mRNA_D-dichotoma_M_contig990.20539.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig990.20539.1
Unique NamemRNA_D-dichotoma_M_contig990.20539.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig990.20539.1 vs. uniprot
Match: A0A6H5JV12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV12_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 6.910e-7
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    7 VRTPQAFKFAQDPADGEVKMQVQARSYNEDWGVINR 114
            V  PQAFK ++DP+DG   MQVQ RSY E+WGVINR
Sbjct:   42 VTKPQAFKVSKDPSDGVATMQVQQRSYKEEWGVINR 77
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig990.20539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JV12_9PHAE6.910e-766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig990contigD-dichotoma_M_contig990:247268..248037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size213
Cds size150
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig990.20539.1prot_D-dichotoma_M_contig990.20539.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig990 247331..248037 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931262.599005-UTR-D-dichotoma_M_contig990:247267..2473301622931262.599005-UTR-D-dichotoma_M_contig990:247267..247330Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig990 247268..247330 +
1690799692.5216165-UTR-D-dichotoma_M_contig990:247267..2473301690799692.5216165-UTR-D-dichotoma_M_contig990:247267..247330Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig990 247268..247330 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931262.6227093-CDS-D-dichotoma_M_contig990:247330..2473811622931262.6227093-CDS-D-dichotoma_M_contig990:247330..247381Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig990 247331..247381 +
1690799692.5336845-CDS-D-dichotoma_M_contig990:247330..2473811690799692.5336845-CDS-D-dichotoma_M_contig990:247330..247381Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig990 247331..247381 +
1622931262.637859-CDS-D-dichotoma_M_contig990:247938..2480371622931262.637859-CDS-D-dichotoma_M_contig990:247938..248037Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig990 247939..248037 +
1690799692.5457635-CDS-D-dichotoma_M_contig990:247938..2480371690799692.5457635-CDS-D-dichotoma_M_contig990:247938..248037Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig990 247939..248037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig990.20539.1

>prot_D-dichotoma_M_contig990.20539.1 ID=prot_D-dichotoma_M_contig990.20539.1|Name=mRNA_D-dichotoma_M_contig990.20539.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=50bp
MQVQARSYNEDWGVINRVYCLRVQQQRASTRVGCRSWRRVSWTSASLRA*
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mRNA from alignment at D-dichotoma_M_contig990:247268..248037+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig990.20539.1 ID=mRNA_D-dichotoma_M_contig990.20539.1|Name=mRNA_D-dichotoma_M_contig990.20539.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=770bp|location=Sequence derived from alignment at D-dichotoma_M_contig990:247268..248037+ (Dictyota dichotoma ODC1387m male)
TACGCGGTGAGGACACCCCAAGCCTTCAAGTTCGCCCAGGACCCAGCGGA
CGGTGAGGTCAAGATGCAAGTGCAGGCCAGGAGCTATAATGAAGACTGGG
GCGTGATCAACAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTC
GTCGCGTGGGTTGTTATTATTATTGTTGTTTTTGTCGATGTACACGCTGA
GGAAAGAACGAGCTGTCGTCAAGCTTGAACCGTTCGTGACACTTTCGGTG
GTGACGCTCCATCTGGGCAGACACCACCACATCGCCTTGAGGTTTCATGT
TGTTGCGTCGCTCTTTCTTGTGCTCCATTGCCTACCAATAGGAACGGAGA
GTACGGCCCTGGATGGATGACACTCATGAAGAGTTGGCCTGATCTGCGGG
ACATACCCGATCACCCGCGGAAAGTCATCCCGGACCACACCCCTCCATCA
GCATCGCGTGTCCATCGAAGCGTCTGGGCCACGAATTCGTGCCGCAACGT
CGGTGAGATTTGTACGGGCTTGGTCGTGCTATTGTCACGTGCGTGATTTT
TCTGTTTGATTGTTTCTACCCGTCACGCTGGATACTGCGTAAATGTGGCC
TAGTAACAAAGTACACGGCAGCTGAACGTTAACTAAGACCCGTGTAAATA
TCTGATCGCTTTTCCGTGCAGGTGTATTGCCTGAGGGTGCAACAGCAGAG
GGCCTCTACGCGAGTAGGATGCAGGAGCTGGCGGAGAGTGTCGTGGACCT
CGGCCAGTCTTCGAGCCTGA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig990:247268..248037+

>mRNA_D-dichotoma_M_contig990.20539.1 ID=mRNA_D-dichotoma_M_contig990.20539.1|Name=mRNA_D-dichotoma_M_contig990.20539.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=300bp|location=Sequence derived from alignment at D-dichotoma_M_contig990:247268..248037+ (Dictyota dichotoma ODC1387m male)
ATGCAAGTGCAGGCCAGGAGCTATAATGAAGACTGGGGCGTGATCAACAG
GATGCAAGTGCAGGCCAGGAGCTATAATGAAGACTGGGGCGTGATCAACA
GGGTGTATTGCCTGAGGGTGCAACAGCAGAGGGCCTCTACGCGAGTAGGA
TGCAGGAGCTGGCGGAGAGTGTCGTGGACCTCGGCCAGTCTTCGAGCCTG
AGTGTATTGCCTGAGGGTGCAACAGCAGAGGGCCTCTACGCGAGTAGGAT
GCAGGAGCTGGCGGAGAGTGTCGTGGACCTCGGCCAGTCTTCGAGCCTGA
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