mRNA_D-dichotoma_M_contig1065.604.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1065.604.1
Unique NamemRNA_D-dichotoma_M_contig1065.604.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1065.604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1065contigD-dichotoma_M_contig1065:184101..184642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size544
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927560.5699604-CDS-D-dichotoma_M_contig1065:184100..1846401622927560.5699604-CDS-D-dichotoma_M_contig1065:184100..184640Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1065 184101..184640 +
1690798036.736993-CDS-D-dichotoma_M_contig1065:184100..1846401690798036.736993-CDS-D-dichotoma_M_contig1065:184100..184640Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1065 184101..184640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1065.604.1prot_D-dichotoma_M_contig1065.604.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1065 184101..184640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1065.604.1

>prot_D-dichotoma_M_contig1065.604.1 ID=prot_D-dichotoma_M_contig1065.604.1|Name=mRNA_D-dichotoma_M_contig1065.604.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=180bp
KSLASDEPSSVDDVPGEFPNLNDPALAEPRAADISSPGEPASRDPAPAIA
PTPRIPPDEDNDQGVEEEEIEEPQSSVDNIEGTPSRRTRSKDSAPEWSFN
FLVASVSNSDGMGESSRLRDSAYLTEVKHKVSHALAMVETHDMNPVSVPH
VPLSEIEPEPVSYTEAMASKYRNVWVNVMK
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mRNA from alignment at D-dichotoma_M_contig1065:184101..184642+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1065.604.1 ID=mRNA_D-dichotoma_M_contig1065.604.1|Name=mRNA_D-dichotoma_M_contig1065.604.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=542bp|location=Sequence derived from alignment at D-dichotoma_M_contig1065:184101..184642+ (Dictyota dichotoma ODC1387m male)
AAGTCTTTGGCGTCGGATGAGCCATCCAGTGTGGACGATGTCCCCGGTGA
ATTCCCGAACCTGAATGATCCGGCTTTGGCTGAGCCACGAGCCGCGGATA
TTTCAAGTCCCGGCGAGCCAGCTAGCCGTGATCCCGCGCCTGCGATCGCG
CCTACTCCCAGAATTCCGCCCGACGAAGATAACGATCAGGGCGTGGAGGA
GGAGGAAATCGAAGAACCACAGTCATCTGTGGATAACATCGAGGGAACCC
CAAGCCGAAGGACTCGGAGTAAGGATTCCGCGCCTGAATGGAGTTTCAAT
TTCCTTGTGGCTTCTGTTTCGAATTCGGACGGGATGGGGGAGAGTTCTAG
ACTTCGTGATAGTGCGTACCTGACTGAGGTTAAACATAAAGTGAGTCATG
CGCTCGCTATGGTGGAAACCCACGACATGAACCCTGTAAGTGTCCCGCAT
GTGCCACTGTCTGAAATTGAGCCCGAGCCTGTGTCTTATACCGAGGCCAT
GGCGTCGAAGTACCGTAACGTGTGGGTGAATGTGATGAAGAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1065:184101..184642+

>mRNA_D-dichotoma_M_contig1065.604.1 ID=mRNA_D-dichotoma_M_contig1065.604.1|Name=mRNA_D-dichotoma_M_contig1065.604.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1080bp|location=Sequence derived from alignment at D-dichotoma_M_contig1065:184101..184642+ (Dictyota dichotoma ODC1387m male)
AAGTCTTTGGCGTCGGATGAGCCATCCAGTGTGGACGATGTCCCCGGTGA
ATTCCCGAACCTGAATGATCCGGCTTTGGCTGAGCCACGAGCCGCGGATA
TTTCAAGTCCCGGCGAGCCAGCTAGCCGTGATCCCGCGCCTGCGATCGCG
CCTACTCCCAGAATTCCGCCCGACGAAGATAACGATCAGGGCGTGGAGGA
GGAGGAAATCGAAGAACCACAGTCATCTGTGGATAACATCGAGGGAACCC
CAAGCCGAAGGACTCGGAGTAAGGATTCCGCGCCTGAATGGAGTTTCAAT
TTCCTTGTGGCTTCTGTTTCGAATTCGGACGGGATGGGGGAGAGTTCTAG
ACTTCGTGATAGTGCGTACCTGACTGAGGTTAAACATAAAGTGAGTCATG
CGCTCGCTATGGTGGAAACCCACGACATGAACCCTGTAAGTGTCCCGCAT
GTGCCACTGTCTGAAATTGAGCCCGAGCCTGTGTCTTATACCGAGGCCAT
GGCGTCGAAGTACCGTAACGTGTGGGTGAATGTGATGAAGAAGTCTTTGG
CGTCGGATGAGCCATCCAGTGTGGACGATGTCCCCGGTGAATTCCCGAAC
CTGAATGATCCGGCTTTGGCTGAGCCACGAGCCGCGGATATTTCAAGTCC
CGGCGAGCCAGCTAGCCGTGATCCCGCGCCTGCGATCGCGCCTACTCCCA
GAATTCCGCCCGACGAAGATAACGATCAGGGCGTGGAGGAGGAGGAAATC
GAAGAACCACAGTCATCTGTGGATAACATCGAGGGAACCCCAAGCCGAAG
GACTCGGAGTAAGGATTCCGCGCCTGAATGGAGTTTCAATTTCCTTGTGG
CTTCTGTTTCGAATTCGGACGGGATGGGGGAGAGTTCTAGACTTCGTGAT
AGTGCGTACCTGACTGAGGTTAAACATAAAGTGAGTCATGCGCTCGCTAT
GGTGGAAACCCACGACATGAACCCTGTAAGTGTCCCGCATGTGCCACTGT
CTGAAATTGAGCCCGAGCCTGTGTCTTATACCGAGGCCATGGCGTCGAAG
TACCGTAACGTGTGGGTGAATGTGATGAAG
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