mRNA_D-dichotoma_M_contig1086.735.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig1086.735.1 vs. uniprot
Match: D8LET4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LET4_ECTSI) HSP 1 Score: 328 bits (840), Expect = 7.020e-102 Identity = 188/387 (48.58%), Postives = 250/387 (64.60%), Query Frame = 1
Query: 7 IMSAYEDNRFKGVDPFPAYIREMGVTSGLLCLYGCITLVQGVYDIVPATIDGQDWSGDSDTYPPVVRHLAALVQIVFSLTSIAVGFQWLVSGTGSKSWARLSVWLSLLSVFTFAVTVSYVSFLAAKDEEESYFIPYIYHPSKTENRVVATLGALGYIAYAGNNFGALIHLNIKMWRFLSESWTGYNRAFYRSLFLLFGLFVFVAGAAQLILGVYVYDEVEDQRLRQ----IVLVGPYHLTYPEISMTVGSLQVVLSFYIFRRAMTTPPDDGSACQA-GQDTFRKFAWFVLLLNISAQVLTQAAFAAGKTGDEDPIMEPVDSLSPMAGFAAMVLVLVMGLGLFPIYLDAMYFTTPADVPG----GCISAAPVREKGAVDEERKVETMS 1140
+ S Y DNR G+DPF Y +EM VT+G+LCL+G I LV GVYD+ +TIDGQDWSG+SD +PPVVRHLAAL+QI FS+ S+AVGFQ+LV G W +S++ S S+FTFAV+V+Y FL+AK+ + FIP Y S +ENR VA++ A+ Y+AYA NNF AL+HLN KM+ + S+ W G+NR FY++ + GL +AG QL LG YV+D+V++ RL I L GP +TY +++ G+ Q+VL YI RA T P GS A G F+ AWFVL+L+I QVL+Q ++ T D AGFAA + V+GLGLFP+YLDAMY+TTP + G +SA + KG + EERKVE+ S
Sbjct: 1 MSSGYGDNRLLGLDPFGRYTKEMSVTAGMLCLFGFINLVPGVYDLCLSTIDGQDWSGNSDVFPPVVRHLAALIQITFSIVSMAVGFQYLVCGGACSHWTMISLFCSFFSLFTFAVSVAYTGFLSAKESFD--FIPSEYGASTSENRSVASMIAIAYVAYAINNFFALVHLNYKMFMYQSDQWVGFNRGFYKTALMFVGLLTLLAGTVQLALGAYVFDKVDEDRLSSPLGAIFLSGPLLVTYSRLAIAFGAFQLVLGCYIMVRA-TQKPSSGSGENAKGLQAFQFAAWFVLVLSICIQVLSQVTMSSTSTNIVDRY----------AGFAAQAVAYVVGLGLFPMYLDAMYYTTPETIDQNDFCGDVSAWS-KGKGDI-EERKVESAS 372
BLAST of mRNA_D-dichotoma_M_contig1086.735.1 vs. uniprot
Match: A0A7S2UB49_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UB49_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.390e-15 Identity = 82/316 (25.95%), Postives = 138/316 (43.67%), Query Frame = 1
Query: 196 PVVRHLAALVQIVFSLTSIAVGFQWLVSGTGSKSWARLSVWLSLLSVFTFAVTVSYVSFLAAKDEEESYFIPYIYHPSKTENRVVATLGALGYIAYAGNNFGALIHLNIKMWRFLSESWTGYNRAFYRSLFLLFGLFVFVAGAAQLILGVYVYDEVEDQRLRQ-IVLVGPYHLTYPEISMTVGSLQVVLSFYIFRRAMTTPPDDGSACQAGQD--TFRKFAWFVLLLNISAQVLTQAAFAAGKTGDEDPIMEPVDSLSPMAGFAAMVLV-LVMGLGLFPIYLDAMYFTTPADVPGGCISAAPVREKGAVDEERKVE 1131
P+ +A Q F ++ G+ LV G KS + + L+ + +S + AK FIP Y PS+ + VA +G LG IA+ G+L + ++ + S N ++Y L+ V +AG +QL LG +V + + L + V VG Y + +PEIS+ VG +Q+++ F+ R M G+D +F+ + + + +++ Q A+A G PM G AA ++ GL P YLDA TTPA++P S +++ K++
Sbjct: 65 PLSNLIAGCAQAFFGTIAMFTGYLSLVYDWGHKSLTLALIIATQLAWLPYLTALSGI----AKGARNDSFIPSAYDPSEADINFVAAMGMLGIIAHGAAYIGSLAFMEFALYAYQSGKTNDRNSSYYLGRSGLYNFLVVLAGFSQLALGSFVLHSIGNGPLTEGPVNVGVYTIYFPEISVFVGLVQILVGFFGLARRM-------GKLVGGKDDHSFQIACGIMWICMLVLELMVQVAYAPG----------------PMMGGAAPTRACIIFGLAFMPAYLDAKTRTTPAELPPSYYSMEDTSSDMDKNDDEKIQ 353
BLAST of mRNA_D-dichotoma_M_contig1086.735.1 vs. uniprot
Match: K0TGC2_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGC2_THAOC) HSP 1 Score: 79.7 bits (195), Expect = 3.210e-12 Identity = 80/328 (24.39%), Postives = 134/328 (40.85%), Query Frame = 1
Query: 79 VTSGLLCLYGCITLVQGVYDIVPATIDGQDWSGDSDTYPPVVRHLAALVQIVFSLTSIAVGFQWLVSGTGSKSWARLSVWLSLLSVFTFAVTVSYVSFLAAKDEEESYFIPYIYHPSKTENRVVATLGALGYIAYAGNNFGALIHLNIKMWRFLSESWTGYNRAFYRSLFLLFGLFVFVAGAAQLILGVYVYDEVEDQRLRQIVLVGPYHLTYPEISMTVGSLQVVLSFYIFRRAMTTPPDDGSACQAGQDTFRKFAWFVLLLNISAQVLTQAAFAAGKTGDEDPIMEPVDSLSPMAGFAAMVLVLVMGLGLFPIYLDAMYFTTPADV 1062
+T GL YG + + D + + P+ +AA+ Q F LT + VGF V GS ++ L+ F V +S + D E+ FIP +Y PS + V ++ LG ++YA ++ M + + ++R L+ +F+AG QL LG ++ + + L + + + PEIS+T+G LQ+++S R++ P S F+ +F+ +S QVL Q A A G D+ + A A V +G+ L P +LD P D+
Sbjct: 31 LTLGLCAAYGAFADIVSLADTAKSGL-------------PLATLIAAVFQGFFGLTCMGVGFTGAVMDKGSTLLTTIAASSIQLAWMPFLVGLSTIGMGIVSDPSENPFIPALYDPSAAAVKFVGSMAFLGLMSYAIGFIXXXXXMSFSMHSIQAGKPQDRSGVYFRGRAKLYNGLLFLAGLVQLALGSFIINTYGNGPLEAPIFAVVFLVFSPEISVTIGLLQMIVSTIGIVRSLREKPAPDSVW------FQTLCFFMYFCMMSMQVLAQVAQAPG------------DAAASAAPTLACV---YLGIALMPAFLDWKMNNLPEDL 324 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1086.735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig1086.735.1 >prot_D-dichotoma_M_contig1086.735.1 ID=prot_D-dichotoma_M_contig1086.735.1|Name=mRNA_D-dichotoma_M_contig1086.735.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=405bp MSAYEDNRFKGVDPFPAYIREMGVTSGLLCLYGCITLVQGVYDIVPATIDback to top mRNA from alignment at D-dichotoma_M_contig1086:114896..133311- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig1086.735.1 ID=mRNA_D-dichotoma_M_contig1086.735.1|Name=mRNA_D-dichotoma_M_contig1086.735.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=18416bp|location=Sequence derived from alignment at D-dichotoma_M_contig1086:114896..133311- (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig1086:114896..133311- >mRNA_D-dichotoma_M_contig1086.735.1 ID=mRNA_D-dichotoma_M_contig1086.735.1|Name=mRNA_D-dichotoma_M_contig1086.735.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=2430bp|location=Sequence derived from alignment at D-dichotoma_M_contig1086:114896..133311- (Dictyota dichotoma ODC1387m male)back to top |