mRNA_D-dichotoma_M_contig98.20462.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig98.20462.1
Unique NamemRNA_D-dichotoma_M_contig98.20462.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
[Close]
BLAST of mRNA_D-dichotoma_M_contig98.20462.1 vs. uniprot
Match: A0A6H5KAS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.640e-19
Identity = 61/147 (41.50%), Postives = 85/147 (57.82%), Query Frame = 2 
Query:   41 EVAQKVGYLHKRRDTLRGRFAYRRRYAVLRF-PPGSTNVAATGDLAGPGGNHPHNAPTVSKTDPPTLALFKTSGEVKSEKVISLEGAEVKLGRSKAGDLYPFVVVFTNSQ---------RQHQHNYVHEAREPAPSRRNTEDFTFPG 451
            EV ++ G L+KRRDTLRGRFAYR++YAVLRF PP + ++++    +G GG          +  PPTL L K  G+ ++ KV+SLEGAEV LG + AG+LYPFV+ F ++          R H++               TED+ F G
Sbjct:  581 EVTERTGVLYKRRDTLRGRFAYRQQYAVLRFEPPEAASLSSLRRESGFGG-------VPLRPPPPTLTLLKGRGKSETGKVMSLEGAEVTLGTAMAGNLYPFVISFPSTAPAPTTISPTRSHRNRPXXXXXXXXXXXXXTEDYMFTG 720
[Close]
BLAST of mRNA_D-dichotoma_M_contig98.20462.1 vs. uniprot
Match: D7FK06_ECTSI (CRAL/TRIO domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK06_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 9.380e-15
Identity = 51/109 (46.79%), Postives = 68/109 (62.39%), Query Frame = 2 
Query:   41 EVAQKVGYLHKRRDTLRGRFAYRRRYAVLRF-PPGSTNVAATGDLAGPGGNHPHNAPTVSKTDPPTLALFKTSGEVKSEKVISLEGAEVKLGRSKAGDLYPFVVVFTNS 364
            E  ++ G L+KRRDTLRGRFAYR++YAVLRF PP +T++++    +G GG      P                 E  +EKV+SLEGAEV LG + AGDLYPFV+ F ++
Sbjct:  595 EFTERTGVLYKRRDTLRGRFAYRQQYAVLRFAPPEATSLSSLRRESGSGG-----VPXXXXXXXXXXXXXXXXSE--TEKVMSLEGAEVTLGTAMAGDLYPFVISFPST 696
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig98.20462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAS6_9PHAE5.640e-1941.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK06_ECTSI9.380e-1546.79CRAL/TRIO domain containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig98contigD-dichotoma_M_contig98:553388..556676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue1e-13
Seed eggNOG ortholog2880.D7FK06
KEGG koko:K15335,ko:K19625
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
EC2.1.1.203
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons4
Model size710
Cds size702
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig98.20462.1prot_D-dichotoma_M_contig98.20462.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig98 553388..556669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931249.1324441-CDS-D-dichotoma_M_contig98:553387..5536081622931249.1324441-CDS-D-dichotoma_M_contig98:553387..553608Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig98 553388..553608 -
1690799686.4472544-CDS-D-dichotoma_M_contig98:553387..5536081690799686.4472544-CDS-D-dichotoma_M_contig98:553387..553608Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig98 553388..553608 -
1622931249.1482806-CDS-D-dichotoma_M_contig98:554677..5548731622931249.1482806-CDS-D-dichotoma_M_contig98:554677..554873Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig98 554678..554873 -
1690799686.4597976-CDS-D-dichotoma_M_contig98:554677..5548731690799686.4597976-CDS-D-dichotoma_M_contig98:554677..554873Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig98 554678..554873 -
1622931249.162254-CDS-D-dichotoma_M_contig98:556205..5564391622931249.162254-CDS-D-dichotoma_M_contig98:556205..556439Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig98 556206..556439 -
1690799686.4701777-CDS-D-dichotoma_M_contig98:556205..5564391690799686.4701777-CDS-D-dichotoma_M_contig98:556205..556439Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig98 556206..556439 -
1622931249.1836212-CDS-D-dichotoma_M_contig98:556618..5566691622931249.1836212-CDS-D-dichotoma_M_contig98:556618..556669Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig98 556619..556669 -
1690799686.4817348-CDS-D-dichotoma_M_contig98:556618..5566691690799686.4817348-CDS-D-dichotoma_M_contig98:556618..556669Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig98 556619..556669 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931249.1985743-UTR-D-dichotoma_M_contig98:556669..5566761622931249.1985743-UTR-D-dichotoma_M_contig98:556669..556676Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig98 556670..556676 -
1690799686.4980288-UTR-D-dichotoma_M_contig98:556669..5566761690799686.4980288-UTR-D-dichotoma_M_contig98:556669..556676Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig98 556670..556676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig98.20462.1

>prot_D-dichotoma_M_contig98.20462.1 ID=prot_D-dichotoma_M_contig98.20462.1|Name=mRNA_D-dichotoma_M_contig98.20462.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=234bp
MARRSSALGSDEVAQKVGYLHKRRDTLRGRFAYRRRYAVLRFPPGSTNVA
ATGDLAGPGGNHPHNAPTVSKTDPPTLALFKTSGEVKSEKVISLEGAEVK
LGRSKAGDLYPFVVVFTNSQRQHQHNYVHEAREPAPSRRNTEDFTFPGSG
MAPKVTSSVAGRSRLASASGELDGINEDVDEEDEDDEDDENEDDPRASGR
FVFPGRVFGSLRDVTRASNGGGAGARRYPSLRQG
back to top

mRNA from alignment at D-dichotoma_M_contig98:553388..556676-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig98.20462.1 ID=mRNA_D-dichotoma_M_contig98.20462.1|Name=mRNA_D-dichotoma_M_contig98.20462.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=3289bp|location=Sequence derived from alignment at D-dichotoma_M_contig98:553388..556676- (Dictyota dichotoma ODC1387m male)
GGAGGGTATGGCTCGGAGAAGCTCGGCGCTTGGCAGTGACGAGGTGGCCC
AGAAGGTGGTGAGTTCCTCGGATGTTCGCGCCGTTTCGTACGACGAAGAT
ATTCTTTTTTGTCTGAAGTTTTCATCCTTTAGTTTCGCCTCGCTCGATTC
GCTTGCTTCTTCGCTCCGTTTTTTCGACTTTGTATCTTTGCCCGTGGAAC
TAACGTGTTCGACGCGTCTTGGGACCGTTTTCGATAGGGATATCTCCACA
AACGCCGGGATACCCTGAGGGGGCGTTTTGCCTACCGGCGTAGGTACGCC
GTCTTGCGATTCCCTCCGGGGTCGACGAACGTGGCGGCTACTGGAGACTT
GGCCGGTCCCGGTGGCAATCACCCCCACAACGCGCCAACTGTCTCGAAGA
CGGACCCTCCGACGCTAGCGCTCTTCAAGACTAGCGGTGAGGTGAAGTCT
GAGAAGGTGATCTCGCTCGAGGTGAGTGAATCCGCCCGTTCAAGGATGTG
GCGTGGGCGACGGAGTGGGATTTTGAGGGCCGGTCTCGGTTGGAGGAGAT
GTGGCGCCTTTCGACCCCCGGAGAGTTTTCTTTAGCCGCTTGGCTGGTGC
TTGGTAGGGTTGTAGGGAGTCGATGGCGGGTTTCACGGCGCGATCCTACG
TTCCCGATGGAGGTGATATATAGTGTGTGTGTGTGTGTGTGTGTCGAGTA
CCTAGCTGATGAACTTGTTGCGCCAGACTCACTAAGGCCTGCCATGTCTA
TTGATGTGCAACATCATGCGGCGATACCGAGATGCGTTAACCCTTTTATC
GCTGAGTTGGGTTTCTCAACCTTTCTAGGGCCGGGGCCAACAGGGTGTTG
CTGTTGCTGTTGGCTTTATTATGGATTCCGAGGTATCATCCAATACTCCG
CATGATGCAATCATCTACGAAGCAAGACAGACCACGAGGTGGGGTGGATC
GAAATCGACTTATAAATTCATGCAGCAGCCTCTTGGGCTGCACTTTCGCC
ACGGCTAGACGCTACGGGTGATCGTTTGTGTTTTGTCGGCCGTTCCTTGA
CTAATTTTTGGTCCGTCCCAACCCTGCGATATAATGGACCCTAGAATGGT
TTACTTGTTTTGGGGGGAGATGGTGGTACAGTCGAGGGCCAGAGATAATC
AACTTCCGATAACCAATGGACTATAGATAACCAAGACTATAGGTAGAACA
AGAAGGGGAAACGCAGCCATCCCCTGGGTTTGGATATTATCTTTTGAGGG
AAGCGTGCATGGCATACTTCTTGGATTATGGATGTACAGGTCATCAGCTT
TTGTGGGAATTAGACGTTCTGGTTATTTGCCGCATCCATGGATGAAATGG
CCTAGCTTTGCTCGGTGGTAGACTTGAGATAACCAAAATCTCTAGATAAC
CGAAGACCAGGCTTTCTTTGGTTATCTCTGGCCCTCGACTGTATCTCTGA
CCTACTGTCAAGACTACAGCCCTGCCTTGGCAAGGTCGTTATTTGCACTC
CCAAGAGCCGTGGTGTATCATGGTTTCCCGGGGCGACTATGAGGCATGAC
CAGCAGGCGAAGATGGTGCAATCGCATCTTTTTTTTTTATGTAACTCCGG
CGTTTGGTATGGTGGTATGGGCTATCGTCGTGGTAGATACTGGTTTCGCG
CGAGTAACTCGGCGTAGCACCCATTCGATGGATAGGCGAGAGTGCTGTTG
TGACCTTCGCCTTGGTTCTGGTGCGGTGCGTGACCAATCCCCTCTTCTCT
TGTCGGGTTCGGCGTGCATCTCGCGTTTCGCGTCGTCCCCTCTATCGTTC
CAGGGCGCAGAGGTGAAGCTCGGGAGGTCAAAGGCCGGCGACTTGTACCC
CTTCGTGGTGGTTTTCACGAATAGCCAACGCCAACATCAGCACAACTATG
TCCACGAGGCCCGCGAGCCTGCCCCCTCACGGCGGAACACGGAGGATTTC
ACCTTCCCCGGGTCCGGAATGGCCCCGAAAGTGACATCATCCGTTGCAGG
TTCGTCGAGTCGTACAGGGCTTTCGATCGTATAAGGGGGTGCCTTTGACC
GGTTGACTGACTTGGGCTTAACCCTCAAGACGCCTAGCGGAACCAGAAGT
GGGTTTATTATACAAGTCCGTCCCCGTTACAGTACTCTGACCGATTTGAC
TCAACATAACTAACTGAGTAAGACGCTCCCAGATGAATGACATGGACTTT
TCCTATACGCTCTTCATGGAATGTTATCTAATAAGGACAGGTTTTTTATC
TTGCCTGACATTTCCCTCGATAAGATAAGATAAGGGGTTTCGGGCAATAT
GGACTAACCTGACCAACCCGAGCGTCCAACGGGTTAATATTGAAGCATTC
AGAGATAGAGTTTCTTACGATCGGAAGTACACTAGTACTGTCAATCATAA
CAATCGGGCTCTTTAATTTTTCGATTTGGATTTAGTATGTAGCCGTGAAA
AGAGCCCGATTGTTAGCATTGATACGGTAGGGGGGGAAAGGCACAAGCCG
TTACGCGGCGAGATTTTCTGGCCAGGAAGCGTTCTACCCTTGAAAGCATT
ACGTTCTGCCCCTATTCCCGCAGTCTGATTGGTTCATAAGGTACCAGAAC
GACTCCTGCTCGGAAAGCGCGAGGGTGTGACGTCTGTCGTCTCCTTTTCT
CGAGATCGCTTGGATGTCCGGGATGGCCGACGAGGTGCTCGTGGCCTTGT
GCCATCGTGTGTACCACACTGGCCACAAAACCGTTATGATGTCTGGAAAA
TTAGACAAGAGTCGTTATACTTACATGATTTTCGGTCAGAAGTCGTTGGT
TGTGGTGTCTTTTTGACCAATCAGACGAATGGGCGAAGAACATATTGCTT
TCAAGGGTAGAACGCTTTCTGGCAAAAAAATATCGCCGCATGACGGCTTT
TGTCGTTTCCCTCCTTCAAGAGTGGTATAGTGGTGTAAGGGGACGTCGTT
GGGGATTGAAGACGAGGGTGAGGATGAGGGTGAGGGTGAGTTGGAGTCAT
GAGTCGAGTCGCGACGCACGACGGGGATTGAGTCGCGATGACGAGATTCG
TGCCGTTTTTGCTCGCAGGGAGGTCAAGGCTCGCGAGTGCCAGTGGCGAA
CTTGACGGGATCAACGAAGACGTTGACGAGGAGGACGAGGATGACGAGGA
TGACGAAAATGAAGATGATCCGCGCGCTAGCGGCCGCTTCGTATTCCCCG
GGAGAGTCTTCGGGAGTCTCCGGGACGTGACGAGGGCGAGCAACGGGGGG
GGGGCTGGTGCGAGAAGGTACCCCAGCTTGCGGCAAGGC
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig98:553388..556676-

>mRNA_D-dichotoma_M_contig98.20462.1 ID=mRNA_D-dichotoma_M_contig98.20462.1|Name=mRNA_D-dichotoma_M_contig98.20462.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1404bp|location=Sequence derived from alignment at D-dichotoma_M_contig98:553388..556676- (Dictyota dichotoma ODC1387m male)
ATGGCTCGGAGAAGCTCGGCGCTTGGCAGTGACGAGGTGGCCCAGAAGGT
GATGGCTCGGAGAAGCTCGGCGCTTGGCAGTGACGAGGTGGCCCAGAAGG
TGGGATATCTCCACAAACGCCGGGATACCCTGAGGGGGCGTTTTGCCTAC
CGGCGTAGGTACGCCGTCTTGCGATTCCCTCCGGGGTCGACGAACGTGGC
GGCTACTGGAGACTTGGCCGGTCCCGGTGGCAATCACCCCCACAACGCGC
CAACTGTCTCGAAGACGGACCCTCCGACGCTAGCGCTCTTCAAGACTAGC
GGTGAGGTGAAGTCTGAGAAGGTGATCTCGCTCGAGGGATATCTCCACAA
ACGCCGGGATACCCTGAGGGGGCGTTTTGCCTACCGGCGTAGGTACGCCG
TCTTGCGATTCCCTCCGGGGTCGACGAACGTGGCGGCTACTGGAGACTTG
GCCGGTCCCGGTGGCAATCACCCCCACAACGCGCCAACTGTCTCGAAGAC
GGACCCTCCGACGCTAGCGCTCTTCAAGACTAGCGGTGAGGTGAAGTCTG
AGAAGGTGATCTCGCTCGAGGGCGCAGAGGTGAAGCTCGGGAGGTCAAAG
GCCGGCGACTTGTACCCCTTCGTGGTGGTTTTCACGAATAGCCAACGCCA
ACATCAGCACAACTATGTCCACGAGGCCCGCGAGCCTGCCCCCTCACGGC
GGAACACGGAGGATTTCACCTTCCCCGGGTCCGGAATGGCCCCGAAAGTG
ACATCATCCGTTGCAGGGCGCAGAGGTGAAGCTCGGGAGGTCAAAGGCCG
GCGACTTGTACCCCTTCGTGGTGGTTTTCACGAATAGCCAACGCCAACAT
CAGCACAACTATGTCCACGAGGCCCGCGAGCCTGCCCCCTCACGGCGGAA
CACGGAGGATTTCACCTTCCCCGGGTCCGGAATGGCCCCGAAAGTGACAT
CATCCGTTGCAGGGAGGTCAAGGCTCGCGAGTGCCAGTGGCGAACTTGAC
GGGATCAACGAAGACGTTGACGAGGAGGACGAGGATGACGAGGATGACGA
AAATGAAGATGATCCGCGCGCTAGCGGCCGCTTCGTATTCCCCGGGAGAG
TCTTCGGGAGTCTCCGGGACGTGACGAGGGCGAGCAACGGGGGGGGGGCT
GGTGCGAGAAGGTACCCCAGCTTGCGGCAAGGCGGAGGTCAAGGCTCGCG
AGTGCCAGTGGCGAACTTGACGGGATCAACGAAGACGTTGACGAGGAGGA
CGAGGATGACGAGGATGACGAAAATGAAGATGATCCGCGCGCTAGCGGCC
GCTTCGTATTCCCCGGGAGAGTCTTCGGGAGTCTCCGGGACGTGACGAGG
GCGAGCAACGGGGGGGGGGCTGGTGCGAGAAGGTACCCCAGCTTGCGGCA
AGGC
back to top