mRNA_D-dichotoma_M_contig975.20432.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig975.20432.1 vs. uniprot
Match: D7FML9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FML9_ECTSI) HSP 1 Score: 421 bits (1082), Expect = 1.510e-134 Identity = 243/469 (51.81%), Postives = 299/469 (63.75%), Query Frame = 2
Query: 404 LREPLPFFSDDRLITYALIFYLVATRLDPYAVRILKIPLLWKPMNLLSTVRRVGKIVAMVDYAAGKLPVSGYYPTALFGPILAGFGRGIGGSLMPADKGLSSLKKGLPWKFQLCFLVALFYHIVANDNYILGGMIRGALGLEEASREDIGFIMVVFGAIVTTIQLFFIPEFNPFTPTHRVLYAVSGFQPAMAPPKPT---PAPRETSVAPISGSQGAKGDGGATNDKTNDSGEGASNRAGNGNASALKGVEERKESQMAEEDDKGTKGTRTDTNTEGDDGRQGLYDLRSRKKAQLAMDVMKPVGVVAVAILALYSQQPPSVLKPGRFISVGGAGLASCSFLPPPLRAGYCDPLRAAVTETGSLVVYRSESNAVPVVTLAGVLEDEGKGTQVLFSSPVPRWRRFEVGQLRVELTNDGFLVVMAGPKRLWSSTITPLGEHLPPHRVEARLDAVKGALEVYKGGHLQWSSAG 1801
+R+P F ++D L+T ++F+L + DPY V +K P LWK M LLST R+ KI +VDYA K P S YYP ALFGPI+ G RGIGGSL+PADKGLSS+ K LPW QLCF VA FYH+VAND YILGGM+RGALGLE A+REDI I V FG +VT IQ ++ P+FNPFTP H+ LY V+G PK PR T P + + AK +GG G EE K+ + E G+ G GLYDL++RKK Q ++ +KPVGV AVA+LALYS+QPPS + PG + GG+GLASC+FLP L G C PLRAAVTETGSLVVYR + VPV+ A + G +VL+SSP P+ E +++++L+ DG L VMAG K+LWSST+T LG+ LP RVEARLDAVKGALEVYKGG LQWSSAG
Sbjct: 1 MRDPPLFLNNDLLVTCIMVFFLFSVVFDPYVVNFIKTPHLWKAMALLSTTSRMNKICFIVDYALTKFPPSPYYPIALFGPIMIGLARGIGGSLVPADKGLSSISKDLPWAVQLCFSVATFYHVVANDTYILGGMVRGALGLENATREDIRLIAVTFGVVVTVIQTYYAPKFNPFTPAHQALYTVTGM------PKTAITIEVPRST---PSTDADKAKDNGG-------------------------NGAEEAKDKEKKE----------------GEGG--GLYDLKTRKKIQSFLEALKPVGVAAVAVLALYSRQPPSTIIPGVVVKAGGSGLASCAFLPKVLSNG-CTPLRAAVTETGSLVVYRGKE--VPVLPAAKKKVEGDDGPEVLWSSPAPKKLAAE-DEVQLDLSEDGILSVMAGDKKLWSSTLTTLGKRLPNFRVEARLDAVKGALEVYKGGQLQWSSAG 413
BLAST of mRNA_D-dichotoma_M_contig975.20432.1 vs. uniprot
Match: A0A6H5JUV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV5_9PHAE) HSP 1 Score: 397 bits (1021), Expect = 2.040e-125 Identity = 235/471 (49.89%), Postives = 288/471 (61.15%), Query Frame = 2
Query: 200 MLTDIDEWARYILLLKWPYSGEVYLFSLYAISFVNARKGKDRHEGSLLTGFMHMLLNVVASSSLTPLLLREPLPFFSDDRLITYALIFYLVATRLDPYAVRILKIPLLWKPMNLLSTVRRVGKIVAMVDYAAGKLPVSGYYPTALFGPILAGFGRGIGGSLMPADKGLSSLKKGLPWKFQLCFLVALFYHIVANDNYILGGMIRGALGLEEASREDIGFIMVVFGAIVTTIQLFFIPEFNPFTPTHRV----LYAVSGFQPAMAPPKPT---PAPRETSVAPISGSQGAKGDGGATNDKTNDSGEGASNRAGNGNASALKGVEERKESQMAEEDDKGTKGTRTDTNTEGDDGRQGLYDLRSRKKAQLAMDVMKPVGVVAVAILALYSQQPPSVLKPGRFISVGGAGLASCSFLPPPLRAGYCDPLRAAVTETGSLVVYRSESNAVPVVTLAGVLEDEGKGTQVLFSSPVPR 1591
ML++ EW RYI+LLKWPYS E YLFSL + V AR + EG LL F+H L+ S + PLL+R+P F ++D L+T ++F+LV+ DPY V +K P LWK M LLST R+ KI +VDYA K P S YYP ALFGPI+ G RGIGGSL+PADKGLSS+ K LPW QLCF VA FYHIVAND YILGGM+RGALGLE A+REDI I V FG +VT IQ ++ P+FNPFTP H+ LYAV+G PK PR T DK D+G GNG A KG E++ EG+ +GLYDL++RKK Q ++ +KPVGV AVA+LALYS+QPPS + PG + GG+GLASC+FLP L G C PLRAAVTETGSLVVYR + VPV+ A + G +VL+SSP P+
Sbjct: 1 MLSEAIEWLRYIVLLKWPYSSEFYLFSLVTSACVKARGKSTKFEGLLLPMFVHTLMCTTGSGVVGPLLMRDPPLFLNNDLLVTCIMVFFLVSVVFDPYVVNFIKTPHLWKAMALLSTTSRMNKICFIVDYALTKFPPSPYYPIALFGPIMIGLARGIGGSLVPADKGLSSISKDLPWAVQLCFSVATFYHIVANDTYILGGMVRGALGLENATREDIRLIAVTFGVVVTVIQTYYAPKFNPFTPAHQATSPALYAVTGM------PKTAITIEVPRSTPSTDA--------------DKAKDNG-------GNG-AEETKGKEKK----------------------EGEG--EGLYDLKTRKKIQSFLEALKPVGVAAVAVLALYSRQPPSTIIPGVVVKAGGSGLASCAFLPKVLSNG-CTPLRAAVTETGSLVVYRGKE--VPVLPAAKKKVEGDDGAEVLWSSPAPK 416
BLAST of mRNA_D-dichotoma_M_contig975.20432.1 vs. uniprot
Match: A0A835Z0I7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I7_9STRA) HSP 1 Score: 119 bits (297), Expect = 8.510e-26 Identity = 79/250 (31.60%), Postives = 122/250 (48.80%), Query Frame = 2
Query: 224 ARYILLLKWPYSGEVYLFSLYAISFVNARKGKDRH----EGSLLTGFMHMLLNVVASSSLTPLLLREPLPFFSDDRLITYALIFYLVATRLDPYAVRILKIPLLWKPMNLLSTVRRVGKIVAMVDYAAGKLPVSGYYPTALFGPILAGFGRGIGGSLMPADKGLSSLKKGLPWKFQLCFLVALFYHIVANDNYILGGMIRGALGLEEASREDIGFIMVVFGAIVTTIQLFFIPEFNPFTPTHRVLYAVSG 961
A LL PY EV LF + + G ++ + +LT M +VA P LL +P +D L+ L +LV RL+ +L+ P++ + + ++ V R MV A ++P YYP +GP+L G G G +P DKGL+S+K G PW Q F +L +H++A+D ++ + A + + + +V F A V T+Q + P FNPF+P HRV YA+SG
Sbjct: 10 AHDFLLQDLPYMPEVCLFIYALVGAARVKSGPAKNMYWAQSLVLTFLMCFGGGIVA-----PFLLGKPPVILINDLLVVAVLGSWLVVNRLEEPVGALLRAPVISQALAFMAEVFRANGFCRMVQVAFKEIPAGKYYPIPFWGPVLLGTIAGCAGMFLPFDKGLASIKGGSPWPLQSAFYGSLAFHLLAHDPHVRAALAPYA---GDYTADAARACVVAFFAAVATLQTYAGPHFNPFSPLHRVAYAISG 251
BLAST of mRNA_D-dichotoma_M_contig975.20432.1 vs. uniprot
Match: A0A835Z4Q5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Q5_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 8.980e-15 Identity = 64/214 (29.91%), Postives = 96/214 (44.86%), Query Frame = 2
Query: 341 LTGFMHMLLNVVASSSLTPLLLREPLPFFSDDRLITYALIFYLVATRLDPYAV-RILKIPLLWKPMNLLSTVRRVGKIVAMVDYAAGKLPVSGYYPTA----LFGPILAGFGRGIGGSLMPADKGLSSLKKGLPWKFQLCFLVALFYHIVANDNYILGGMIR----GALGLEEASREDIGFIMVVFGAIVTTIQLFFIPEFNPFTPTHRVLYAV 955
L + + L L LLREP + D + L + + A+ +L +P++ + +L R + A+V AAG L +G P A FGPI+AG GG P D+GL SL++G+PW Q A FYH+ ++ LG +R GA A+R + + + GA+ T F P FN P H +YA+
Sbjct: 29 LESIVLVTLTAFGGHLLAQTLLREPPDLITCDTYLPLILASWYLVNHSPFNAIPALLAMPVVHQLAVVLMESHRAAVLCAVVTAAAGSLRAAGSAPNAPALPFFGPIIAGAVSACGGLFFPPDRGLRSLREGVPWPLQSALYAATFYHLAVHEQGPLGRFLRHYVLGAAVDAAAARAAVAALFSICGALQTA----FGPSFNALAPLHAAVYAL 238 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig975.20432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig975.20432.1 >prot_D-dichotoma_M_contig975.20432.1 ID=prot_D-dichotoma_M_contig975.20432.1|Name=mRNA_D-dichotoma_M_contig975.20432.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=537bp MLTDIDEWARYILLLKWPYSGEVYLFSLYAISFVNARKGKDRHEGSLLTGback to top mRNA from alignment at D-dichotoma_M_contig975:105339..118030+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig975.20432.1 ID=mRNA_D-dichotoma_M_contig975.20432.1|Name=mRNA_D-dichotoma_M_contig975.20432.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=12692bp|location=Sequence derived from alignment at D-dichotoma_M_contig975:105339..118030+ (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig975:105339..118030+ >mRNA_D-dichotoma_M_contig975.20432.1 ID=mRNA_D-dichotoma_M_contig975.20432.1|Name=mRNA_D-dichotoma_M_contig975.20432.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=3222bp|location=Sequence derived from alignment at D-dichotoma_M_contig975:105339..118030+ (Dictyota dichotoma ODC1387m male)back to top |