGCAGGCCACTTTCATGGCACTTCGAGACATGCGCC
CAGATGATATTCTTACCCGCGCGGAAAGGTGGTTCAAGAAAAATGATGCG
GGATACATGTTGATGCTGTTTCCTGCGGGGGAAAAGAACTCGCAAGATTA
CCATAAAAACATGGATTGCGACGTTTTCTTCACATGGCTGGAAAAGCGCT
TGTGGCCAACGTTCGAGACTTTGTATAAGGATCACAAAATGATCCTCATC
TTGGACAACGCTCCGTACCATCACGGAATGGAGGACGGGTGGAAAAGCCC
ATTGAAGATGAGCAAGACGGAGTGCGCTGCCTTGCTTTCCGAATTAGGGA
TCGGATCCATTCAAGTCACTCGGAAAGATGACAAGACGGAGAAAGACGAG
AAGATCACTTTCGACGTACCCTGCAAAGGGAGAACATTCGTCAACGCTCC
GAAAGGGTCCACAATCCCTGAGGTCCGGCAGGCCACTTTCATGGCACTTC
GAGACATGCGCCCAGATGATATTCTTACCCGCGCGGAAAGGTGGTTCAAG
AAAAATGATGCGGGATACATGTTG
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