mRNA_D-dichotoma_M_contig107.629.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig107.629.1
Unique NamemRNA_D-dichotoma_M_contig107.629.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig107.629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig107contigD-dichotoma_M_contig107:494217..495369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927563.6300929-CDS-D-dichotoma_M_contig107:494216..4944831622927563.6300929-CDS-D-dichotoma_M_contig107:494216..494483Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig107 494217..494483 -
1690798038.0155392-CDS-D-dichotoma_M_contig107:494216..4944831690798038.0155392-CDS-D-dichotoma_M_contig107:494216..494483Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig107 494217..494483 -
1622927563.639623-CDS-D-dichotoma_M_contig107:495339..4953691622927563.639623-CDS-D-dichotoma_M_contig107:495339..495369Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig107 495340..495369 -
1690798038.0266502-CDS-D-dichotoma_M_contig107:495339..4953691690798038.0266502-CDS-D-dichotoma_M_contig107:495339..495369Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig107 495340..495369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig107.629.1prot_D-dichotoma_M_contig107.629.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig107 494217..495369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig107.629.1

>prot_D-dichotoma_M_contig107.629.1 ID=prot_D-dichotoma_M_contig107.629.1|Name=mRNA_D-dichotoma_M_contig107.629.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=99bp
MDEPPVAHRELQRMLDELLAMLRAGSANPGSLYSIMADAQAGAYAQNLED
LGQSLVHWRARAQQMFDASPKYSATFRPALYSHATAYKRCRCSSVESR*
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mRNA from alignment at D-dichotoma_M_contig107:494217..495369-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig107.629.1 ID=mRNA_D-dichotoma_M_contig107.629.1|Name=mRNA_D-dichotoma_M_contig107.629.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1153bp|location=Sequence derived from alignment at D-dichotoma_M_contig107:494217..495369- (Dictyota dichotoma ODC1387m male)
ATGGATGAGCCCCCTGTTGCCCATCGAGAGGTGCGAGCTATGTTGCGTAT
GTCGTGCGAGGTCGTTTTAGTCAATTACATACGAGGCTAATTTCGGATCA
CTTGAAGTAGAGGACCTTTGAGCGAGTGACGTGTCGTTAATGAAAACTGA
GATGACTATCGCGTGCGTGTCCAACATTGTGCGTGACCTCGTACCGCGAT
AGGCACCCACATATACATTGAACTTGTCACCTTTCTGAATATGGCAGCTT
GCATGCGGTCGGATACGATTGTGATATATATATATATATATATATATTTA
CATCTCATGCGGTGTGCCGTGTATCTGCACCCGAAGATGGGTAGCCTGCT
TTCGGTCGGATACGCGTGAGAAAGATGAGAATCCTCACGAGGCGTGCTAA
GTTGCTCGGTTGGAGATGGCGACGAGTAACGCCCAGGTTGAATGTGTGCG
TCTGGGTGGGACGACGCTGCGCTTGCCTCTGATGTATCGGGAACGCCTCG
GTTGCGGTTTATTTGCCCGCGGATGCCCTAGCATGCACATCGGTGCAGAG
CGAGGCTGTGTCAAAATTTGGGTCGACGAACATGAACCCTGCGCGCGCGA
CCTGGCTATCTTGAAAGTGGAAGTCGCGAGTCGACATCTTTATTTTAAAA
ACACGCGGCTGTATCCTTGCGCACACAAGTTCGGATCGCCCAAGGAATGA
GAGCAGAGACCTATACGCGCGCGCGGGTTGTCTAAGGGTACTGGGCAATG
TTGACAGTTACGGCAGATGCTTGATGAGCGCTTTGTGAGTCGTTGTGGGA
CGACGCTGCACGGAATGCGAGCTGAGACTTATGCGCGCGCGCGCGGTTGT
GTTCTCCTGTGCGTGTTGTATCGGCGGATGTGACAGTTACAACGGATGCT
TGATGAGCTCCTGGCGATGTTACGAGCAGGTTCAGCCAATCCGGGGAGCC
TGTACTCGATCATGGCGGACGCGCAAGCGGGGGCGTATGCGCAGAACTTA
GAAGATCTGGGGCAGTCGTTGGTGCATTGGCGAGCACGGGCGCAGCAAAT
GTTCGATGCGTCCCCAAAATACTCGGCTACTTTTCGACCCGCTTTGTATA
GCCATGCTACCGCGTATAAGCGGTGTAGATGCAGCAGTGTTGAAAGCCGA
TAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig107:494217..495369-

>mRNA_D-dichotoma_M_contig107.629.1 ID=mRNA_D-dichotoma_M_contig107.629.1|Name=mRNA_D-dichotoma_M_contig107.629.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=594bp|location=Sequence derived from alignment at D-dichotoma_M_contig107:494217..495369- (Dictyota dichotoma ODC1387m male)
ATGGATGAGCCCCCTGTTGCCCATCGAGAGATGGATGAGCCCCCTGTTGC
CCATCGAGAGTTACAACGGATGCTTGATGAGCTCCTGGCGATGTTACGAG
CAGGTTCAGCCAATCCGGGGAGCCTGTACTCGATCATGGCGGACGCGCAA
GCGGGGGCGTATGCGCAGAACTTAGAAGATCTGGGGCAGTCGTTGGTGCA
TTGGCGAGCACGGGCGCAGCAAATGTTCGATGCGTCCCCAAAATACTCGG
CTACTTTTCGACCCGCTTTGTATAGCCATGCTACCGCGTATAAGCGGTGT
AGATGCAGCAGTGTTGAAAGCCGATAGTTACAACGGATGCTTGATGAGCT
CCTGGCGATGTTACGAGCAGGTTCAGCCAATCCGGGGAGCCTGTACTCGA
TCATGGCGGACGCGCAAGCGGGGGCGTATGCGCAGAACTTAGAAGATCTG
GGGCAGTCGTTGGTGCATTGGCGAGCACGGGCGCAGCAAATGTTCGATGC
GTCCCCAAAATACTCGGCTACTTTTCGACCCGCTTTGTATAGCCATGCTA
CCGCGTATAAGCGGTGTAGATGCAGCAGTGTTGAAAGCCGATAG
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