mRNA_D-dichotoma_M_contig1087.748.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig1087.748.1 vs. uniprot
Match: A0A6H5KD03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD03_9PHAE) HSP 1 Score: 1070 bits (2768), Expect = 0.000e+0 Identity = 662/1256 (52.71%), Postives = 781/1256 (62.18%), Query Frame = 2
Query: 518 GYALSSYDQINKPRPHWEIVAEVVSKGATMPKKRLVPLLRELCIRIGDNTVCDGALFGALLNIIRSAKEGDWDGKTVRLVHFFVRGMVTAQGDTDGRMLGSHWEGRGITPRQILEAVECFREESEHRSALRKSPAFQTIATLCQLAAEARIGGQTSPIEVLRDATLAPLQSFQAQERPEKGGK--GRAQRQQRLEAFNESLQVSASIFSALRRCPSLARDRAALPSVLSGCCSENSLAARHSFALLADQAAANPAMVSQALLKKGMLLPTTVGMLQAPGGPASSGGEEPNLGDSLACVYYLRALKALAFAQSLDNTMRLDTYRTMVSSVSDARHRVALEAMQCLLDHPRLAWQLLVDAQRESRDVDIFRRVVDRIKLCVEEATSSPASAGSGDVXXXXXXXXXXXXASRASVMDTAPQSATG----------------GGGAAEQGVEKSREQGGTRCNWALAHAACRVCRVVGRTFQVAISYQTIQSQNR-------DQSATVTPKGAAAAL---RRGGSGA-----PFVGAR----SDLEASGQGDGGGGEPFASLDASTGSGTGGGSVFNLLGLPPSPPSRSGIMGGASAW--SGGVRTIWENEITGDV---MAGQVVEEQNTAAIRDLCKTLQQHKLLESPHLHVRSLALEAMFLLVPDPSPVDPQLRGLWDWLQQKVAQCPSTLPDSVLSELVDTLLTRVHCSAASREEVIPIALALTESFMCQVQSDEMGRCLLRAWCQCVVYGGRSREAVLQSVYRVLDWNVSVPT----TALSVAVIGRSDGITLGDGGGGQSPAAHTRRALSEDWTRLTVPVARGGEAAESAVKPSSSVSPSEESHPNSPDPQTVSTDARQQGMIASRMAKSVSRIGSRDGGLKGGSKSRASVVGKEEAPRXXXXXXXXXHPGGPKESPRLAYLKARGTWTRLKRSAFWFLGEYCCPLTGTRRDRGTPKTIRPEPDPSGAVDHGQAATAETGVPGKGVAGQGDTSSALVDLLGVWTN-TPGNSRDDAAAVEVDTFSAGIPPSGSAAATVVTDLRGIEDEAGSKAIPHQVVAAMNSATVSMLLRLKHAAMFEDLQTRHTCASALCKIALRFAEPVRFDVYCFLKGLSHAADIFPVLAL--DDQPEVMDVTVASRWGVVTEEPAIEEYWREQEEFAEKLEAAGAFGIADVVTPVLDYLDCFYVSAGSQAPSTAKPDAEGSSETLLSTSLLGDDPAKPTGGVHQPPMSEESLELYRRLLDNGQGAAAPGP 4138
GYA+SSY+ +N+PR +W + AEVV+KGATMPKKRLVPLLRELCIRIGD TVCDGA FGALL I+ SAKEGDWDGK VRLVHFFVRGMVT QGDT+GR+LGSHWEGRGIT RQIL+A+ECFR+ESEHRS++R+ PAF T+ATLCQLA+ + +GGQ SP+EVLR+ TL PL+S QAQERPE+GGK GRA RQ R EAF ESLQVSA+IFSA+RRCP+LARD++ LP VL GCCSEN LAARH+FA+LAD A +P +VSQ LL K ML+PTTVGMLQAPGG A+SGGE PNL DSLACVYYLRA+KALAFA++LD+TMRLD YRTMVSSVSDARHRVALEAMQCLLDHPR AW+LLV+AQRESRD DIFRRVVDRIK+CVEEAT+ PA+A + S + AP + G G A G ++ CNWALAHAACRVCRVVGRTFQVAISYQT+Q+QNR S+TV AA + R GSG P V AR L ASG+ G +P G GS FNLLGLPPSP RSGI SAW + G +A + AAIRDLC+ LQQH+LLESPHLHVRSLALEAMFLLVPDPSP+DPQLRGLWDWLQQ+V QCPSTLPD+VLSELVDTLLTRV CSA SREEVIPIALALTESFM QV S+EMGRC+LRAWCQC YGGR+RE+VLQSVYR+LD ++++P A + A R+ ++GD GG A H R SEDWTR Q +ST Q G P E+PRL YL+A+ TRLKRSAFWFLGEYC LTG + P P +G + LL VWT+ P ++ + AG+ G+ EA ++A H VV+ MN AT+S+L+RLKHAAMFED QTR TCASALCKIALR +P+RFD YCFL+GL+ +A +FP++ D+ P E +E +WREQE E++E AGA+GI +VVTPVLDYL C Y + PD+EG T +S G P + T + M + L +YRR+LD + AAPGP
Sbjct: 76 GYAISSYELVNRPRAYWTVAAEVVAKGATMPKKRLVPLLRELCIRIGDYTVCDGAFFGALLVILGSAKEGDWDGKAVRLVHFFVRGMVTVQGDTEGRVLGSHWEGRGITQRQILDAIECFRQESEHRSSVRQIPAFHTVATLCQLASVSGVGGQPSPVEVLRETTLTPLRSLQAQERPERGGKTKGRALRQ-RQEAFEESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAARHAFAILADLAMKSPDVVSQTLLSKAMLVPTTVGMLQAPGGLAASGGE-PNLADSLACVYYLRAIKALAFAEALDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPR-AWELLVNAQRESRDADIFRRVVDRIKVCVEEATA-PATAAAAATAAHDGSTAASRPGSPTELPPAAPADLSNKKKKLXXXXXXXXXXAGNGPAGVGASEAY------CNWALAHAACRVCRVVGRTFQVAISYQTMQNQNRAGVDGSSGGSSTVLASPAATSSVGGERRGSGTSGPRPPSVNARHGFSEGLLASGRD---GSQPVTPE-------VGTGSAFNLLGLPPSPAPRSGITRAPSAWGPTAGXXXXXXXXXXXXXXRRLARDGGRDGRAAAIRDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGRARESVLQSVYRILDRSIALPPDNPRAAFASAANNRASTGSVGDRGGA---ARHVRGMASEDWTR-----------------------------------QPISTGGAQ---------------------------------------------------GDPSETPRLKYLRAKSAATRLKRSAFWFLGEYCRQLTGAPAESSQNHDQTPPPAKTGGNE----------------------------LLDVWTSPVPSPTKGG-----MGRLPAGLGDMGA--------------EASAEA--HPVVSGMNGATISILMRLKHAAMFEDFQTRSTCASALCKIALRLPDPIRFDAYCFLQGLADSAALFPLVPSRQDNDPGCSG------------EGLLEGHWREQEALFERIENAGAYGIREVVTPVLDYLGCLY----------SMPDSEG---TRPGSSQDGSLPTERTEVGQRSAMETKLLGVYRRVLD--EHGAAPGP 1146
BLAST of mRNA_D-dichotoma_M_contig1087.748.1 vs. uniprot
Match: D7FJG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG9_ECTSI) HSP 1 Score: 1019 bits (2634), Expect = 0.000e+0 Identity = 638/1205 (52.95%), Postives = 754/1205 (62.57%), Query Frame = 2
Query: 605 MPKKRLVPLLRELCIRIGDNTVCDGALFGALLNIIRSAKEGDWDGKTVRLVHFFVRGMVTAQGDTDGRMLGSHWEGRGITPRQILEAVECFREESEHRSALRKSPAFQTIATLCQLAAEARIGGQTSPIEVLRDATLAPLQSFQAQERPEKGGK--GRAQRQQRLEAFNESLQVSASIFSALRRCPSLARDRAALPSVLSGCCSENSLAARHSFALLADQAAANPAMVSQALLKKGMLLPTTVGMLQAPGGPASSGGEEPNLGDSLACVYYLRALKALAFAQSLDNTMRLDTYRTMVSSVSDARHRVALEAMQCLLDHPRLAWQLLVDAQRESRDVDIFRRVVDRIKLCVEEATSSPASAGSGDVXXXXXXXXXXXXASRASVMDTAPQSA------------------TGGGGAAEQGVEKSREQGGTRCNWALAHAACRVCRVVGRTFQVAISYQTIQSQNRDQSATVTPKGAAAALRRGGSGAPFVGARSDLEASGQGDGGGGEPFASLDASTGSGTGGGSVFNLLGLPPSPPSRSGIMGGASAWSGGVRTIWENEITGDVMAGQVVEEQNTAAIRDLCKTLQQHKLLESPHLHVRSLALEAMFLLVPDPSPVDPQLRGLWDWLQQKVAQCPSTLPDSVLSELVDTLLTRVHCSAASREEVIPIALALTESFMCQVQSDEMGRCLLRAWCQCVVYGGRSREAVLQSVYRVLDWNVSVPT----TALSVAVIGRSDGITLGDGGGGQSPAAHTRRALSEDWTRLTVPVARGGEAAESAVKPSSSVSPSEESHPNSPDPQTVSTDARQQGMIASRMAKSVSRIGSRDGGLKGGSKSRASVVGKEEAPRXXXXXXXXXHPGGPKESPRLAYLKARGTWTRLKRSAFWFLGEYCCPLTGTRRDRGTPKTIRPEPDPSGAVDHGQAATAETGVPGKGVAGQGDTSSALVDLLGVWTN-TPGNSRDDAAAVEVDTFSAGIPPSGSAAATVVTDLRGIEDEAGSKAIPHQVVAAMNSATVSMLLRLKHAAMFEDLQTRHTCASALCKIALRFAEPVRFDVYCFLKGLSHAADIFPVLAL--DDQPEVMDVTVASRWGVVTEEPAIEEYWREQEEFAEKLEAAGAFGIADVVTPVLDYLDCFYVSAGSQAPSTAKPDAEGSSETLLSTSLLGDDPAKPTGGVHQPPMSEESLELYRRLLDNGQGAAAPGP 4138
MPKKRLVPLLRELCIRIGD TVCDGA FGALL I+RSAKEGDWDGK VRLVHFFVRGMVT QGDT+GR+LGSHWEGRGI+PRQI++A+ECFR+ESEHRS++R+ PAF T+ATLCQLA+ + +GGQ SP+EVLR+ TL PL+S QAQERPE+GGK GRA RQ R EAF ESLQVSA+IFSA+RRCP+LARD++ LP VL GCCSEN LAARH+FA+LAD A +P +VSQ LL K ML+PTTVGMLQAPGG AS+GGE PNL DSLACVYYLRA+KALAFA +LD+TMRLD YRTMVSSVSDARHRVALEAMQCLLDHPR AW+LLV+AQRESRD DIFRRVVDRIK+CVEEAT+ PA+A + S + AP G G A G ++ CNWALAHAACRVCRVVGRTFQVAI R + V+ AA A AP AR +AS + SV + PP+R+ T + +VVEEQNTAAIRDLC+ LQQH+LLESPHLHVRSLALEAMFLLVPDPSP+DPQLRGLWDWLQQ+V QCPSTLPD+VLSELVDTLLTRV CSA SREEVIPIALALTESFM QV S+EMGRC+LRAWCQC YGGR+RE+VLQSVYR+LD ++++P TA + A R+ ++GD GG A H R SEDWTR P++ GG S D Q G I + GS G + ++G +EA R G P E+PRL YL+ + TRLKRSAFWFLGEYCC LTG + P P AETG G+ +LL VWT+ P ++ G P+G L + EA ++A H VV+ MN AT+S+L+RLKHAAMFED QTR TCASALCKIALR +P+RFD YCFL+GL+ +A +FP++ D+ P E +E +WREQE E++E AGA+GI +VVTPVLDYL C Y + PD+E ET S+S G P + T + M + L +YRR+LD Q AAPGP
Sbjct: 1 MPKKRLVPLLRELCIRIGDYTVCDGAFFGALLVILRSAKEGDWDGKAVRLVHFFVRGMVTVQGDTEGRVLGSHWEGRGISPRQIIDAIECFRQESEHRSSVRQIPAFHTVATLCQLASVSGVGGQPSPVEVLRETTLTPLRSLQAQERPERGGKTKGRALRQ-RQEAFEESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAARHAFAILADLAMKSPDVVSQTLLSKAMLVPTTVGMLQAPGGLASAGGE-PNLADSLACVYYLRAIKALAFAGALDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPR-AWELLVNAQRESRDADIFRRVVDRIKVCVEEATA-PATAAAAATAAHDGSTAASRPGSPTELPPAAPADLGHKKXXXXXXXXXXXXXXXAGNGPAGVGASEAH------CNWALAHAACRVCRVVGRTFQVAIR------PCRTKIELVSTAAAAVA-------APSWQARLRQQASAE-----------------------SV-----VAAGPPARA-----------------PRPSTPATASRKVVEEQNTAAIRDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGRARESVLQSVYRILDRSIALPPDNPRTAFASAANDRASTGSVGDRGGA---ARHVRGMASEDWTRQ--PISTGGAQG--------------------------SEDGSQPGRIPPTIVSGGGSSGS--SGFATSLNGVSMILGGDEASRWGNAGGGGAG-GDPSETPRLKYLRTKSAATRLKRSAFWFLGEYCCQLTGAPAESSQNPDQSPPP-------------AETG---------GN------ELLDVWTSPVPSPTKG----------GTGRLPAG---------LGDMGAEASAEA--HPVVSGMNGATISILMRLKHAAMFEDFQTRSTCASALCKIALRLPDPIRFDAYCFLQGLADSAALFPLVPSRQDNDPGCSG------------EGLLEGHWREQEALFERIENAGAYGIREVVTPVLDYLGCLY----------SMPDSE---ETRPSSSQDGSLPTERTEVGQRSAMETKLLGVYRRVLD--QHGAAPGP 1027
BLAST of mRNA_D-dichotoma_M_contig1087.748.1 vs. uniprot
Match: A0A835Z8W3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8W3_9STRA) HSP 1 Score: 187 bits (476), Expect = 5.200e-44 Identity = 208/660 (31.52%), Postives = 267/660 (40.45%), Query Frame = 2
Query: 1106 ESLQVSASIFSALRRCPSLARDRAALPSVLSGCCSENSLAARHSFALLADQAAA---------------------------------------------------------NPAMVSQALLKKGMLLPTTVGMLQAPGGPASSGGEE----PNLGDSLACVYYLRALKALAFAQSLDNTMRLDTYRTMVSSVSDARHRVALEA------------------------------------MQCLLDHPRLAWQLLVDAQRESRDVDIFRRVVDRIKLCVEEATSSPASAGSGDVXXXXXXXXXXXXASRASVMDTAPQSATGGGGAAEQGVEKSREQGGTRC--------------------NWALAHAACRVCRVVGRTFQVAISYQTIQSQ--NRDQSATVTPKGAAAALRRGGSGAPFVGARSDLEASGQGDGGGGEPFASLDASTGSGTGGGSVFNLLGLPPSPPSRSGIMGGASAWSGGVRTIWENEITGDVMAGQVVEEQNTAAIRDLCKTLQQHKLLESPHLHVRSLALEAMFLLVPDPSPVDPQLRGLWDWLQQKVAQCPSTLPDSVLS----------------ELVDTLLTRVHC-----------------------SAASREEVIPIALALTESFMCQVQSDEMGRCLL 2611
E L +S + SA+RR +L R + LP VL C S N++ ARH+FA+L +QAA+ +P V++ + +L PTTV A++G E PNL D LACVYYLR LK L FA L+ RLD YRT+ +SVSD RHRVALEA MQCL+DH R AW LLVDAQRESRD D+FRRVVD ++ C+ A G+ XXXXXXXXXXXX +W LAHAACR R VG+T Q AIS++T+ ++ S A F GA G P L S SG G + LL LP +P S + S T IT E N AAIRDLC+ + H L+ PH H AMFLLVPDPS DP+L+ +W +Q K+ CP++LP++ L LV +L+ R+ S ASR ++P ALA+ ESF+ QV +D +GR L+
Sbjct: 400 EHLLLSRVVLSAVRRSAALRRRASLLPRVLEACRSPNAVTARHAFAVLLEQAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSMVLAEXXXXXXXXXXXXXXXAMDPKAVAEGVYP--LLQPTTV---------AAAGALEIHNQPNLEDPLACVYYLRVLKTLVFAPELEAQSRLDFYRTIANSVSDTRHRVALEASDVFNLNFNPVPHTVAGATAVGSLTAQSWNYRGTAAMQCLMDHER-AWTLLVDAQRESRDADLFRRVVDALRRCLAAAAGVDLLPGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGAPHWPLAHAACRAARAVGQTLQKAISFETMAARAXXXXXXXXXXXXXXXXXXXXXXSEAVFFGA--------------GSPSGRLPVSPRSG--GSPLSPLLDLPSTPHSVAAXXXXXXXXS----TYNSPHIT----TADAAEASNMAAIRDLCRAISGHGFLDCPHRH-------AMFLLVPDPSHRDPELQEMWAEVQMKMEACPASLPEASLGAPHGGVPASLSEASLVHLVTSLMARMEACXXXXXXXXXXXXXXXXXXXXXXSEASRGAIVPAALAIAESFVRQVPTDAVGRALV 1016 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1087.748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig1087.748.1 >prot_D-dichotoma_M_contig1087.748.1 ID=prot_D-dichotoma_M_contig1087.748.1|Name=mRNA_D-dichotoma_M_contig1087.748.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=1331bp MRASRSLRHIVGLQTMPTTSDVPRGRGLPPKSPAAQPAGSLPRPSSGVWAback to top mRNA from alignment at D-dichotoma_M_contig1087:184954..217270+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig1087.748.1 ID=mRNA_D-dichotoma_M_contig1087.748.1|Name=mRNA_D-dichotoma_M_contig1087.748.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=32317bp|location=Sequence derived from alignment at D-dichotoma_M_contig1087:184954..217270+ (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig1087:184954..217270+ >mRNA_D-dichotoma_M_contig1087.748.1 ID=mRNA_D-dichotoma_M_contig1087.748.1|Name=mRNA_D-dichotoma_M_contig1087.748.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=7986bp|location=Sequence derived from alignment at D-dichotoma_M_contig1087:184954..217270+ (Dictyota dichotoma ODC1387m male)back to top |