mRNA_D-dichotoma_M_contig984.20486.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig984.20486.1
Unique NamemRNA_D-dichotoma_M_contig984.20486.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig984.20486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig984contigD-dichotoma_M_contig984:73876..75284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size954
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig984.20486.1prot_D-dichotoma_M_contig984.20486.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig984 74661..75239 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931253.5375874-UTR-D-dichotoma_M_contig984:73875..741461622931253.5375874-UTR-D-dichotoma_M_contig984:73875..74146Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig984 73876..74146 +
1690799688.6307428-UTR-D-dichotoma_M_contig984:73875..741461690799688.6307428-UTR-D-dichotoma_M_contig984:73875..74146Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig984 73876..74146 +
1622931253.5510032-UTR-D-dichotoma_M_contig984:74601..746601622931253.5510032-UTR-D-dichotoma_M_contig984:74601..74660Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig984 74602..74660 +
1690799688.6418579-UTR-D-dichotoma_M_contig984:74601..746601690799688.6418579-UTR-D-dichotoma_M_contig984:74601..74660Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig984 74602..74660 +
1622931253.578012-UTR-D-dichotoma_M_contig984:75239..752841622931253.578012-UTR-D-dichotoma_M_contig984:75239..75284Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig984 75240..75284 +
1690799688.6651223-UTR-D-dichotoma_M_contig984:75239..752841690799688.6651223-UTR-D-dichotoma_M_contig984:75239..75284Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig984 75240..75284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931253.5663896-CDS-D-dichotoma_M_contig984:74660..752391622931253.5663896-CDS-D-dichotoma_M_contig984:74660..75239Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig984 74661..75239 +
1690799688.6548376-CDS-D-dichotoma_M_contig984:74660..752391690799688.6548376-CDS-D-dichotoma_M_contig984:74660..75239Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig984 74661..75239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig984.20486.1

>prot_D-dichotoma_M_contig984.20486.1 ID=prot_D-dichotoma_M_contig984.20486.1|Name=mRNA_D-dichotoma_M_contig984.20486.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=193bp
MTLSCVGFRSQTCGRGFSMFERRDGDPSTNATALAEINEELASWCRVVPR
YSLRIFFSGDKRLGGLWTQRSVYMPSFSWETSETSTHGVLHVLEISTRAE
QIVGRCCSGSRENVGVDSAWNHWSCRRCRESRQETSKARNSESSSDASSV
RELGRLAGAMRASRRSKEKRQTEASARHNMEHATNTECQIWT*
back to top

mRNA from alignment at D-dichotoma_M_contig984:73876..75284+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig984.20486.1 ID=mRNA_D-dichotoma_M_contig984.20486.1|Name=mRNA_D-dichotoma_M_contig984.20486.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1409bp|location=Sequence derived from alignment at D-dichotoma_M_contig984:73876..75284+ (Dictyota dichotoma ODC1387m male)
AGATTGCAGTGCATACCATGCCGTCGTTTGCAGTGAGAAATGTCCTGGGA
CTCAAAGAGAAACGATGGTTGTGACTCCAAATGAGACGCAAATGTCGGTG
ATTCCGGCATCGAGGAAGGTCCTGACGACAGTTCTCATGGTCGAGCCACC
TGCGATCCATCGTGTGCACAACAACGGAATTCAAACACAGTAATACCGAG
AGTGGGTCGGAACTCGATGCTACCCTCCCCCTCAAATTGCCGCACATTTT
CTTCCGCCACATGCATTTGAGGTGAGCGAAGTGCCGTGGTATATCCGATC
ATGTGTTCTCGTACCTTACGGAATTTGTCATGGGTGCATTAGATGAGCTT
TAACTTCGAACACCTCGGTACTGTAGTATCTTGTGGAACCACCGAGCGTT
AACTGGACATGTTGTGAGCTACGGATAACCATTGAGACGATCGCTGCAGC
GACGCCATCGTTCAAGTTATATATGTCCTGTACGGGATTGCTTGATTCTG
TATGAAGTGTTGACAGGCCTATCGTGTAAGGACGATTCGCGGTGGCTAAG
TGCGGCATTAATTCACTGTACCTTACAGTAACTTAGTCAAATCTACGACG
TTCCCGTTGTTTGCCTCGTTGCGTCCGCGGTCGGTGTTTCATCTGCATCT
CGGTGTCTCATTTGCATCTCATCCTTCCCCTCCATTCATGCGGATGGCCG
GTCCGTATAACACATGGTCGATGCAGATAGAAGCGAAGCAGAGAACGAAG
AAAACGATGCCCGATGGGTTGAGTCACCTGTTCGGATGACTCTTTCTTGC
GTCGGATTCAGAAGTCAAACATGTGGAAGGGGTTTCTCTATGTTCGAACG
TCGCGATGGTGATCCAAGTACAAACGCGACCGCACTTGCCGAGATTAATG
AGGAACTCGCATCATGGTGTAGAGTCGTTCCAAGATACTCTCTCCGAATA
TTTTTTTCTGGAGATAAACGACTCGGCGGCTTGTGGACACAACGCTCGGT
GTATATGCCTTCCTTCTCATGGGAAACTAGCGAGACATCAACACATGGTG
TGCTTCATGTTCTGGAGATTTCTACGCGAGCAGAGCAAATCGTCGGACGT
TGCTGTAGTGGTAGTAGAGAAAACGTCGGCGTTGATTCGGCCTGGAATCA
TTGGAGCTGTCGAAGGTGTCGAGAATCTAGGCAAGAAACTTCGAAAGCGA
GAAACTCAGAGTCTAGCAGCGACGCGAGCTCGGTTCGGGAGCTTGGCAGA
CTGGCTGGAGCCATGCGAGCCTCGCGTCGATCGAAAGAAAAGAGGCAGAC
AGAGGCAAGTGCCCGTCACAACATGGAACATGCGACCAACACGGAGTGCC
AAATTTGGACGTGAAAGCTGTTGGAACTGCATGCGGCGGCAAAAGCAGCA
ATGGCGATT
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig984:73876..75284+

>mRNA_D-dichotoma_M_contig984.20486.1 ID=mRNA_D-dichotoma_M_contig984.20486.1|Name=mRNA_D-dichotoma_M_contig984.20486.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1158bp|location=Sequence derived from alignment at D-dichotoma_M_contig984:73876..75284+ (Dictyota dichotoma ODC1387m male)
ATGACTCTTTCTTGCGTCGGATTCAGAAGTCAAACATGTGGAAGGGGTTT
CTCTATGTTCGAACGTCGCGATGGTGATCCAAGTACAAACGCGACCGCAC
TTGCCGAGATTAATGAGGAACTCGCATCATGGTGTAGAGTCGTTCCAAGA
TACTCTCTCCGAATATTTTTTTCTGGAGATAAACGACTCGGCGGCTTGTG
GACACAACGCTCGGTGTATATGCCTTCCTTCTCATGGGAAACTAGCGAGA
CATCAACACATGGTGTGCTTCATGTTCTGGAGATTTCTACGCGAGCAGAG
CAAATCGTCGGACGTTGCTGTAGTGGTAGTAGAGAAAACGTCGGCGTTGA
TTCGGCCTGGAATCATTGGAGCTGTCGAAGGTGTCGAGAATCTAGGCAAG
AAACTTCGAAAGCGAGAAACTCAGAGTCTAGCAGCGACGCGAGCTCGGTT
CGGGAGCTTGGCAGACTGGCTGGAGCCATGCGAGCCTCGCGTCGATCGAA
AGAAAAGAGGCAGACAGAGGCAAGTGCCCGTCACAACATGGAACATGCGA
CCAACACGGAGTGCCAAATTTGGACGTGAATGACTCTTTCTTGCGTCGGA
TTCAGAAGTCAAACATGTGGAAGGGGTTTCTCTATGTTCGAACGTCGCGA
TGGTGATCCAAGTACAAACGCGACCGCACTTGCCGAGATTAATGAGGAAC
TCGCATCATGGTGTAGAGTCGTTCCAAGATACTCTCTCCGAATATTTTTT
TCTGGAGATAAACGACTCGGCGGCTTGTGGACACAACGCTCGGTGTATAT
GCCTTCCTTCTCATGGGAAACTAGCGAGACATCAACACATGGTGTGCTTC
ATGTTCTGGAGATTTCTACGCGAGCAGAGCAAATCGTCGGACGTTGCTGT
AGTGGTAGTAGAGAAAACGTCGGCGTTGATTCGGCCTGGAATCATTGGAG
CTGTCGAAGGTGTCGAGAATCTAGGCAAGAAACTTCGAAAGCGAGAAACT
CAGAGTCTAGCAGCGACGCGAGCTCGGTTCGGGAGCTTGGCAGACTGGCT
GGAGCCATGCGAGCCTCGCGTCGATCGAAAGAAAAGAGGCAGACAGAGGC
AAGTGCCCGTCACAACATGGAACATGCGACCAACACGGAGTGCCAAATTT
GGACGTGA
back to top