mRNA_D-dichotoma_M_contig108.687.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig108.687.1
Unique NamemRNA_D-dichotoma_M_contig108.687.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig108.687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig108contigD-dichotoma_M_contig108:212086..212536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size452
Cds size324
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927575.2439206-UTR-D-dichotoma_M_contig108:212085..2122121622927575.2439206-UTR-D-dichotoma_M_contig108:212085..212212Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig108 212086..212212 +
1690798044.0173926-UTR-D-dichotoma_M_contig108:212085..2122121690798044.0173926-UTR-D-dichotoma_M_contig108:212085..212212Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig108 212086..212212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927575.2636297-CDS-D-dichotoma_M_contig108:212212..2125361622927575.2636297-CDS-D-dichotoma_M_contig108:212212..212536Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig108 212213..212536 +
1690798044.0306559-CDS-D-dichotoma_M_contig108:212212..2125361690798044.0306559-CDS-D-dichotoma_M_contig108:212212..212536Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig108 212213..212536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig108.687.1prot_D-dichotoma_M_contig108.687.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig108 212213..212536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig108.687.1

>prot_D-dichotoma_M_contig108.687.1 ID=prot_D-dichotoma_M_contig108.687.1|Name=mRNA_D-dichotoma_M_contig108.687.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=108bp
MEYMHVHGMIDSRPPSLDESPSVPFTYVLLDGKRRKDWDSRSCDPMMRDF
QASQDHSFWGQHNLLYTSICEPRQTTRSGRDWAAGFTSHPKLNRRQAAGV
EGEVVPDR
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mRNA from alignment at D-dichotoma_M_contig108:212086..212536+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig108.687.1 ID=mRNA_D-dichotoma_M_contig108.687.1|Name=mRNA_D-dichotoma_M_contig108.687.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=451bp|location=Sequence derived from alignment at D-dichotoma_M_contig108:212086..212536+ (Dictyota dichotoma ODC1387m male)
CTCGTATCATCCGTCGTGGAGACATTTCGAGAGCACACAGAGAGTCCATC
TTTAGCCGAGAACATCGTCACTTCATCCGTCCGAGGAAAGCACCAACAAT
TTTTCATTACCTAAAGCGGCGTATGCTATGGAATACATGCATGTACACGG
AATGATTGACTCTCGACCGCCCAGCCTTGACGAATCTCCAAGCGTGCCAT
TCACATACGTACTACTCGACGGGAAACGACGAAAAGATTGGGATAGTCGC
TCTTGTGATCCAATGATGAGGGACTTTCAAGCATCACAAGACCACAGCTT
CTGGGGGCAACACAACCTACTGTACACAAGCATCTGCGAACCACGCCAAA
CGACAAGGAGTGGCCGAGATTGGGCCGCGGGGTTCACCAGTCACCCTAAA
CTGAATCGAAGGCAGGCGGCCGGGGTCGAAGGTGAAGTAGTACCTGACCG
A
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig108:212086..212536+

>mRNA_D-dichotoma_M_contig108.687.1 ID=mRNA_D-dichotoma_M_contig108.687.1|Name=mRNA_D-dichotoma_M_contig108.687.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=648bp|location=Sequence derived from alignment at D-dichotoma_M_contig108:212086..212536+ (Dictyota dichotoma ODC1387m male)
ATGGAATACATGCATGTACACGGAATGATTGACTCTCGACCGCCCAGCCT
TGACGAATCTCCAAGCGTGCCATTCACATACGTACTACTCGACGGGAAAC
GACGAAAAGATTGGGATAGTCGCTCTTGTGATCCAATGATGAGGGACTTT
CAAGCATCACAAGACCACAGCTTCTGGGGGCAACACAACCTACTGTACAC
AAGCATCTGCGAACCACGCCAAACGACAAGGAGTGGCCGAGATTGGGCCG
CGGGGTTCACCAGTCACCCTAAACTGAATCGAAGGCAGGCGGCCGGGGTC
GAAGGTGAAGTAGTACCTGACCGAATGGAATACATGCATGTACACGGAAT
GATTGACTCTCGACCGCCCAGCCTTGACGAATCTCCAAGCGTGCCATTCA
CATACGTACTACTCGACGGGAAACGACGAAAAGATTGGGATAGTCGCTCT
TGTGATCCAATGATGAGGGACTTTCAAGCATCACAAGACCACAGCTTCTG
GGGGCAACACAACCTACTGTACACAAGCATCTGCGAACCACGCCAAACGA
CAAGGAGTGGCCGAGATTGGGCCGCGGGGTTCACCAGTCACCCTAAACTG
AATCGAAGGCAGGCGGCCGGGGTCGAAGGTGAAGTAGTACCTGACCGA
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