mRNA_D-dichotoma_M_contig991.20540.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig991.20540.1
Unique NamemRNA_D-dichotoma_M_contig991.20540.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig991.20540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig991contigD-dichotoma_M_contig991:5200..5580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size383
Cds size381
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931263.4131737-CDS-D-dichotoma_M_contig991:5199..55801622931263.4131737-CDS-D-dichotoma_M_contig991:5199..5580Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig991 5200..5580 +
1690799692.930364-CDS-D-dichotoma_M_contig991:5199..55801690799692.930364-CDS-D-dichotoma_M_contig991:5199..5580Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig991 5200..5580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig991.20540.1prot_D-dichotoma_M_contig991.20540.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig991 5200..5580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig991.20540.1

>prot_D-dichotoma_M_contig991.20540.1 ID=prot_D-dichotoma_M_contig991.20540.1|Name=mRNA_D-dichotoma_M_contig991.20540.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=127bp
MKAKSKKPVAHGLVADLDWCPTLFIVRWITTKPLPQLSSRHLAPLVVDLL
HVFPQTTGGAWRGHGSIPASTLGTIPRAYRVIRYELVPSLRDDWLTDSES
LMHKLYSFAFLLPYLQGEMEVEEQHHF
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mRNA from alignment at D-dichotoma_M_contig991:5200..5580+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig991.20540.1 ID=mRNA_D-dichotoma_M_contig991.20540.1|Name=mRNA_D-dichotoma_M_contig991.20540.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=381bp|location=Sequence derived from alignment at D-dichotoma_M_contig991:5200..5580+ (Dictyota dichotoma ODC1387m male)
ATGAAAGCCAAGAGCAAGAAGCCAGTTGCACACGGTCTTGTGGCTGACCT
TGACTGGTGTCCTACCCTCTTCATCGTCAGATGGATCACTACCAAGCCAC
TTCCGCAGCTCAGTAGCCGTCACCTGGCGCCCCTCGTTGTTGATTTGCTC
CACGTTTTCCCTCAGACGACGGGTGGTGCCTGGCGGGGCCATGGGTCCAT
TCCTGCCTCCACGTTGGGAACCATCCCTCGTGCGTATAGAGTGATACGCT
ATGAACTGGTCCCTAGCCTCCGTGATGATTGGCTTACTGATTCCGAGAGC
CTGATGCACAAACTGTACAGCTTCGCGTTCCTTCTTCCCTATCTTCAAGG
TGAGATGGAAGTAGAGGAGCAGCATCATTTT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig991:5200..5580+

>mRNA_D-dichotoma_M_contig991.20540.1 ID=mRNA_D-dichotoma_M_contig991.20540.1|Name=mRNA_D-dichotoma_M_contig991.20540.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=762bp|location=Sequence derived from alignment at D-dichotoma_M_contig991:5200..5580+ (Dictyota dichotoma ODC1387m male)
ATGAAAGCCAAGAGCAAGAAGCCAGTTGCACACGGTCTTGTGGCTGACCT
TGACTGGTGTCCTACCCTCTTCATCGTCAGATGGATCACTACCAAGCCAC
TTCCGCAGCTCAGTAGCCGTCACCTGGCGCCCCTCGTTGTTGATTTGCTC
CACGTTTTCCCTCAGACGACGGGTGGTGCCTGGCGGGGCCATGGGTCCAT
TCCTGCCTCCACGTTGGGAACCATCCCTCGTGCGTATAGAGTGATACGCT
ATGAACTGGTCCCTAGCCTCCGTGATGATTGGCTTACTGATTCCGAGAGC
CTGATGCACAAACTGTACAGCTTCGCGTTCCTTCTTCCCTATCTTCAAGG
TGAGATGGAAGTAGAGGAGCAGCATCATTTTATGAAAGCCAAGAGCAAGA
AGCCAGTTGCACACGGTCTTGTGGCTGACCTTGACTGGTGTCCTACCCTC
TTCATCGTCAGATGGATCACTACCAAGCCACTTCCGCAGCTCAGTAGCCG
TCACCTGGCGCCCCTCGTTGTTGATTTGCTCCACGTTTTCCCTCAGACGA
CGGGTGGTGCCTGGCGGGGCCATGGGTCCATTCCTGCCTCCACGTTGGGA
ACCATCCCTCGTGCGTATAGAGTGATACGCTATGAACTGGTCCCTAGCCT
CCGTGATGATTGGCTTACTGATTCCGAGAGCCTGATGCACAAACTGTACA
GCTTCGCGTTCCTTCTTCCCTATCTTCAAGGTGAGATGGAAGTAGAGGAG
CAGCATCATTTT
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