mRNA_D-dichotoma_M_contig98.20455.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig98.20455.1
Unique NamemRNA_D-dichotoma_M_contig98.20455.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig98.20455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig98contigD-dichotoma_M_contig98:323216..323985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size771
Cds size768
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931249.4131863-CDS-D-dichotoma_M_contig98:323215..3239831622931249.4131863-CDS-D-dichotoma_M_contig98:323215..323983Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig98 323216..323983 +
1690799686.5670984-CDS-D-dichotoma_M_contig98:323215..3239831690799686.5670984-CDS-D-dichotoma_M_contig98:323215..323983Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig98 323216..323983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig98.20455.1prot_D-dichotoma_M_contig98.20455.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig98 323216..323983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig98.20455.1

>prot_D-dichotoma_M_contig98.20455.1 ID=prot_D-dichotoma_M_contig98.20455.1|Name=mRNA_D-dichotoma_M_contig98.20455.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=256bp
SLTATPEPTAGTIPEPTTIFETPGPTPLVTPAPSPTATPEPTAETTPEPT
TIFETPGPTPLGTAAPAPTGTPGPRSVGTPAPSPVEMPGPTAVGTPAPIT
ALFQPSLSEPQDTISNLASSAVTGAVASTAAVATVTAVTASTTTTSAAAT
VSTLASVVPTGSSAGSVGCTSGSATSTAAGLGKGPPTTSAGSAGCISGSA
TGAPGGTGGGVSAATEGGVSTGTTSSSGPGLTTATDSGTTAVSHSGANGN
SGVNIR
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mRNA from alignment at D-dichotoma_M_contig98:323216..323985+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig98.20455.1 ID=mRNA_D-dichotoma_M_contig98.20455.1|Name=mRNA_D-dichotoma_M_contig98.20455.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=770bp|location=Sequence derived from alignment at D-dichotoma_M_contig98:323216..323985+ (Dictyota dichotoma ODC1387m male)
AGTCTTACAGCGACGCCCGAACCGACAGCTGGGACGATACCAGAACCTAC
CACGATATTTGAGACGCCAGGCCCGACACCATTGGTGACGCCGGCGCCCA
GTCCTACAGCGACGCCTGAACCGACAGCTGAGACTACACCAGAACCTACG
ACAATATTTGAGACGCCAGGCCCGACACCACTGGGGACGGCGGCACCTGC
TCCTACAGGGACGCCTGGACCTAGGTCTGTGGGTACACCAGCACCCTCTC
CTGTAGAGATGCCTGGACCGACCGCTGTGGGGACACCAGCACCCATCACA
GCACTATTCCAACCTTCTTTATCAGAACCGCAGGATACGATTTCCAACCT
GGCTTCAAGTGCAGTGACTGGCGCAGTAGCAAGCACAGCAGCAGTGGCAA
CTGTGACCGCTGTAACTGCGTCTACAACTACAACTTCCGCGGCGGCCACA
GTGTCGACGCTGGCTTCAGTAGTACCGACGGGGTCATCAGCTGGGTCAGT
GGGTTGTACTTCTGGATCAGCTACGAGTACGGCCGCTGGTTTGGGTAAAG
GGCCTCCTACAACATCGGCCGGGTCCGCGGGTTGTATATCTGGATCAGCG
ACAGGCGCTCCAGGTGGTACGGGTGGAGGAGTTTCCGCAGCAACTGAAGG
TGGGGTGAGCACAGGCACGACTTCATCGTCTGGTCCTGGGTTAACAACGG
CCACAGACTCTGGAACAACGGCGGTGTCGCATTCAGGGGCCAACGGGAAC
TCGGGTGTAAATATACGGAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig98:323216..323985+

>mRNA_D-dichotoma_M_contig98.20455.1 ID=mRNA_D-dichotoma_M_contig98.20455.1|Name=mRNA_D-dichotoma_M_contig98.20455.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1536bp|location=Sequence derived from alignment at D-dichotoma_M_contig98:323216..323985+ (Dictyota dichotoma ODC1387m male)
AGTCTTACAGCGACGCCCGAACCGACAGCTGGGACGATACCAGAACCTAC
CACGATATTTGAGACGCCAGGCCCGACACCATTGGTGACGCCGGCGCCCA
GTCCTACAGCGACGCCTGAACCGACAGCTGAGACTACACCAGAACCTACG
ACAATATTTGAGACGCCAGGCCCGACACCACTGGGGACGGCGGCACCTGC
TCCTACAGGGACGCCTGGACCTAGGTCTGTGGGTACACCAGCACCCTCTC
CTGTAGAGATGCCTGGACCGACCGCTGTGGGGACACCAGCACCCATCACA
GCACTATTCCAACCTTCTTTATCAGAACCGCAGGATACGATTTCCAACCT
GGCTTCAAGTGCAGTGACTGGCGCAGTAGCAAGCACAGCAGCAGTGGCAA
CTGTGACCGCTGTAACTGCGTCTACAACTACAACTTCCGCGGCGGCCACA
GTGTCGACGCTGGCTTCAGTAGTACCGACGGGGTCATCAGCTGGGTCAGT
GGGTTGTACTTCTGGATCAGCTACGAGTACGGCCGCTGGTTTGGGTAAAG
GGCCTCCTACAACATCGGCCGGGTCCGCGGGTTGTATATCTGGATCAGCG
ACAGGCGCTCCAGGTGGTACGGGTGGAGGAGTTTCCGCAGCAACTGAAGG
TGGGGTGAGCACAGGCACGACTTCATCGTCTGGTCCTGGGTTAACAACGG
CCACAGACTCTGGAACAACGGCGGTGTCGCATTCAGGGGCCAACGGGAAC
TCGGGTGTAAATATACGGAGTCTTACAGCGACGCCCGAACCGACAGCTGG
GACGATACCAGAACCTACCACGATATTTGAGACGCCAGGCCCGACACCAT
TGGTGACGCCGGCGCCCAGTCCTACAGCGACGCCTGAACCGACAGCTGAG
ACTACACCAGAACCTACGACAATATTTGAGACGCCAGGCCCGACACCACT
GGGGACGGCGGCACCTGCTCCTACAGGGACGCCTGGACCTAGGTCTGTGG
GTACACCAGCACCCTCTCCTGTAGAGATGCCTGGACCGACCGCTGTGGGG
ACACCAGCACCCATCACAGCACTATTCCAACCTTCTTTATCAGAACCGCA
GGATACGATTTCCAACCTGGCTTCAAGTGCAGTGACTGGCGCAGTAGCAA
GCACAGCAGCAGTGGCAACTGTGACCGCTGTAACTGCGTCTACAACTACA
ACTTCCGCGGCGGCCACAGTGTCGACGCTGGCTTCAGTAGTACCGACGGG
GTCATCAGCTGGGTCAGTGGGTTGTACTTCTGGATCAGCTACGAGTACGG
CCGCTGGTTTGGGTAAAGGGCCTCCTACAACATCGGCCGGGTCCGCGGGT
TGTATATCTGGATCAGCGACAGGCGCTCCAGGTGGTACGGGTGGAGGAGT
TTCCGCAGCAACTGAAGGTGGGGTGAGCACAGGCACGACTTCATCGTCTG
GTCCTGGGTTAACAACGGCCACAGACTCTGGAACAACGGCGGTGTCGCAT
TCAGGGGCCAACGGGAACTCGGGTGTAAATATACGG
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