mRNA_D-dichotoma_M_contig985.20498.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig985.20498.1
Unique NamemRNA_D-dichotoma_M_contig985.20498.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig985.20498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig985contigD-dichotoma_M_contig985:127800..131549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size668
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig985.20498.1prot_D-dichotoma_M_contig985.20498.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig985 127919..128302 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931256.1659229-UTR-D-dichotoma_M_contig985:127799..1279181622931256.1659229-UTR-D-dichotoma_M_contig985:127799..127918Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig985 127800..127918 +
1690799689.6379132-UTR-D-dichotoma_M_contig985:127799..1279181690799689.6379132-UTR-D-dichotoma_M_contig985:127799..127918Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig985 127800..127918 +
1622931256.2021606-UTR-D-dichotoma_M_contig985:128302..1284241622931256.2021606-UTR-D-dichotoma_M_contig985:128302..128424Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig985 128303..128424 +
1690799689.6616135-UTR-D-dichotoma_M_contig985:128302..1284241690799689.6616135-UTR-D-dichotoma_M_contig985:128302..128424Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig985 128303..128424 +
1622931256.2218008-UTR-D-dichotoma_M_contig985:131506..1315491622931256.2218008-UTR-D-dichotoma_M_contig985:131506..131549Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig985 131507..131549 +
1690799689.6722546-UTR-D-dichotoma_M_contig985:131506..1315491690799689.6722546-UTR-D-dichotoma_M_contig985:131506..131549Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig985 131507..131549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931256.1858885-CDS-D-dichotoma_M_contig985:127918..1283021622931256.1858885-CDS-D-dichotoma_M_contig985:127918..128302Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig985 127919..128302 +
1690799689.6499813-CDS-D-dichotoma_M_contig985:127918..1283021690799689.6499813-CDS-D-dichotoma_M_contig985:127918..128302Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig985 127919..128302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig985.20498.1

>prot_D-dichotoma_M_contig985.20498.1 ID=prot_D-dichotoma_M_contig985.20498.1|Name=mRNA_D-dichotoma_M_contig985.20498.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=128bp
MFVCLPCSQYPDGAACGGGSKASSGVLSSGCPAAPSQHTSPTALKREIWS
GQKAQTPCLPGAKYGSEGSCSRQINLRVAVEADGCGRCIGRGAKKSQCYG
KKRDRKYPEVVLIRLPARVVRRATVES*
back to top

mRNA from alignment at D-dichotoma_M_contig985:127800..131549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig985.20498.1 ID=mRNA_D-dichotoma_M_contig985.20498.1|Name=mRNA_D-dichotoma_M_contig985.20498.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=3750bp|location=Sequence derived from alignment at D-dichotoma_M_contig985:127800..131549+ (Dictyota dichotoma ODC1387m male)
ATGGAGATCAGGAAACACGGTACTTATTGGATTCCGTGGTCATGCCATCG
GACCGCAGTTAGCATGATGGATTGTGTTGTTGGAGATGTACCTTATGGCT
GAATACCGGCGACCTTCCCATGTTTGTGTGCTTGCCGTGCTCTCAATATC
CAGACGGAGCAGCTTGTGGCGGAGGTAGCAAGGCGAGCTCGGGTGTCCTC
TCCTCGGGGTGTCCAGCAGCTCCGTCTCAACACACATCCCCGACGGCGTT
GAAGCGCGAGATCTGGAGTGGACAGAAGGCGCAAACGCCCTGCCTCCCGG
GAGCAAAATACGGTTCGGAGGGCAGCTGTTCGAGGCAGATAAACCTGCGT
GTTGCCGTCGAAGCGGATGGATGTGGCCGTTGTATCGGACGGGGGGCTAA
GAAGTCACAGTGTTATGGAAAAAAACGGGACAGAAAGTACCCAGAAGTCG
TACTCATTCGTCTCCCCGCGCGCGTGGTGAGGAGAGCAACGGTAGAGTCG
TAGCGCCTCTACGGACCGGCGGCGGGGGCGGCGACAAAAGTGGGGGAAGC
AGAATCGGAACATATATCTCACTCGGACGTCTCCCCAACTCGTTCGGTGG
GAGGACAGAAGACGCGGGTTATCAGGTATCTAGAAAGACAAGGCATTGCG
CGTCTCGACGAATCACTGTCATAGAAATAGGGCCGTTCCTAACGACATAT
ATTTCCAAGTTATTTTCCAAGTTTTTCCAAGTTTTTGCACGTGACGCATC
GGCATCACAGACGTAGCGATCTTTACCCGCGATTTAGTCTCAGATTACGT
TCGATTGCCATGAGACCATAGTCGGTTCTTCTTTTGCCTTTGGGCATGAT
GTGGCATGGTAGATCACGGCCTGAGTTGAGTTAACTGATTCGCTACTGCT
GCCTACGGAATGCGTGGGAACCTTGTACGAAAAGCGCTGCCCATAGAGCG
CGCGTGCTTGTTCACCTGGCTCCATTTTTTTTTCAAATTTCCACGTTCCG
AGGACTTCGATCCAGATGAAGACAAAATAAAATTGAAAAGCTTGGATCCA
AGTTTTTGGAAGACGTCCGCCGACAATTCGCTTATATCCAAGTTTCCAAC
TTGGAGTAATGAGAAAACTTGGAATTCTGCATCTTCAGAAACGCCCCTTG
TCGTTGTTACGATGATCTGGAATCGTCGAGGCGAGCAATGCTCTGCCTTC
ATGTTTCTTGGAGAACCCTCATCTTCTGTCCTCTCACTGAACGATTTCGG
GATACGTCCAAATGAGATGCAAGTCTCGATTCCGCCCCCCCGGCATTTGT
CGTCGCCCTCGCCACTGCTCCTTAGAGGAATTAGCGCTCTACTGCTACCA
CTAGCACGACACGCGCAGGGGGACGGATAACAACGACTTCTGGGCACTCT
CCCCCGTTCCATCCTACGTCCAGACTAATCGCCTTTTGTGCGTTGCCATC
CGCTTCGATGGCAACACGTGCATCATCTGCTTGGAAAAGCTGCTCTACGA
GGGATACTCTACTCCCGGAAAGCAGGGCGCCTCCGTCTGCTATCCATTCC
AGATATCGCGCTTTGGCTCCGTCGGGGATGTGCGTTGCGATGGAGCTGGT
GCGCGACCCAGAGGAGAGGACAGCAGACGTTAGCCGTGCCTCCCCGTGAC
ACTGCTTTGTCTGGATATGGAGGGTACCGCAAGCGTACATGCGTGGCACA
GGCGCCACCCTTCGGCCGTAAGGAGCGTCTCCAATAATACGTCGCCATGC
CAATTGCGGTTCGATGACATAACGTTCAAAGCCAATGCACATTTCATATC
CCGTTCTCCGTGTAGCATATAGTGGAGTATGTAGAGAAGAGGGCATCTAA
ACCAGCAGCCTGTGGAACGCACGACATTCTCGTCACCATCCGCACGTCTT
ATTCGCATATCCAAAGCAACCCAGTGAGTTGTCGACGCACTATATGGGTC
GTTCCTAGCGACACCAAAAACAAAATGGAAAACGAATACGAAACTTGATT
CCACCTGTCCGATTTGGAAAATAACTCCTTACCCACTTGCACTTTTCTTG
TTGTATTGGGTGTCGCATTTCCTACTTTCTTCGAGTCGGTGGCTTAACGC
CGCTCTGTATGGCGAACTCCAGTGTGATGCATAATATAAAACATGAGTTA
ACGTGCTTCTTGTGTATCCTCCAATATTTTGAAGCAACAACGGTAACGCA
ATTTTGTACCAAGTGCTATGGAGACTTGGGTGCGTTGTGAAGAATCAGGT
ACTAAGAGAGTGTAAGAGAGCGAGTGCCGCACTCAGGATGCGCACGTGGC
GCTTATCACCACCATAGCAGACGCAGTTACCTTCGCCCGCACTTCAGTCT
TAGATTTCATCCGATTGGCATGAGACCATACTTGGTTCATCGAGTATCTG
TGGATGTGAAGTGGCATACTGGGTCACTTTCTGCGTTTTGTTGACAGTTT
CTCTACTGCTGCCTGTGGAGTGCATGGCACCTTGTACGAAAATGGTTGCC
CAAACAGCACGCGCGCTTGGTCACCTGGCGACACCCTGTCCAAGTTTGCA
CGTTCCGCCAAGGAACTTGGATCCAAATAAAGACGAAAAATCTTGGAACG
TTTGGATCCAAGTTTTCGGACGGGTTTCCGCAGGCGTTTCGCTTGGATCC
AATTTTCCAACCTTGGGATATTGATTCCAAGCGTGAGAATCTGTGTCGTT
AGGAACGGCCCTGTAGTACACACGGCCGTAGTATCGTTGACGGCCATGGC
ACAACGGAAGAAAACTAGAATCCCATGCATAGAGTGCCGCCAAAAGGCAC
GTCATACATCAGTTGGCCCTAGGAAGGGTTTGTGGACACCGCCCAACAAA
GGTGGTGTTAAGAAGCAGGGACAGTGCCTGCATAGCGTAGCTGCTGGAGC
TCCTGGACGCTCAGAAGAACCGGAACAGCCCATAAATGGACGATTGACGA
AAGACGTAAAAATGGAGTGTCTCTTAGTCTATGCGTGCCCACGGGCGCAT
GCGCATCGTGTACGCATGCGCATCGTGCCCCTGGATGGTTGTCGCACGAT
TCGAGTTCATGCGCCCGTGGGCACGCATGGAATGAGAGCCACACAAGCTT
TCTCTACATCTTAGGGTAGCCGTCCATGAATGGGATGTTCCGGTTCTTTT
GAGGGTCCAGCAGCTCCGCTATGCGGGCGTTGTCCTTACTTTTCGACATC
ATCTTTATTTGACGGTGTCCACAAACTCTCCGTAGGGCTTCCGGGGGCCA
ACTAATGTATGTAAGGCATACCTTTCGCTGCGACACTTCATGCAAGTTCA
CATACTTTGATCGACTGGACTGTTGCTTTTCTTCCCCTGTACCGCTCATT
CTCCATCGCAGGTGAGGCGTCGGGGACACGCTCCTTGTCTTGGTAAACAA
ACTTCCGTCACTTCTGAGTCGTCCTCGCTTTCGTCTCCCTCCTCCCCCGA
GCTCCGATCACGACCACCTGATCCGGTGCGGCTCATGCGCCTCGCAGTGG
TGCCGTCCGACGTTGCCATGACGGCCTCGACCTGCTTCCTCTTAACGGGA
TTGTCTGCATCGCCAATCCCGCTTTCCATGTGGTCCGATTCCACGACCGA
TGTGTCGGGTTCGTCGGCGGGTGCGCCGGCGTTCGTTGGCGACCGGCGCT
TATCTCCGACGTACACCGGCTGGTTCGTCATCATCCCTTCGGGACTGCTC
GCAGTAGTCTCCAATGCTTTGGGTTGCTGTGCGCATTATGGTGCACTTTC
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig985:127800..131549+

>mRNA_D-dichotoma_M_contig985.20498.1 ID=mRNA_D-dichotoma_M_contig985.20498.1|Name=mRNA_D-dichotoma_M_contig985.20498.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=768bp|location=Sequence derived from alignment at D-dichotoma_M_contig985:127800..131549+ (Dictyota dichotoma ODC1387m male)
ATGTTTGTGTGCTTGCCGTGCTCTCAATATCCAGACGGAGCAGCTTGTGG
CGGAGGTAGCAAGGCGAGCTCGGGTGTCCTCTCCTCGGGGTGTCCAGCAG
CTCCGTCTCAACACACATCCCCGACGGCGTTGAAGCGCGAGATCTGGAGT
GGACAGAAGGCGCAAACGCCCTGCCTCCCGGGAGCAAAATACGGTTCGGA
GGGCAGCTGTTCGAGGCAGATAAACCTGCGTGTTGCCGTCGAAGCGGATG
GATGTGGCCGTTGTATCGGACGGGGGGCTAAGAAGTCACAGTGTTATGGA
AAAAAACGGGACAGAAAGTACCCAGAAGTCGTACTCATTCGTCTCCCCGC
GCGCGTGGTGAGGAGAGCAACGGTAGAGTCGTAGATGTTTGTGTGCTTGC
CGTGCTCTCAATATCCAGACGGAGCAGCTTGTGGCGGAGGTAGCAAGGCG
AGCTCGGGTGTCCTCTCCTCGGGGTGTCCAGCAGCTCCGTCTCAACACAC
ATCCCCGACGGCGTTGAAGCGCGAGATCTGGAGTGGACAGAAGGCGCAAA
CGCCCTGCCTCCCGGGAGCAAAATACGGTTCGGAGGGCAGCTGTTCGAGG
CAGATAAACCTGCGTGTTGCCGTCGAAGCGGATGGATGTGGCCGTTGTAT
CGGACGGGGGGCTAAGAAGTCACAGTGTTATGGAAAAAAACGGGACAGAA
AGTACCCAGAAGTCGTACTCATTCGTCTCCCCGCGCGCGTGGTGAGGAGA
GCAACGGTAGAGTCGTAG
back to top