mRNA_D-dichotoma_M_contig972.20415.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig972.20415.1
Unique NamemRNA_D-dichotoma_M_contig972.20415.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig972.20415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig972contigD-dichotoma_M_contig972:235097..237074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_004010.1
Exons3
Model size251
Cds size207
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig972.20415.1prot_D-dichotoma_M_contig972.20415.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig972 235141..237074 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931240.5798938-UTR-D-dichotoma_M_contig972:235096..2351401622931240.5798938-UTR-D-dichotoma_M_contig972:235096..235140Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig972 235097..235140 +
1690799682.2817073-UTR-D-dichotoma_M_contig972:235096..2351401690799682.2817073-UTR-D-dichotoma_M_contig972:235096..235140Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig972 235097..235140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931240.5974736-CDS-D-dichotoma_M_contig972:235140..2352181622931240.5974736-CDS-D-dichotoma_M_contig972:235140..235218Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig972 235141..235218 +
1690799682.2911162-CDS-D-dichotoma_M_contig972:235140..2352181690799682.2911162-CDS-D-dichotoma_M_contig972:235140..235218Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig972 235141..235218 +
1622931240.6117141-CDS-D-dichotoma_M_contig972:235642..2357461622931240.6117141-CDS-D-dichotoma_M_contig972:235642..235746Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig972 235643..235746 +
1690799682.3041737-CDS-D-dichotoma_M_contig972:235642..2357461690799682.3041737-CDS-D-dichotoma_M_contig972:235642..235746Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig972 235643..235746 +
1622931240.6325514-CDS-D-dichotoma_M_contig972:237049..2370741622931240.6325514-CDS-D-dichotoma_M_contig972:237049..237074Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig972 237050..237074 +
1690799682.3179893-CDS-D-dichotoma_M_contig972:237049..2370741690799682.3179893-CDS-D-dichotoma_M_contig972:237049..237074Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig972 237050..237074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig972.20415.1

>prot_D-dichotoma_M_contig972.20415.1 ID=prot_D-dichotoma_M_contig972.20415.1|Name=mRNA_D-dichotoma_M_contig972.20415.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=69bp
MSSKITKQMIARVDDMVSMASSATKQEDEATKKGKAARRAIVGALSLSKR
GDRQTPAKSGSSSRTKVTK
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mRNA from alignment at D-dichotoma_M_contig972:235097..237074+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig972.20415.1 ID=mRNA_D-dichotoma_M_contig972.20415.1|Name=mRNA_D-dichotoma_M_contig972.20415.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1978bp|location=Sequence derived from alignment at D-dichotoma_M_contig972:235097..237074+ (Dictyota dichotoma ODC1387m male)
GGATCACCTAGCAAGCCTCACCCCAACGCTATTTTGAGGCCAAGATGTCG
TCCAAAATTACAAAGCAGATGATAGCGAGAGTTGATGATATGGTATCAAT
GGCATCTAGTGCGACAAAGCAGGTGAGTCCCTCGCAACTGATTTCTTAAC
GCCTAATCCATTCTCGCTAACGCCGACTCTCAATTGATCACTAGGTTACA
TTGAAGGCAGCGTCTCCCCAACCGGATGAGGGATGCCTTACTGTCATTGT
CTACCTGACCTTCTCACTGGATCTTTAATGTTGGGAATAACTATTAACAT
CTCAATCACATGTAGATCGTCTGCTTGATTCTGGTTGATGGGATGAAGCA
ACCCATTCCATCATCTCTCTTGTACGAGTGGTTAATTACTGTACCACAGT
ATATTCAGAAACAACGCAACGATGCAACCGTACATCGCAGCCCTGTCTGA
TCAACCGCTGCGAACGTCAATCCTTTCCCCAAGCTACTTGAAGTTATTTG
ATTCGAGTTGTCGCGCTTCTAATCTATCTCGAAATCTATTTGCCAGGAAG
ATGAGGCGACAAAGAAGGGAAAAGCAGCTCGGCGTGCAATCGTCGGCGCG
CTGTCGTTGTCGAAGAGAGGAGATCGCCAGACGCCGGCGAAGTCTGGCAG
GTGAGATATTTTCGCCGTGCTCCCGGAATGCTAGTACTCATGTGTGCCGT
ACGGGAGGACATTGAAGATTGCGAATGAAGGCGGGGGGGGGGAGGGGCAA
ATAATTTTGGTTGGACCTAGATTATGCTTGATACTGTATAGGATAGCACT
CATGGCCCCGGAGCACGTTACAACGGAATTCACTCGTACGAACATCTCAT
GCCGAAGCAATAGGCGGATGAGGACCGTCCGTGCGGCAACATCAAAACGT
AAGATGACTGACGGGCGTTTCGTTGAGAACATAATGTTTCTTTCTACAGT
ACGCGAGGGGCGAATTGCGCGGGTTTATGCAAAACGTTTCAAGGTTATCA
TAACGCCGGGTGCAGAGGGCTTGTACAGTTCCATGCGAAAACCAATCCAC
GATTCGAAGCAGCAGCGGGCGATCTGACCGGACTTCACCCGAGCTGGGAG
GGGCAGAGGAAAGTGGGGGGCCAGGGAAAGCACATGCCGTAGCATCTGGA
GATCTGCGAACAACGTTCTTGGCATTGAAGGAACCTCGACAGACAGTTGC
TACGTGGCGGGGGCGCCCTTTGTGATGTGGTGTTTTGATGTATCGACATC
GGACAATTGTCAACAGTGTAGTTGCTTTGCTCATCGAGCTGACTGAAGCG
TCCTCGTTTTGCACGAAACACAGTGTCGACCTTGTGCGGTGTACATTATG
TTGACGCGCAGAACCGGGACATCGCATTTGACCGACCAGTCTCGAGACCG
TCGACGCGTCCATGCATGAGCGCGGCAACGAACCACAGCTTGTTCACGTG
CTCATGAAATCATGGCTAGCTCCACGGTGCCTGTGAACGAACTTCCGGCG
TGCAACCATCCTTCTACTTATCGTTGAAACCCAGGGTAGAGCTAAACGTT
CCCGTTGCAATGCGACCAAGGTCACTGCACTATACGGGGACTCCCCAGGA
ATCCTCGACAGCACGAACCGTGTACTACGAGCCGGGGGTATAGATTTCAC
CATCTAGACAGTACAGTACTTCAAATCGTAACATAATAAGTTTTGAGCCC
TTTCACTAGGATTTAATTTAGGCAGGTAATCAAAGGGCGATTTTGTTACG
ATCTTCGAAGGACTGTGCATACTGCTACTCTCGATATGGTCAAGGCTCGC
TCGATTGCAATACACGCTTCCTGTCATGGATCCTGGGTCGGGTTTGGAAT
CGTGTGGTTCTAATGAAAATACCATCACCTGCCGTGCTCACTCACTCTGT
CTATGTCACTCTTGTTGTCTCGAACTCGTGAAACCGGCTTTCTCCGCGGC
CAGCTCGTCGAGAACCAAGGTTACGAAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig972:235097..237074+

>mRNA_D-dichotoma_M_contig972.20415.1 ID=mRNA_D-dichotoma_M_contig972.20415.1|Name=mRNA_D-dichotoma_M_contig972.20415.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=414bp|location=Sequence derived from alignment at D-dichotoma_M_contig972:235097..237074+ (Dictyota dichotoma ODC1387m male)
ATGTCGTCCAAAATTACAAAGCAGATGATAGCGAGAGTTGATGATATGGT
ATCAATGGCATCTAGTGCGACAAAGCAGATGTCGTCCAAAATTACAAAGC
AGATGATAGCGAGAGTTGATGATATGGTATCAATGGCATCTAGTGCGACA
AAGCAGGAAGATGAGGCGACAAAGAAGGGAAAAGCAGCTCGGCGTGCAAT
CGTCGGCGCGCTGTCGTTGTCGAAGAGAGGAGATCGCCAGACGCCGGCGA
AGTCTGGCAGGAAGATGAGGCGACAAAGAAGGGAAAAGCAGCTCGGCGTG
CAATCGTCGGCGCGCTGTCGTTGTCGAAGAGAGGAGATCGCCAGACGCCG
GCGAAGTCTGGCAGCTCGTCGAGAACCAAGGTTACGAAGCTCGTCGAGAA
CCAAGGTTACGAAG
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