prot_D-dichotoma_M_contig954.20260.1 (polypeptide) Dictyota dichotoma ODC1387m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-dichotoma_M_contig954.20260.1
Unique Nameprot_D-dichotoma_M_contig954.20260.1
Typepolypeptide
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Sequence length395
Homology
BLAST of mRNA_D-dichotoma_M_contig954.20260.1 vs. uniprot
Match: A0A6H5JLQ0_9PHAE (CS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ0_9PHAE)

HSP 1 Score: 284 bits (726), Expect = 4.570e-89
Identity = 174/300 (58.00%), Postives = 205/300 (68.33%), Query Frame = 0
Query:   39 EAEEQSANG--DARNFWFRALMTVVVVIVCYVATRVIRGESAEERRLRLRAARRSKKKAE-RTGPDEIDKLLASVVRRKPGQQIPPGATPIG--------PGMPRXXXXXXXXXXXXXXXXXXXRNAAVRGNGVARGPPPPGA-DHRPKLRWDQTNEEVELVIRVDPKVARSDVQVEITTTLLKLNLRGQTVISGHLFKTVDPEGSTWVIDDPGPGHPKEVTITLLKAEPATSREQLWRSPLKGLEGRAPPNNAAGRRSPPPQADPEMVRKAIEAIRAKSGGGPGVKLGAR-SPAIQGAG 325
            + EE   +G  D  +F  +A + V+V+IVC +A +VIRGE+ EE+RLRLR  RR+KKKA+ +  PDEID+LL+S+VRR+PGQ  PPGA PI         P                  XXXXX        G  RG PPPGA D+RPKLRWDQ+NEEVE++IRVDPKVARSDV+VE+T T+LKL+LR Q VI+G+LFK VDPEG TW IDDPGPG PKEVTITLLKAEPA SRE  WR+PLKGLE R P          P  ADPEMVRKAIEAI+AKS  G G KL A+  PA  GAG
Sbjct:   34 DVEEMILSGEQDQWSFLTKAAVAVLVIIVCLIANKVIRGETPEEKRLRLRNQRRAKKKADSKNEPDEIDRLLSSIVRRQPGQDPPPGAVPISAHVAARSVPDGGAGRGAGPASPAAPRTXXXXXXXXXXXAVGGRRGAPPPGAVDNRPKLRWDQSNEEVEIIIRVDPKVARSDVKVEVTGTMLKLSLRNQPVIAGNLFKPVDPEGCTWQIDDPGPGQPKEVTITLLKAEPAKSREAWWRAPLKGLETRRPA---------PKPADPEMVRKAIEAIKAKSAAGGGTKLTAKPGPAKVGAG 324          
BLAST of mRNA_D-dichotoma_M_contig954.20260.1 vs. uniprot
Match: D8LBI6_ECTSI (CS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI6_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 9.390e-43
Identity = 113/281 (40.21%), Postives = 138/281 (49.11%), Query Frame = 0
Query:   39 EAEEQSANG--DARNFWFRALMTVVVVIVCYVATRVIRGESAEERRLRLRAARRSKKKAERTGPDEIDKLLASVVRRKPGQQIPPGATPIGPGMPRXXXXXXXXXXXXXXXXXXXRNAAVRGNGVARGPPPPGADHRPKLRWDQTNEEVELVIRVDPKVARSDVQVEITTTLLKLNLRGQTVISGHLFKTVDPEGSTWVIDDPGPGHPKEVTITLLKAEPATSREQLWRSPLKGLEGRAPPNNAAGRRSPPPQADPEMVRKAIEAIRAKSGGGPGVKLGAR 317
            + EE   +G  D  +F  +A + V+V+IVC +A +VIRGE+ EE+RLRLR  RR+KKKA                                                                                   D  NE         P V+RSDV+VE+T ++LKL+LR Q VI+G+LFK VDPEG TW ID+PGPG PKEVTITLLKAEPA SRE  WR+PLKGLE R P          P  ADPEMVR+AIEA  +KS  G G KL A+
Sbjct:   34 DVEEMMLSGEQDQWSFLTKAAVAVMVIIVCLIANKVIRGETPEEKRLRLRNQRRAKKKA-----------------------------------------------------------------------------------DSKNE---------PDVSRSDVKVEVTGSMLKLSLRNQPVIAGNLFKPVDPEGCTWQIDNPGPGQPKEVTITLLKAEPAKSREAWWRAPLKGLETRRPA---------PKPADPEMVREAIEAFMSKSAAGGGPKLTAK 213          
BLAST of mRNA_D-dichotoma_M_contig954.20260.1 vs. uniprot
Match: A0A4P2TYN6_9TRYP (NudC2 protein (Fragment) n=2 Tax=Strigomonas galati TaxID=1003336 RepID=A0A4P2TYN6_9TRYP)

HSP 1 Score: 55.8 bits (133), Expect = 1.020e-5
Identity = 32/94 (34.04%), Postives = 53/94 (56.38%), Query Frame = 0
Query:  178 WDQTNEEVELVIRVDPKVARSDVQVEITTTLLKLNLRGQT-VISGHLFKTVDPEGSTWVIDDPGPGHPKEVTITLLKAEPATSREQLWRSPLKG 270
            + QT +E+ +V+ + P      + V ITTT LK+ L+G+  ++ G+L+K +    STW I+D      KE+TITL+K       E+ W   ++G
Sbjct:   29 FTQTEKEINIVVPLTPGTTSKQLVVVITTTHLKVGLKGKDPILEGNLYKPIKASESTWTIEDK-----KELTITLVKTN--LKYEEWWPCVVEG 115          
BLAST of mRNA_D-dichotoma_M_contig954.20260.1 vs. uniprot
Match: UPI000945A86E (nudC domain-containing protein 1 isoform X2 n=2 Tax=Rhinolophus sinicus TaxID=89399 RepID=UPI000945A86E)

HSP 1 Score: 56.6 bits (135), Expect = 4.860e-5
Identity = 23/65 (35.38%), Postives = 40/65 (61.54%), Query Frame = 0
Query:  174 PKLRWDQTNEEVELVIRVDPKVARSDVQVEITTTLLKLNLRGQTVISGHLFKTVDPEGSTWVIDD 238
            P   W QT +++ + +R+     + DVQV++    + + L+GQ V+ G+L+ +VD E STW+I D
Sbjct:  275 PLYYWQQTEDDLTVTVRLPEDSTKEDVQVQVVPDHVNIVLKGQRVLEGNLYSSVDHESSTWIIKD 339          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig954.20260.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JLQ0_9PHAE4.570e-8958.00CS domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LBI6_ECTSI9.390e-4340.21CS domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A4P2TYN6_9TRYP1.020e-534.04NudC2 protein (Fragment) n=2 Tax=Strigomonas galat... [more]
UPI000945A86E4.860e-535.38nudC domain-containing protein 1 isoform X2 n=2 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 78..98
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..51
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 52..73
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 74..394
NoneNo IPR availableTMHMMTMhelixcoord: 51..73
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 168..273
e-value: 1.3E-17
score: 65.8
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 173..270
IPR007052CS domainPFAMPF04969CScoord: 174..253
e-value: 4.8E-13
score: 49.9
IPR007052CS domainPROSITEPS51203CScoord: 171..268
score: 15.293
IPR037898NudC familyPANTHERPTHR12356NUCLEAR MOVEMENT PROTEIN NUDCcoord: 48..270

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig954contigD-dichotoma_M_contig954:114604..127014 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig954.20260.1mRNA_D-dichotoma_M_contig954.20260.1Dictyota dichotoma ODC1387m malemRNAD-dichotoma_M_contig954 114555..127233 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-dichotoma_M_contig954.20260.1 ID=prot_D-dichotoma_M_contig954.20260.1|Name=mRNA_D-dichotoma_M_contig954.20260.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=395bp
MATAGETVPDSAATADAAERLAKAAGEAADAAGEALGIEAEEQSANGDAR
NFWFRALMTVVVVIVCYVATRVIRGESAEERRLRLRAARRSKKKAERTGP
DEIDKLLASVVRRKPGQQIPPGATPIGPGMPRGMPAGAGQGAAANAAGAA
ARNAAVRGNGVARGPPPPGADHRPKLRWDQTNEEVELVIRVDPKVARSDV
QVEITTTLLKLNLRGQTVISGHLFKTVDPEGSTWVIDDPGPGHPKEVTIT
LLKAEPATSREQLWRSPLKGLEGRAPPNNAAGRRSPPPQADPEMVRKAIE
AIRAKSGGGPGVKLGARSPAIQGAGQATNSSPNAGTAVATAAAAGPTATA
AANAPASTGEGAAGTVAGNATAAAQPAAVKAGKTGGKKKNRKKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR007052CS_dom
IPR037898NudC_fam